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- Table of Contents
Plan chromogenic PKIB IHC in paraffin sections using the tissue staining profile (HPA tissue IHC) and the IHC-validated antibody’s 2–5 μg/ml range (datasheet A12582-3). Compare cytoplasmic staining across cell types and account for possible macrophage background (HPA tissue IHC; standard IHC practice).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Widespread cytoplasmic staining; high in lung macrophages (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A12582-3) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Spleen |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A12582-3) | |
| Caveat | Lung macrophages may show endogenous peroxidase background (HPA tissue IHC; standard IHC practice) | |
| Regulation | Expression regulation not annotated (UniProt) | |
| Isoform / epitope | 2 isoforms; epitope differences unknown; no TM segment (UniProt) |
The catalog antibody protocol uses EDTA pH 8.0 retrieval (datasheet A12582-3); the published placental PKIB IHC protocol uses citrate pH 6.0 retrieval (PMC7782383).
| Sample | Paraffin-embedded human placenta tissue; fixative not specified (datasheet A12582-3) |
| Fixation | Image fixative and duration unreported (datasheet A12582-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A12582-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A12582-3) |
| Primary antibody | Rabbit anti-PKIB, 2-5 μg/ml (datasheet A12582-3) |
| Primary incubation | Overnight at 4 °C (datasheet A12582-3) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A12582-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PKIB-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Ubiquitous cytoplasmic expression. No signal in the no-primary control. |
PKIB should appear predominantly in the cytoplasm of stained cells (HPA: ubiquitous cytoplasmic IHC profile). Strong examples include kidney tubular cells, lung macrophages, and breast myoepithelial cells (HPA: High in each). The tissue IHC assessment is Approved, with medium consistency between staining and RNA data (HPA). PKIB has no annotated transmembrane segment, while UniProt assigns no subcellular location (UniProt Q9C010 topology and subcellular record).
| Cytoplasmic staining is strong in kidney tubular cells or lung macrophages, with recognizable tissue architecture. | This matches two documented high-staining cell populations (HPA: High in kidney tubular cells and lung macrophages). Judge the named cells and their cytoplasm; staining elsewhere in the section alone does not establish the expected result (HPA: tissue IHC profile). |
| A crisp nuclear-only or membrane-rim pattern dominates the cells being scored. | Treat the compartment mismatch as a reason to investigate artefact or antibody specificity (HPA: cytoplasmic IHC profile; UniProt Q9C010: no annotated transmembrane segment). UniProt provides no independent PKIB subcellular annotation, so the HPA pattern is the available location reference (UniProt Q9C010; HPA). |
| Strong signal appears mainly in cells outside the documented high-staining population within a reference tissue. | For example, a kidney section should be evaluated in tubular cells, and a lung section in macrophages (HPA: High in those cells). Staining of other cells warrants a check for cross-reactivity or endogenous detection activity; it cannot by itself be assigned to PKIB (general IHC practice). |
| Color spreads across tissue, extracellular spaces, or areas without discernible cellular borders. | A diffuse field is hard to reconcile with interpretable cytoplasmic staining (HPA: cytoplasmic IHC profile). Compare a no-primary control and inspect washing, blocking, and detection steps to identify background from the staining workflow (general IHC practice). |
| A kidney section shows no signal in tubular cells, or a lung section shows none in macrophages. | These are documented high-staining populations, so a blank result calls for a run-level check before concluding PKIB is absent (HPA: High in kidney tubular cells and lung macrophages). Verify tissue identity, reagent performance, retrieval conditions, and detection controls (general IHC practice). |
| Cell population and tissue choice | HPA reports High staining in adrenal gland and gallbladder glandular cells, breast myoepithelial cells, caudate neurons, cardiomyocytes, kidney tubular cells, lung macrophages, and nasopharyngeal respiratory epithelium (HPA: tissue IHC). Select a documented cell population when judging whether a section behaved as expected. |
| Reference range and validation strength | Prostate glandular cells, ovarian stromal cells, soft-tissue fibroblasts, and skin keratinocytes are Low; spleen red-pulp cells are Not detected (HPA: tissue IHC). These observations describe particular cells, not whole-organ negative controls. HPA rates tissue IHC Approved and reports medium staining–RNA consistency (HPA). |
