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- Table of Contents
Plan NCF2 paraffin-section IHC around expected cytoplasmic localization (UniProt) and staining in neutrophils and macrophages (HPA tissue IHC). Use the catalog antibody’s human tonsil example at 1 μg/ml (datasheet A02476-1), and control for endogenous peroxidase during DAB detection (standard IHC practice).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasm expected; tissue IHC compartment unresolved (UniProt; HPA tissue IHC) | |
| Staining pattern | Neutrophils/macrophages: cytoplasmic signal expected (HPA tissue IHC; UniProt) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A02476-1) | |
| Positive control | Bone marrow+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A02476-1) | |
| Caveat | Endogenous peroxidase may confound DAB in marrow (HPA tissue IHC; standard IHC practice) | |
| Regulation | Expression regulation not annotated (UniProt) | |
| Isoform / epitope | 4 isoforms; epitope coverage cannot be resolved here (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet A02476-1) is followed by published NCF2 staining protocols for GBM, colon and rectal tissue, and HCC (PMC12936047; PMC12684989; PMC10134316).
| Sample | Paraffin-embedded human tonsil tissue; fixative not specified (datasheet A02476-1) |
| Fixation | Image fixative and duration unreported (datasheet A02476-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A02476-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02476-1) |
| Primary antibody | Rabbit anti-NCF2, 0.5-1μg/ml (datasheet A02476-1) |
| Primary incubation | Overnight at 4 °C (datasheet A02476-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A02476-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | NCF2-positive staining in hematopoietic cells of bone marrow (HPA tissue IHC: High). HPA tissue profile: High expression in neutrophils and macrophages. No signal in the no-primary control. |
NCF2 should appear predominantly cytoplasmic in positive cells: UniProt places it in the cytoplasm and reports no transmembrane segment (UniProt P19878); HPA supports a cytosolic location (HPA: Cytosol, supported). Expect staining especially in neutrophils and macrophages (HPA: High expression). HPA rates tissue IHC reliability Enhanced, with medium consistency between staining and RNA data (HPA: tissue IHC).
| Cytoplasmic staining in inflammatory cells, including lung macrophages. | This fits NCF2 localisation (UniProt P19878; HPA: Cytosol, supported). Lung macrophage staining is Medium in the HPA tissue IHC record; intensity need not match every positive tissue (HPA: Lung, macrophages, Medium). |
| Strong staining in bone marrow hematopoietic cells or splenic red-pulp cells. | Both are High in HPA tissue IHC (HPA: Bone marrow, hematopoietic cells, High; Spleen, red-pulp cells, High). Assess which cells stain before calling an entire section uniformly positive. |
| Predominantly nuclear staining, or a sharp membrane-only outline in otherwise positive cells. | This conflicts with the reported cytoplasmic and cytosolic locations (UniProt P19878; HPA: Cytosol, supported). Check morphology and controls, then consider staining artefact or antibody specificity before assigning NCF2 localisation. |
| Prominent signal in adipocytes or bronchial respiratory epithelium. | Those cell types are Not detected in the listed HPA tissue IHC observations (HPA: Adipose tissue, adipocytes; Bronchus, respiratory epithelial cells). Review cell identification and controls; cross-reactivity or endogenous detection activity may explain discordant signal (general IHC practice). |
| Diffuse colour across cells and extracellular space, or no signal in a known-positive control. | Diffuse deposition makes cell-specific localisation difficult to score (general IHC practice). An absent control signal prevents a negative test section from being interpreted confidently; check staining-run controls and detection steps (general IHC practice). |
| Cell composition of the section | HPA reports High expression in neutrophils and macrophages, while named tissue entries refer to specific cell populations (HPA: tissue IHC). Interpret the stained cells rather than treating a whole tissue as uniformly positive. |
| Location during oxidase assembly | NCF2 participates in a cytosolic regulatory complex that assembles with a membrane oxidase core upon activation (UniProt P19878). The reference location remains cytoplasmic/cytosolic; assembly alone does not establish a membrane-only IHC pattern. |
| Antibody evidence | Three listed antibodies have Enhanced IHC validation (HPA: HPA002327, HPA006040, CAB022160). That supports the reported tissue pattern but does not verify specificity for every specimen or staining condition (general IHC practice). |
| Isoforms and epitope uncertainty | UniProt lists 4 NCF2 isoforms and SH3 and PB1 domains (UniProt P19878). No epitope location is supplied here, so isoform coverage and domain-dependent staining cannot be inferred. |
