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- Table of Contents
Plan paraffin-section NKX2-2 IHC around the expected nuclear location (UniProt) and reported nuclear and cytoplasmic tissue staining (HPA tissue IHC). Use the tissue examples to choose controls and interpret results in light of presumed off-target binding (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear expected (UniProt); nuclear/cytoplasmic seen (HPA tissue IHC) | |
| Staining pattern | Nuclear/cytoplasmic staining in CNS and pancreas; CNS glia positive (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A04740-2) | |
| Positive control | Caudate+2 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Presumed off-target binding can distort tissue staining (HPA tissue IHC) | |
| Regulation | Expression regulation unannotated (UniProt) | |
| Isoform / epitope | No annotated isoforms; intact 1–273 chain (UniProt) |
The catalog antibody’s IHC protocol (datasheet: A04740-2) is accompanied by published protocols for Ewing sarcoma and neuroendocrine neoplasms (PMC13325908, PMC13518683, PMC8115302).
| Sample | Paraffin-embedded human pancreas cancer tissue; fixative not specified (datasheet A04740-2) |
| Fixation | Image fixative and duration unreported (datasheet A04740-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A04740-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A04740-2) |
| Primary antibody | Rabbit anti-NKX2-2, 2-5 μg/ml (datasheet A04740-2) |
| Primary incubation | Overnight at 4 °C (datasheet A04740-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A04740-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | NKX2-2-positive staining in glial cells of caudate (HPA tissue IHC: Medium). HPA tissue profile: Nuclear and cytoplasmic expression in several tissues, including CNS and pancreas. No signal in the no-primary control. |
NKX2-2 is a nuclear transcription factor with no transmembrane segment (UniProt O95096). In paraffin-section IHC, expect staining in glial cells of the caudate, cerebral cortex, and hippocampus, where HPA reports medium staining (HPA tissue IHC). HPA also describes nuclear and cytoplasmic staining across several tissues, but rates its tissue IHC antibody Approved with low consistency against RNA data and presumed off-target binding (HPA tissue IHC).
| Distinct nuclear staining in glial cells of caudate, cerebral cortex, or hippocampus. | This fits the expected compartment and HPA's medium glial staining in those tissues (UniProt O95096; HPA tissue IHC). Score the identified cell population and nuclear signal; do not treat every stained cell in a positive tissue as confirmed NKX2-2. |
| Strong cytoplasmic staining dominates, with little or no nuclear enrichment. | UniProt places NKX2-2 in the nucleus (UniProt O95096). HPA reports some cytoplasmic tissue staining, so cytoplasm alone does not prove an artefact; a predominantly cytoplasmic result warrants checking specificity and comparing the nuclear pattern in glial cells (HPA tissue IHC). |
| Prominent staining in an HPA-negative cell population, such as adipocytes in adipose tissue. | HPA reports adipocytes as not detected in adipose tissue (HPA tissue IHC). Consider cross-reactivity or endogenous chromogenic detection activity, then compare a no-primary control and the expected glial pattern. HPA's presumed off-target binding makes isolated unexpected staining especially uncertain (HPA tissue IHC). |
| Diffuse colour coats cells or tissue without a clear nuclear boundary. | This is difficult to score as nuclear NKX2-2 (UniProt O95096). General IHC causes include nonspecific reagent binding or residual chromogen-generating activity (standard IHC practice). Check background controls before interpreting weak colour as the low staining HPA reports in some tissues (HPA tissue IHC). |
| No staining is visible in glial cells of a caudate, cerebral cortex, or hippocampus section. | Absence conflicts with HPA's medium glial staining in those tissues, but does not alone establish target absence or assay failure (HPA tissue IHC). Review tissue identity, section quality, controls, and the validated IHC workflow before making a biological call (standard IHC practice). |
| Subcellular location | Nuclear localisation is the primary basis for reading a positive cell (UniProt O95096). HPA's broader nuclear and cytoplasmic tissue description means cytoplasmic colour needs context; it should not replace assessment of nuclear staining in the named glial populations (HPA tissue IHC). |
| Tissue and cell selection | HPA reports medium glial staining in caudate, cerebral cortex, and hippocampus, but only low staining in pancreatic exocrine glandular cells (HPA tissue IHC). Choose a reported medium-staining glial population when judging whether an IHC run produced the expected pattern. |