| Assay and location evidence | The HPA location statement comes from tissue IHC (HPA: ubiquitous cytoplasmic expression). The listed antibody HPA030156 is IHC Approved, while the supplied ICC-IF record has no main location or cell-line images (HPA: antibody and subcellular records). For IF/ICC, use the cytoplasmic IHC pattern as a comparison, not as an independently validated IF pattern. |
| Isoforms and epitope interpretation | UniProt lists PKIB isoforms 1 and 2 but supplies no antibody epitope in this record (UniProt Q9C010: alternative splicing). Whether a given antibody detects both isoforms cannot be inferred here; consult its epitope documentation before interpreting an isoform-specific difference (general IHC practice). |
| Topology and processing | PKIB is a 78-residue chain with no annotated signal peptide, propeptide, transmembrane segment, glycosylation site, or modified residue (UniProt Q9C010). These annotations support caution with a membrane-only interpretation; they do not predict staining intensity or an antigen-retrieval requirement. |
| Paraffin-section workflow | No PKIB-specific fixation sensitivity, retrieval condition, or dilution is supplied (HPA and UniProt records provided). If signal is poor, compare retrieval and detection conditions using the same documented high-staining tissue and appropriate controls (general IHC practice); do not assign a PKIB-specific fixation effect from these sources. |
| Situation | Likely cause | Next action |
|---|---|---|
| No stain in kidney tubular cells or lung macrophages | A high-staining reference population failed to appear (HPA: High in both); tissue identity or an IHC step may need checking (general IHC practice). | Confirm the expected cells are present, then check primary-antibody application, retrieval, chromogen, and control-slide performance (general IHC practice). Interpret the run only after a documented reference population stains. |
| Nuclei dominate while cytoplasm remains pale | The observed compartment conflicts with HPA's cytoplasmic tissue profile (HPA: ubiquitous cytoplasmic expression). The source record does not establish a nuclear PKIB pattern (HPA; UniProt Q9C010: location unannotated). | Compare with a no-primary control and a documented high-staining tissue; review morphology and staining conditions before scoring the nuclear color as PKIB (general IHC practice). |
| Strong color marks unexpected cells in a reference section | Cell identity may have been misread, or cross-reactivity or endogenous detection activity may contribute (general IHC practice). HPA's High calls refer to named populations, such as kidney tubules and lung macrophages (HPA: tissue IHC). | Identify the stained cells morphologically; compare a no-primary control and, if available, an independent antibody before attributing the unexpected population to PKIB (general IHC practice). |
| Diffuse color obscures cell boundaries | Nonspecific background from blocking, washing, or detection can make cytoplasmic signal uninterpretable (general IHC practice; HPA: cytoplasmic profile). | Inspect the no-primary control and reagent-only background; review blocking, wash, and chromogen steps, then score only cells with resolved cytoplasmic staining (general IHC practice). |
| A Low or Not detected reference looks strongly positive | The result conflicts with the reported level for the specific cells: prostate glandular cells are Low and spleen red-pulp cells are Not detected (HPA: tissue IHC). These HPA levels are observations, not absolute exclusion of every signal. | Verify the cell population and compare the same run with a documented High population and background controls; investigate excess signal before treating it as a PKIB expression difference (HPA: tissue IHC; general IHC practice). |
| An IF/ICC image is being used to settle an IHC compartment dispute | The supplied HPA ICC-IF record has no main location or cell-line images, whereas HPA's cytoplasmic statement is from tissue IHC (HPA: subcellular and tissue records). | Base this paraffin-section interpretation on tissue morphology and the documented IHC pattern (HPA: tissue IHC). Treat any IF/ICC result as separate evidence requiring its own validation (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Breast | Myoepithelial cells | High | Protein (IHC) | HPA → |
| Caudate | Neuronal cells | High | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Spleen | Cells in red pulp | Not detected | Protein (IHC) | HPA → |
Troubleshoot PKIB staining in paraffin sections by checking retrieval, cell type, cytoplasmic pattern, and controls before comparing signal intensity.
The IHC-validated anti-PKIB antibody has real chromogenic IHC data from a human paraffin-embedded placenta section (A12582-3 image caption); no IF figure is provided (catalog).
A12582-3 will render with an IHC figure showing human paraffin-embedded placenta tissue (A12582-3 image caption). Its listed applications are IHC and ELISA, and its listed reactivity is human (catalog).
Which to pick: Choose A12582-3, a polyclonal antibody, for human paraffin-section IHC (catalog; A12582-3 image caption). Its caption reports a paraffin-embedded section but does not report the fixative (A12582-3 image caption). No SKU in the payload is listed for IF/ICC or cross-species use (catalog).