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- Table of Contents
Plan MVK IHC-P using the granular cytoplasmic staining reported in liver hepatocytes and esophageal squamous epithelial cells (HPA tissue IHC). The catalog antibody has an IHC dilution of 2–5 μg/ml (datasheet A02465-2); interpret staining with the medium IHC–RNA consistency in mind (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Granular cytoplasm in tissue sections (HPA tissue IHC) | |
| Staining pattern | Granular cytoplasm in hepatocytes and squamous epithelial cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A02465-2) | |
| Positive control | Esophagus+4 more · see all | |
| Negative control | Ovary |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A02465-2) | |
| Caveat | Staining and RNA expression have medium consistency (HPA tissue IHC) | |
| Regulation | Expression regulation not annotated (UniProt) | |
| Isoform / epitope | No annotated isoforms; one 1–396 chain (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet A02465-2) with a published MVK tissue-section IHC method (PMC11752689 methods).
| Sample | Paraffin-embedded human colon cancer tissue; fixative not specified (datasheet A02465-2) |
| Fixation | Image fixative and duration unreported (datasheet A02465-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A02465-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02465-2) |
| Primary antibody | Rabbit anti-MVK, 2-5 μg/ml (datasheet A02465-2) |
| Primary incubation | Overnight at 4 °C (datasheet A02465-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A02465-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | MVK-positive staining in squamous epithelial cells of esophagus (HPA tissue IHC: High). HPA tissue profile: Granular cytoplasmic expression in all tissues, including testis esophagus and liver. No signal in the no-primary control. |
MVK is a cytoplasmic and peroxisomal enzyme without a transmembrane segment (UniProt Q03426). In paraffin sections, expect granular cytoplasmic staining, particularly in hepatocytes, esophageal squamous epithelial cells and testicular Leydig cells (HPA tissue IHC: High in each). HPA rates the tissue IHC pattern Approved, with medium consistency between staining and RNA expression (HPA tissue IHC: reliability).
| Granular cytoplasmic staining in hepatocytes, esophageal squamous epithelial cells or Leydig cells. | This matches the reported high-staining cells and broad granular cytoplasmic pattern (HPA tissue IHC: High; profile). Compare intensity within the same staining run; a High HPA category is a reference observation, not a numeric score for every section (HPA tissue IHC: levels; standard IHC practice). |
| Predominantly nuclear or sharp plasma-membrane staining, with little cytoplasmic signal. | That distribution does not match cytoplasmic and peroxisomal MVK or its lack of a transmembrane segment (UniProt Q03426: location, topology). Treat it as suspect and check controls and detection conditions before assigning it to MVK (standard IHC practice). |
| Strong staining restricted to ovarian follicle cells, especially when a positive reference is weak. | HPA reports MVK as not detected in follicle cells (HPA tissue IHC: Ovary). Consider off-target binding or endogenous chromogen-generating activity; check omission and detection controls (standard IHC practice). One discordant section cannot establish the signal's identity (standard IHC practice). |
| Uniform chromogen haze across cells and extracellular spaces, without discernible cytoplasmic granules. | HPA describes a granular cytoplasmic pattern (HPA tissue IHC: profile). Widespread haze is more consistent with assay background than interpretable cell-associated staining; inspect the negative control, wash steps and chromogen development (standard IHC practice). |
| No signal in hepatocytes, esophageal squamous epithelial cells or Leydig cells. | These are reported High reference cells (HPA tissue IHC: Liver, Esophagus, Testis). First consider a run-level sensitivity or detection problem and compare same-run controls (standard IHC practice). HPA's Approved rating has medium RNA–staining consistency, so absence in one section needs cautious interpretation (HPA tissue IHC: reliability). |
| Reference cell selection (HPA tissue IHC: levels). | Use reported High cells in liver, esophagus or testis to judge whether the run can show the expected pattern (HPA tissue IHC: High; standard IHC practice). Adipocytes and several glandular or epithelial populations are Medium, while ovarian follicle cells are Not detected (HPA tissue IHC: levels). |
