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- Table of Contents
Plan PRKG1 chromogenic IHC in paraffin sections using the catalog antibody's 2–5 μg/mL dilution range (datasheet A01708-3). Use the cytoplasmic tissue pattern and medium staining in adipocytes to guide assessment (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | General cytoplasmic staining (HPA tissue IHC) | |
| Staining pattern | Medium cytoplasmic staining in adipocytes (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01708-3) | |
| Positive control | Adipose tissue+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A01708-3) | |
| Caveat | Antibody staining and RNA show medium consistency (HPA tissue IHC) | |
| Regulation | Primarily expressed in lung and placenta (UniProt) | |
| Isoform / epitope | 3 isoforms; check antibody epitope coverage (UniProt) |
The catalog antibody uses EDTA retrieval for IHC on paraffin sections (datasheet: A01708-3). Three published PRKG1 IHC protocols provide additional conditions (PMC13446705; PMC7454216; PMC8131144).
| Sample | Paraffin-embedded mouse lung tissue; fixative not specified (datasheet A01708-3) |
| Fixation | Image fixative and duration unreported (datasheet A01708-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01708-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01708-3) |
| Primary antibody | Rabbit anti-PRKG1, 2-5μg/ml (datasheet A01708-3) |
| Primary incubation | Overnight at 4 °C (datasheet A01708-3) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01708-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PRKG1-positive staining in adipocytes of adipose tissue (HPA tissue IHC: Medium). HPA tissue profile: General cytoplasmic expression. No signal in the no-primary control. |
PRKG1 should appear mainly in the cytoplasm (UniProt Q13976: cytoplasm; HPA tissue IHC: general cytoplasmic expression). HPA reports medium staining in adipocytes, respiratory epithelial cells, glial cells, and several other sampled cell types (HPA tissue IHC). Its tissue IHC profile is rated Enhanced, with medium consistency between staining and RNA expression (HPA tissue IHC: reliability). PRKG1 has no transmembrane segment (UniProt Q13976: topology).
| Cytoplasmic chromogen in adipocytes or bronchial respiratory epithelial cells, with discernible cell boundaries. | This fits the reported compartment and sampled cell types; HPA rates each example Medium (HPA tissue IHC: profile; positive tissues). Judge intensity against the chosen tissue and its negative control, since staining alone does not establish antibody specificity (general IHC practice). |
| Predominantly nuclear staining, with little discernible cytoplasmic signal. | A nuclear dominant pattern conflicts with the reported cytoplasmic IHC profile (HPA tissue IHC: profile). Consider nonspecific binding, counterstain confusion, or detection artefact (general IHC practice). Recheck compartment assignment before scoring cells as PRKG1 positive. |
| Strong staining confined to a cell population outside the expected pattern for the sampled tissue. | Question cross-reactivity or endogenous detection activity (general IHC practice). HPA reports particular sampled cell types, but its empty negative list does not prove other cells lack PRKG1 (HPA tissue IHC: positive and negative lists). Confirm cell identity and compare controls before calling a new pattern. |
| Diffuse chromogen over cells and extracellular areas, obscuring cell boundaries. | The distribution cannot be confidently assigned to cytoplasm (HPA tissue IHC: profile). Excess background can arise from detection activity or insufficient blocking or washing (general IHC practice); interpret the tissue only after a negative control shows whether the haze depends on primary antibody. |
| No cytoplasmic signal in a reported Medium tissue and cell type. | For example, absent adipocyte staining falls short of the HPA observation (HPA tissue IHC: adipose tissue, Medium). Check that the expected cells are present, then assess the run controls and antibody conditions (general IHC practice). A failed run cannot establish biological absence. |
| Compartment and membrane association | PRKG1 is cytoplasmic and lacks a transmembrane segment (UniProt Q13976: subcellular location; topology). UniProt also notes colocalization with TRPC7 at the plasma membrane; a possible edge associated signal should therefore be evaluated alongside the cytoplasmic pattern, rather than treated as proof of a membrane spanning protein (UniProt Q13976: subcellular location). |
| Tissue and cell context | HPA records Medium staining in adipocytes, adrenal and breast glandular cells, bronchial respiratory epithelial cells, caudate glial cells, and cerebellar granular layer cells (HPA tissue IHC: positive tissues). It records Low staining in salivary glandular, bladder urothelial, and vaginal squamous epithelial cells (HPA tissue IHC: low tissues). These are observations, not universal negative controls. |