| Strength of tissue validation | The listed antibody, HPA003468, has Approved IHC status, while the tissue profile notes low staining–RNA consistency and presumed off-target binding (HPA antibody record; HPA tissue IHC). Treat an unexpected compartment or cell type as a finding to verify, rather than independent evidence of NKX2-2 expression. |
| Molecular context | UniProt records one 273-aa chain, no signal peptide, no transmembrane segment, and no annotated isoforms or glycosylation sites (UniProt O95096). These annotations provide no basis here for a secreted or membrane staining pattern and do not establish antigen-retrieval or fixation sensitivity. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected glial nuclei are blank in a reported medium-staining brain region. | Possible assay failure or a tissue-identification or section-quality issue; HPA reports medium glial staining but does not define why an individual run fails (HPA tissue IHC). | Verify tissue and cell identity, inspect the section, and check run controls and the IHC-validated antibody's documented conditions before interpreting the negative result (standard IHC practice). |
| Cytoplasm is stronger than nuclei throughout the section. | The distribution does not align cleanly with UniProt's nuclear localisation, although HPA does describe cytoplasmic tissue staining (UniProt O95096; HPA tissue IHC). | Compare nuclear signal in the reported glial populations and inspect a no-primary control; with HPA's off-target caveat, avoid calling cytoplasm alone a confirmed positive (HPA tissue IHC; standard IHC practice). |
| Cells reported as not detected, such as adipocytes in adipose tissue, stain strongly. | Off-target binding or endogenous detection activity is possible; HPA reports those adipocytes as not detected and acknowledges presumed off-target binding (HPA tissue IHC). | Check the no-primary control and whether the colour follows cell boundaries or the expected glial nuclear pattern; do not assign NKX2-2 expression from this finding alone (standard IHC practice; UniProt O95096). |
| Weak colour appears broadly across the slide and obscures nuclei. | Nonspecific binding or residual endogenous chromogen-generating activity can cause diffuse background in chromogenic IHC (standard IHC practice). | Review blocking and detection controls, reagent exposure, and counterstain visibility; score only interpretable cellular staining against the nuclear expectation (standard IHC practice; UniProt O95096). |
| Pancreatic exocrine cells are weak while brain glial cells stain more clearly. | That contrast is compatible with HPA's low exocrine pancreatic and medium glial staining; it does not establish a pancreas-specific fixation effect (HPA tissue IHC). | Record compartment, cell type, and relative intensity separately. Use the reported medium-staining glial population to assess the run, and keep weak pancreatic staining provisional (HPA tissue IHC). |
| Can this IHC pattern be used as an IF/ICC localisation benchmark? | HPA provides no ICC-IF images or available main subcellular location for NKX2-2; its tissue observations come from IHC (HPA subcellular record; HPA tissue IHC). | Use UniProt's nuclear annotation as the localisation expectation, while treating IF/ICC performance as unverified by the supplied HPA record (UniProt O95096; HPA subcellular record). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Caudate | Glial cells | Medium | Protein (IHC) | HPA → |
| Cerebral cortex | Glial cells | Medium | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot chromogenic IHC for NKX2-2 by checking retrieval, nuclear signal, controls and scoring before interpreting a stained section.
Anti-NKX2-2 IHC images cover human kidney and pancreas samples and mouse and rat brain (catalog IHC captions); IF images cover human kidney and U2OS cells (catalog IF captions).
A04740 has human kidney IHC and IF images (A04740 image captions); A04740-2 has paraffin-section IHC images from human pancreas cancer and prostate cancer and mouse and rat brain, plus IF in U2OS cells (A04740-2 image captions). M04740-1 has a paraffin-section IHC image from human pancreas (M04740-1 IHC caption).
Which to pick: For tissue IHC, choose M04740-1 when a rabbit monoclonal is preferred: its human pancreas image documents paraffin sections, but does not report the fixative (M04740-1 catalog entry and IHC caption). For IF/ICC, choose A04740-2, which lists ICC/IF and shows IF in U2OS cells; A04740 also has a human kidney IF image (A04740-2 and A04740 catalog entries and IF captions). For IHC across the listed species, choose A04740-2: its own paraffin-section captions document human, mouse and rat samples, with EDTA retrieval at pH 8.0 and primary antibody at 2 μg/ml; the fixative is unreported (A04740-2 IHC captions).