| Intracellular distribution and topology (UniProt Q03426; HPA tissue IHC: profile). | Expect a cell-associated cytoplasmic pattern rather than a membrane outline: MVK is cytoplasmic/peroxisomal, has no transmembrane segment and is reported as granular by tissue IHC (UniProt Q03426; HPA tissue IHC: profile). Routine chromogenic IHC alone should not assign individual granules to peroxisomes (standard IHC practice). |
| IHC evidence and antibody scope (HPA tissue IHC: reliability; HPA antibodies). | The tissue pattern is Approved but has medium consistency with RNA data (HPA tissue IHC: reliability). HPA016961 is IHC Approved; HPA044110 has ICC Supported status with no IHC status supplied (HPA antibodies). Interpret unexpected staining against the IHC evidence for the antibody actually used. |
| IF/ICC Q: What localisation should be expected? | A: HPA reports vesicles as Approved and cytosol as Supported in ICC-IF images from A-431, U-251MG and U2OS (HPA subcellular). That supports an intracellular IF pattern, but the ICC-IF record does not set a paraffin IHC staining threshold (HPA subcellular; HPA tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| High-reference tissue is blank (HPA tissue IHC: Liver, Esophagus, Testis). | Primary-antibody or detection failure is possible (standard IHC practice). | Check a same-run positive control, primary incubation, retrieval conditions and detection reagents before scoring the tissue negative (standard IHC practice). No MVK-specific retrieval condition is supplied (UniProt Q03426; HPA tissue IHC). |
| The entire section has diffuse brown background. | Nonspecific binding, endogenous enzyme activity or overdevelopment can obscure cell patterns (standard chromogenic IHC practice). | Compare primary-omission and detection controls; review blocking, washes and development time (standard IHC practice). Reassess only when granular cytoplasmic detail can be distinguished (HPA tissue IHC: profile). |
| Ovarian follicle cells stain strongly (HPA tissue IHC: Not detected). | Off-target antibody binding or endogenous detection activity is possible; the HPA observation alone cannot identify the cause (HPA tissue IHC: Ovary; standard IHC practice). | Inspect omission controls and repeat alongside a reported High tissue in the same run (standard IHC practice; HPA tissue IHC: Liver, Esophagus, Testis). |
| Signal appears mainly nuclear or at cell borders. | That distribution conflicts with recorded cytoplasmic/peroxisomal location and absent transmembrane segment (UniProt Q03426). | Check counterstain, chromogen deposits and negative controls, then reassess localisation in intact cells (standard IHC practice). Do not score compartment-mismatched signal as the expected pattern (UniProt Q03426). |
| Staining differs between two antibodies or between IHC and IF. | The supplied validation applies by antibody and application: HPA016961 is IHC Approved; HPA044110 is ICC Supported (HPA antibodies). | Compare each result with its own application record and controls (HPA antibodies; standard IHC/IF practice). Do not transfer the ICC-IF vesicle finding into a required paraffin IHC score (HPA subcellular; HPA tissue IHC). |
| A Medium or Low reference cell stains faintly. | HPA reports lower staining in adipocytes and several glandular, epithelial, muscle or hematopoietic populations (HPA tissue IHC: Medium, Low). | Judge adequacy using a reported High population in the same run, then score the weaker cell type separately (HPA tissue IHC: High, Medium, Low; standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Esophagus | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Liver | Hepatocytes | High | Protein (IHC) | HPA → |
| Testis | Leydig cells | High | Protein (IHC) | HPA → |
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Ovary | Follicle cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot MVK staining in paraffin sections by checking retrieval, signal location, controls, and scoring against the available tissue evidence.
The IHC-validated anti-MVK antibody has paraffin-section IHC data from human colon and liver cancer tissue and IF data from human liver cancer tissue (catalog images: A02465-2).
A02465-2 is listed for human IHC and IF (catalog: A02465-2 applications and reactivity). Its IHC captions show human colon and liver cancer paraffin sections; its IF caption shows a human liver cancer paraffin section (catalog images: A02465-2).
Which to pick: Choose A02465-2 for human paraffin-section IHC; its own captions document that preparation, while the fixative is unreported (catalog IHC images: A02465-2). The same SKU has tissue IF data, but the supplied captions do not establish ICC validation (catalog applications and IF image: A02465-2). No cross-species option is supported by this human-reactive catalog entry (catalog reactivity: A02465-2).