| Phosphorylation and processing | UniProt lists phosphothreonine 233 and phosphoserine 399, with no signal peptide or propeptide and one chain spanning residues 1–526 (UniProt P19878). These annotations do not establish a staining change under IHC conditions. |
| Chromogenic detection | Endogenous enzyme activity or nonspecific colour deposition can imitate cellular signal in chromogenic IHC (general IHC practice). Use suitable detection controls and assess whether colour follows plausible cell boundaries and cytoplasmic localisation. |
| IF/ICC Q&A: what location is expected? | Predominantly cytosolic signal is the supported IF/ICC expectation (HPA: Cytosol, supported). HPA lists ICC-IF images in A-431, U-251MG and U2OS, but that record supplies no IF protocol here (HPA: subcellular). |
| Situation | Likely cause | Next action |
|---|---|---|
| No staining in a bone marrow positive-control section. | Bone marrow hematopoietic cells are High in HPA tissue IHC, so an entirely blank control raises a staining-run question (HPA: Bone marrow, hematopoietic cells, High; general IHC practice). | Check that hematopoietic cells are present, then review primary-antibody application, detection reagents and control performance before interpreting test negatives (general IHC practice). |
| Lung macrophages stain less strongly than bone marrow cells. | HPA records lung macrophages as Medium and bone marrow hematopoietic cells as High (HPA: tissue IHC). Different expected levels can produce different apparent intensities. | Score the identifiable positive cell population and its cytoplasmic distribution within each tissue; retain a suitable positive control for the staining run (HPA: tissue IHC; general IHC practice). |
| Colour appears mainly in nuclei or as continuous membrane outlines. | That distribution disagrees with NCF2 cytoplasm and supported cytosol localisation (UniProt P19878; HPA: Cytosol, supported). Background or off-target binding is possible (general IHC practice). | Review the counterstain and cell boundaries, compare control sections, and verify that the primary antibody produces a plausible cytoplasmic pattern (general IHC practice). |
| Adipocytes or bronchial respiratory epithelial cells stain strongly. | HPA lists these cell types as Not detected (HPA: Adipose tissue, adipocytes; Bronchus, respiratory epithelial cells). Misidentified cells or nonspecific detection could account for the discrepancy (general IHC practice). | Recheck cell identity and compare a control lacking primary antibody; assess endogenous detection activity before assigning that colour to NCF2 (general IHC practice). |
| Diffuse colour obscures which cells are positive. | Broad background can arise from nonspecific reagent binding or excess chromogenic deposition (general IHC practice). It cannot establish the cell-restricted HPA pattern (HPA: tissue IHC). | Compare a control lacking primary antibody; review blocking, washes, antibody dilution and development time as general IHC variables, then rescore only clearly localised cellular signal (general IHC practice). |
| A negative test section is being called NCF2-negative after the positive control also failed. | A failed positive control leaves assay performance unresolved (general IHC practice). The expected positive populations include bone marrow hematopoietic cells and splenic red-pulp cells (HPA: tissue IHC). | Restore a positive-control signal and repeat the affected staining run before making a negative call; document the cell population and cytoplasmic pattern used for scoring (general IHC practice; HPA: Cytosol, supported). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Endometrium | Endothelial cells | High | Protein (IHC) | HPA → |
| Spleen | Cells in red pulp | High | Protein (IHC) | HPA → |
| Lung | Macrophages | Medium | Protein (IHC) | HPA → |
| Lymph node | Non-germinal center cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
Use cell type, cytosolic localisation and matched controls to troubleshoot NCF2 staining in paraffin sections (HPA tissue IHC; HPA subcellular; UniProt P19878 localisation).
Both anti-NCF2 antibodies have paraffin-section IHC images from human tissue (catalog IHC captions); A02476-1 also has mouse and rat spleen images (catalog IHC captions), while M02476-1 lists ICC/IF without an IF figure (catalog applications/images).
A02476-1 lists IHC for human, mouse and rat, with images from human tonsil and mouse and rat spleen (catalog applications/reactivity; A02476-1 IHC captions). M02476-1 lists IHC and ICC/IF for human, mouse and rat, with IHC images from human spleen and tonsil (catalog applications/reactivity; M02476-1 IHC captions).
Which to pick: For tissue IHC across species, choose A02476-1: its own captions document paraffin sections from human tonsil and mouse and rat spleen (A02476-1 IHC captions). For human tissue IHC, M02476-1 offers a rabbit monoclonal antibody with paraffin-section images from spleen and tonsil; choose it for IF/ICC when that listed application is needed, although no IF image is supplied (catalog host/clone/applications/images; M02476-1 IHC captions). Both IHC captions specify paraffin sections and EDTA retrieval, but neither reports the fixative (A02476-1 and M02476-1 IHC captions).