This website uses cookies to ensure you get the best experience on our website.
- Table of Contents
Plan PLP2 paraffin-section IHC using the reported cytoplasmic tissue pattern (HPA tissue IHC). The catalog antibody has an IHC dilution range of 2–5 μg/ml (datasheet A06255-1); interpret staining in light of the low consistency between antibody staining and RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | General cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining in glandular cells and hepatocytes (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A06255-1) | |
| Positive control | Cerebellum+4 more · see all | |
| Negative control | Ovary |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A06255-1) | |
| Caveat | Antibody staining and RNA show low consistency (HPA tissue IHC) | |
| Regulation | A4 mRNA peaks in lower colonic crypts (UniProt) | |
| Isoform / epitope | 2 isoforms; epitope coverage and orientation are unspecified (UniProt) |
The catalog antibody protocol uses heat-mediated EDTA retrieval (datasheet A06255-1). The published PLP2 IHC protocols below provide tissue staining conditions (PMC7077595; PMC10642424; PMC6274732; PMC8113544).
| Sample | Paraffin-embedded human adenocarcinoma of the right colon tissue; fixative not specified (datasheet A06255-1) |
| Fixation | Image fixative and duration unreported (datasheet A06255-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A06255-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A06255-1) |
| Primary antibody | Rabbit anti-PLP2, 2-5 μg/ml (datasheet A06255-1) |
| Primary incubation | Overnight at 4 °C (datasheet A06255-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A06255-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PLP2-positive staining in purkinje cells of cerebellum (HPA tissue IHC: High). HPA tissue profile: General cytoplasmic expression. No signal in the no-primary control. |
PLP2 is a four-pass membrane protein (UniProt Q04941 topology). In paraffin-section IHC, expect staining in cell populations reported by HPA, including duodenal glandular cells and kidney tubule cells, both scored High (HPA tissue IHC). HPA describes the tissue pattern as generally cytoplasmic and rates the IHC antibody Approved, while noting low agreement with RNA data and pending external verification (HPA tissue IHC).
| Distinct staining in duodenal glandular cells or kidney tubule cells, with a cytoplasmic or membrane-associated appearance. | This fits HPA High staining in those cells and its general cytoplasmic IHC profile (HPA tissue IHC). Membrane association is consistent with PLP2's four transmembrane segments (UniProt Q04941 topology). Assess signal in the named cells rather than treating every cell in a positive tissue as an expected positive. |
| Predominantly nuclear staining, with little staining in the expected cells. | A predominantly nuclear pattern conflicts with the membrane annotation and reported cytoplasmic tissue pattern (UniProt Q04941 subcellular location; HPA tissue IHC). Treat it as a possible artefact and review detection and controls (general IHC practice); morphology alone cannot identify its cause. |
| Strong staining outside the reported positive cell population, such as in ovarian stroma cells. | HPA reports ovarian stroma cells as Not detected (HPA tissue IHC). Unexpected signal raises possible cross-reactivity or endogenous detection activity (general IHC practice). Check cell identity and appropriate controls before assigning either cause; HPA's low antibody–RNA agreement limits certainty (HPA tissue IHC). |
| A uniform haze or stain across cells and surrounding section, obscuring cell boundaries. | This is difficult to score as cell-specific PLP2 staining (general IHC practice). Review background in a no-primary control, blocking, washing and detection conditions (general IHC practice). HPA's general cytoplasmic profile does not make uniform slide-wide colour a convincing positive pattern (HPA tissue IHC). |
| No visible signal in the named positive cells of an otherwise interpretable section. | Absence in HPA High cells, such as duodenal glandular cells, warrants a run-control check (HPA tissue IHC; general IHC practice). Confirm that the cells are present, then review antibody, retrieval and detection steps (general IHC practice). A failed run does not establish that the specimen lacks PLP2. |
| Membrane topology and IHC appearance | PLP2 has four transmembrane segments and a MARVEL domain spanning residues 19–137 (UniProt Q04941). HPA nevertheless summarizes tissue IHC as generally cytoplasmic (HPA tissue IHC). Interpret apparent cytoplasmic colour alongside the expected cell population; the supplied sources do not specify a finer organelle pattern. |
| Choice of comparison cells | HPA scores Purkinje cells, duodenal and gallbladder glandular cells, kidney tubule cells, hepatocytes, small-intestinal glandular cells and Leydig cells High (HPA tissue IHC). Ovarian stroma cells are Not detected (HPA tissue IHC). These are cell-specific comparisons, not whole-organ pass or fail labels. |
