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Plan chromogenic PPP1R12A IHC in paraffin sections using the IHC-validated antibody (datasheet PB9737). Compare staining with the cytoplasmic and membranous tissue pattern (HPA tissue IHC), and check epitope coverage across the 5 reported isoforms (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and membranous staining in most cells (HPA tissue IHC) | |
| Staining pattern | Most cells show cytoplasmic and membranous staining (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet PB9737) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Adipocytes may lack staining despite broad positivity (HPA tissue IHC) | |
| Regulation | Staining intensity regulation is unreported (UniProt) | |
| Isoform / epitope | 5 isoforms; confirm epitope coverage across variants (UniProt) |
Compare the catalog antibody’s citrate pH 6 IHC-P protocol (datasheet PB9737) with published chromogenic IHC methods for cholangiocarcinoma tumor tissue (PMC8210562) and pancreatic tissue (PMC4843125).
| Sample | Paraffin-embedded Human Glioma tissue; fixative not specified (datasheet PB9737) |
| Fixation | Image fixative and duration unreported (datasheet PB9737); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet PB9737) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9737) |
| Primary antibody | Rabbit anti-PPP1R12A, 0.5-1μg/ml (datasheet PB9737) |
| Primary incubation | Overnight at 4 °C (datasheet PB9737) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9737) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PPP1R12A-positive staining in lymphoid tissue of appendix (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic and membranous expression in most cells. No signal in the no-primary control. |
PPP1R12A is a cytoplasmic, stress fiber associated protein without a transmembrane segment (UniProt O14974 topology and subcellular location). In paraffin section IHC, expect cytoplasmic and membranous staining in many cell types, with high staining reported in selected epithelial, neuronal, and lymphoid cells (HPA tissue IHC). The tissue profile is Approved, with medium consistency between antibody staining and RNA expression; treat individual staining results as observations rather than absolute expression rules (HPA tissue IHC).
| Cytoplasmic staining, sometimes outlining cells, in glandular epithelium or other expected cells. | This fits HPA’s cytoplasmic and membranous IHC profile. High staining is reported in breast and endometrial glandular cells, among others (HPA tissue IHC). Judge intensity against a control section stained in the same run (general IHC practice). |
| Predominantly nuclear staining with little cytoplasmic signal. | A nuclear dominant IHC pattern is discordant with the reported tissue profile (HPA tissue IHC). Nucleolar localization is uncertain in ICC-IF, so it does not establish a nuclear IHC pattern (HPA subcellular). Check staining controls before interpreting this as PPP1R12A. |
| Strong adipocyte staining while expected positive cells also stain. | Adipocytes are listed as not detected, whereas several glandular and neuronal cell groups are high (HPA tissue IHC). Consider nonspecific antibody binding or endogenous chromogen activity; check a no primary control and compare cell types on the same section (general IHC practice). |
| Broad, even chromogen deposit across cells and extracellular areas. | This distribution is hard to assign to the reported cytoplasmic and membranous pattern (HPA tissue IHC). Review the no primary control, blocking, washes, and detection steps for background (general IHC practice); background alone cannot identify its cause. |
| No staining in a breast glandular or bronchial epithelial control. | Both cell groups have high reported staining, so an absent signal calls for a run level check (HPA tissue IHC). Confirm that the expected cells are present and assess antibody, retrieval, detection, and counterstain using the assay instructions (general IHC practice). |
| Compartment and morphology | UniProt places PPP1R12A in cytoplasm and along actomyosin filaments; HPA tissue IHC reports cytoplasmic and membranous expression (UniProt O14974 subcellular location; HPA tissue IHC). Fine filament detail may be difficult to resolve in chromogenic sections (general IHC practice). |
| Cell type and tissue | HPA reports high staining in appendix lymphoid tissue, bronchial respiratory epithelium, cerebral cortical neurons, and several glandular cell groups; adipocytes are not detected (HPA tissue IHC). A negative adipocyte area is a useful comparison, but it cannot replace a positive control (general IHC practice). |