| Antibody evidence | HPA lists HPA007699 as IHC Approved and CAB009629 as IHC Enhanced (HPA antibodies). The overall tissue profile is Enhanced but has medium staining to RNA consistency (HPA tissue IHC: reliability). Record the actual antibody used when comparing images; a validation label does not resolve every ambiguous cell or compartment (general IHC practice). |
| Isoforms and processing | UniProt lists three isoforms, Alpha, Beta, and 3, and no signal peptide or propeptide (UniProt Q13976: isoforms; processing). An antibody's isoform coverage depends on its mapped epitope; no epitope information is supplied here, so the staining cannot be assigned to an individual isoform. |
| IF/ICC Q: What pattern should I expect? | A: HPA reports approved cytosol and vesicle localisation in ICC-IF images from HEK293, U-251MG, and U2OS (HPA subcellular; cell lines). That IF observation can help assess compartment plausibility, while paraffin section IHC remains the application addressed here. |
| Antigen retrieval | Retrieval conditions can affect chromogenic IHC generally (general IHC practice). The supplied HPA and UniProt records give no PRKG1 specific retrieval or fixation sensitivity, so optimize against a reported positive tissue and controls without attributing a change to a documented PRKG1 fixation effect. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected cytoplasmic staining is absent in a reported positive sample. | The expected cell population may be missing, or the staining run may have failed (HPA tissue IHC: positive tissues; general IHC practice). | Verify cell identity on the section; inspect positive and negative run controls, then review the antibody dilution, retrieval, and detection steps as general IHC checks (general IHC practice). Do not infer PRKG1 absence from one failed section. |
| Nuclei stain more strongly than cytoplasm. | That pattern disagrees with the general cytoplasmic IHC profile (HPA tissue IHC: profile); nonspecific staining or counterstain confusion is possible (general IHC practice). | Compare the primary omitted control and counterstain, then reassess staining within cell boundaries (general IHC practice). Report unresolved nuclear dominant staining as atypical, rather than scoring it as the expected PRKG1 pattern. |
| Low level urothelial or squamous staining is called a failed positive. | HPA records Low staining in bladder urothelial and vaginal squamous epithelial cells (HPA tissue IHC: low tissues). | Use a tissue and cell type reported as Medium for the positive comparison, such as adipocytes or bronchial respiratory epithelium (HPA tissue IHC: positive tissues). Keep the Low observation distinct from an absent signal. |
| Broad haze or staining persists when the primary antibody is omitted. | Primary independent chromogen may reflect endogenous detection activity or background from detection reagents (general IHC practice). | Check the detection chemistry and appropriate blocking and washing controls for the tissue (general IHC practice). Reassess PRKG1 localisation only after cell boundaries and cytoplasm are readable. |
| An unexpected cell population stains strongly. | Cross-reactivity or detection background is possible (general IHC practice), while HPA provides no confirmed negative cell list for this record (HPA tissue IHC: negative list). | Confirm tissue anatomy and cell identity; compare a primary omitted control and, where available, staining with an independently validated antibody (general IHC practice; HPA antibodies). Describe unresolved staining as unexpected, not definitively false. |
| Two antibodies produce different cellular patterns. | Their HPA IHC statuses differ, and epitope coverage is unspecified here (HPA antibodies; UniProt Q13976: isoforms). | Record each antibody identity and compare the same compartment, tissue cells, and run controls (general IHC practice). Prefer conclusions supported by the cytoplasmic HPA profile; do not assign the discrepancy to an isoform without epitope evidence. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Lymphoid tissue | Medium | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: PRKG1 is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot PRKG1 staining in paraffin sections by checking retrieval, tissue preservation, cellular localisation, controls and scoring before interpreting chromogenic signal.
A01708-3 has IHC images from paraffin sections of mouse and rat lung and human breast cancer, plus an IF image from U20S cells (A01708-3 image captions).
A01708-3 lists IHC, IF, and ICC applications and human, mouse, and rat reactivity (catalog applications; catalog reactivity). Its images show paraffin-section IHC in mouse and rat lung and human breast cancer, and IF in U20S cells (A01708-3 image captions).
Which to pick: For tissue IHC, choose A01708-3: its images document paraffin sections with EDTA pH 8 retrieval; the fixative is unreported (A01708-3 IHC image captions). For IF/ICC, A01708-3 lists both applications and has a U20S cell IF image (catalog applications; A01708-3 IF image caption). For cross-species IHC, A01708-3 lists human, mouse, and rat reactivity and has IHC images from all three; clonality is unreported (catalog reactivity; A01708-3 IHC image captions; catalog clone field).