| Intestinal distribution | UniProt reports enrichment in colonic mucosa and the strongest A4 message in the lower half of the crypt along the crypt–villus axis (UniProt Q04941 tissue specificity). This describes message distribution; it does not establish an IHC intensity gradient. HPA separately reports High glandular-cell staining in duodenum and small intestine (HPA tissue IHC). |
| Antibody evidence | The listed rabbit polyclonal antibody, HPA042415, is Approved for IHC, with no ICC status listed (HPA antibodies). HPA describes low consistency between antibody staining and RNA expression and says external verification is pending (HPA tissue IHC). Use its staining profile as a reference that needs controls, not as definitive specificity proof. |
| IF/ICC Q: What localisation should be expected? | A: HPA's subcellular summary says Membrane, but it lists no main location or cell-line ICC-IF images (HPA subcellular). The listed antibody has no ICC status (HPA antibodies). The supplied evidence therefore supports a broad membrane expectation, without an image-backed cell-line pattern or an IF/ICC protocol recommendation. |
| Situation | Likely cause | Next action |
|---|---|---|
| Known HPA High cells appear unstained. | The run, tissue sampling or identification of the expected cells may need checking (general IHC practice). | Locate the named cells and compare a known-positive section processed in the same run; review the antibody, retrieval and detection steps (HPA tissue IHC; general IHC practice). Do not infer a PLP2-specific retrieval requirement from these sources. |
| Colour fills nuclei more strongly than cytoplasm. | The pattern conflicts with HPA's general cytoplasmic IHC description and UniProt's membrane annotation (HPA tissue IHC; UniProt Q04941). | Check the no-primary control and inspect morphology and counterstain before scoring the result (general IHC practice). If nuclear colour persists, record it as discordant rather than calling it expected PLP2 localisation. |
| Diffuse colour obscures expected cells. | Nonspecific background or detection-related colour may be contributing (general IHC practice). | Compare a no-primary control, then review blocking, washing and detection conditions (general IHC practice). Score PLP2 only where cell-specific staining can be separated from background; HPA's cytoplasmic profile alone cannot resolve an obscured slide (HPA tissue IHC). |
| Ovarian stroma cells stain strongly. | That cell population is Not detected in HPA tissue IHC; cross-reactivity or endogenous detection activity is possible (HPA tissue IHC; general IHC practice). | Verify the cell population and compare no-primary and detection controls (general IHC practice). Treat the discrepancy as a specificity question, especially given HPA's reported low antibody–RNA agreement (HPA tissue IHC). |
| The chosen comparison tissue gives only weak staining. | The comparison cells may belong to an HPA Low group, such as parathyroid glandular or bronchial respiratory epithelial cells (HPA tissue IHC). | Compare the same run with named HPA High cells before judging sensitivity (HPA tissue IHC; general IHC practice). Record the cell type and its expected HPA level, since a weak Low-category comparator cannot serve the same purpose as a High-category one. |
| Intestinal staining does not follow a clear crypt gradient. | UniProt's lower-crypt gradient concerns A4 message, while HPA reports glandular-cell protein staining (UniProt Q04941 tissue specificity; HPA tissue IHC). | Score the observed glandular-cell staining and document its position without requiring an RNA-like intensity gradient (HPA tissue IHC; general IHC practice). Check controls if the named HPA High cells lack signal altogether. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebellum | Purkinje cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
| Kidney | Cells in tubules | High | Protein (IHC) | HPA → |
| Liver | Hepatocytes | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Ovary | Ovarian stroma cells | Not detected | Protein (IHC) | HPA → |
Use the paraffin-section example as a starting point for PLP2 IHC, then verify staining against tissue architecture and appropriate controls.
A06255-1 has real IHC data from human paraffin sections (A06255-1 image captions). The catalog provides no IF/ICC figure or nonhuman reactivity (A06255-1 catalog).
A06255-1 is listed for human IHC and shows staining in paraffin sections of right colon adenocarcinoma and cervical cancer (A06255-1 catalog and image captions). Its other IHC captions show human gastric carcinoma and liver cancer; no IF image is supplied (A06255-1 image captions and catalog).
Which to pick: Choose A06255-1 for human paraffin-section IHC: its own captions report EDTA retrieval at pH 8.0 and primary antibody at 2 μg/ml (A06255-1 image captions); the fixative is unreported (A06255-1 image captions). No listed SKU is validated for IF/ICC or nonhuman samples, so this catalog provides no supported pick for either (A06255-1 applications and reactivity). Clonality is unspecified (A06255-1 catalog).