| Strength of IHC evidence | The tissue profile is Approved and has medium antibody staining versus RNA consistency (HPA tissue IHC). HPA071956 is IHC Approved; no IHC status is supplied for HPA041296 (HPA antibodies). These labels support pattern comparison without guaranteeing every specimen or antibody result. |
| Isoforms and antibody recognition | UniProt lists five PPP1R12A isoforms (UniProt O14974 isoforms). The payload gives no epitope or isoform recognition data for an IHC antibody, so differences among isoforms cannot be assigned from staining alone. |
| IF/ICC Q&A: what localization is supported? | Mainly cytosol and actin filaments; nucleoli and plasma membrane are additional uncertain locations (HPA subcellular ICC-IF). Use those observations to interpret IF/ICC images, while keeping chromogenic tissue interpretation anchored to the HPA tissue IHC profile. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected positive cells are blank. | The run may have failed, or the sampled section may lack the relevant cells; HPA lists high staining for breast glandular and bronchial respiratory epithelial cells (HPA tissue IHC). | Verify cell identity and a same run positive control. Review antibody use, retrieval, detection, and counterstain against the assay instructions (general IHC practice). |
| Adipocytes stain strongly. | This conflicts with HPA’s not detected adipocyte observation; nonspecific binding or endogenous chromogen activity is possible (HPA tissue IHC; general IHC practice). | Compare an adjacent no primary control, inspect deposit distribution, and review blocking and detection controls (general IHC practice). |
| Signal is mainly nuclear. | It differs from the cytoplasmic and membranous tissue profile; ICC-IF nucleolar localization is uncertain (HPA tissue IHC; HPA subcellular). | Recheck the scored cell type and controls. Avoid scoring isolated nuclear signal as a confirmed positive without supporting cytoplasmic staining (general IHC practice). |
| Background obscures cell borders. | Excess chromogen or nonspecific detection can obscure the reported cytoplasmic and membranous distribution (general IHC practice; HPA tissue IHC). | Inspect the no primary control and review blocking, wash, detection, and chromogen steps before scoring compartments (general IHC practice). |
| Staining varies between tissue regions. | Cell composition may differ across regions; HPA reports high, low, and not detected staining across specified cell groups (HPA tissue IHC). | Score comparable cell types separately and record intensity and the proportion of stained cells. Compare with controls processed in the same run (general IHC practice). |
| Two antibodies give different patterns. | HPA071956 has IHC Approved status, while no IHC status is supplied for HPA041296; this record cannot establish the cause of disagreement (HPA antibodies). | Compare each result with HPA’s tissue compartments and cell types, then check each antibody’s controls and assay instructions before assigning specificity (HPA tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Lymphoid tissue | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Endometrium | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshooting chromogenic IHC for PPP1R12A in paraffin sections, with one companion IF/ICC question.
The catalog shows human glioma paraffin-section IHC, human placenta staining, and SiHa-cell IF/ICC images (PB9737, M01743-1, and PA1681 image captions). Listed reactivity spans human, monkey, mouse, and rat (catalog reactivity).
PB9737 shows human glioma paraffin-section IHC, while M01743-1 shows human placenta staining and lists IHC as an application (respective image captions; M01743-1 catalog applications). PA1681 shows IF/ICC in SiHa cells and lists human, monkey, mouse, and rat reactivity (PA1681 image caption; catalog reactivity).
Which to pick: For chromogenic tissue IHC, choose PB9737 for its documented human paraffin-section staining with citrate retrieval and DAB detection; its fixative is unreported (PB9737 image caption). M01743-1 offers a human-reactive rabbit monoclonal with a placenta IHC image, though its caption does not report processing conditions (M01743-1 catalog description, reactivity, applications, and image caption). For IF/ICC, choose PA1681 for its SiHa-cell image; for work across species, PB9737 lists human, monkey, mouse, and rat reactivity, but its pictured tissue IHC is human only (PA1681 image caption and applications; PB9737 catalog reactivity and image caption).