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- Table of Contents
Plan PVR staining in paraffin sections using the IHC-validated antibody and chromogenic detection. Compare high-staining cardiomyocytes or decidual cells with unstained adipocytes, and score membrane and cytoplasmic signal (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Membrane and cytoplasmic staining in several tissues (HPA tissue IHC) | |
| Staining pattern | Membranous and cytoplasmic staining across several tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M00664-2) | |
| Positive control | Heart muscle+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Secreted variants may complicate tissue staining (HPA tissue IHC) | |
| Regulation | No specific regulator annotated (UniProt) | |
| Isoform / epitope | 4 isoforms; check extracellular vs cytoplasmic epitope (UniProt) |
The catalog antibody has an IHC-P protocol (datasheet: M00664-2); a published lung squamous cell carcinoma TMA study provides a chromogenic comparison (PMC9352965).
| Sample | Paraffin-embedded human colorectal adenocarcinoma tissue; fixative not specified (datasheet M00664-2) |
| Fixation | Image fixative and duration unreported (datasheet M00664-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M00664-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M00664-2) |
| Primary antibody | Mouse monoclonal (clone 5I13D1) anti-PVR, 2 μg/ml (datasheet M00664-2) |
| Primary incubation | Overnight at 4 °C (datasheet M00664-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M00664-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PVR-positive staining in cardiomyocytes of heart muscle (HPA tissue IHC: High). HPA tissue profile: Membrane and cytoplasmic expression in several tissues. Positivity in plasma. No signal in the no-primary control. |
PVR is a membrane protein with an extracellular region at residues 21–343 and a cytoplasmic tail at 368–417; a secreted form is also annotated (UniProt P15151 topology; UniProt P15151 subcellular). In paraffin tissue sections, expect membrane and cytoplasmic staining in selected cells, especially cardiomyocytes and placental decidual cells (HPA tissue IHC: High). HPA rates the tissue pattern Approved, with medium consistency between staining and RNA expression (HPA tissue IHC reliability).
| Membrane and cytoplasmic staining in cardiomyocytes or placental decidual cells. | This matches the reported compartments and two High staining examples (HPA tissue IHC). Score the specified cells and compartments separately; intensity elsewhere need not match them because HPA reports Medium, Low and Not detected results in other cell types (HPA tissue IHC). |
| Staining confined to nuclei in an otherwise positive paraffin tissue section. | Nuclear-only tissue IHC is outside HPA's reported membrane and cytoplasmic tissue pattern (HPA tissue IHC). Review morphology, counterstain and controls before calling it PVR. Nucleoplasm is an approved ICC-IF location, which does not establish a nuclear tissue IHC pattern (HPA subcellular). |
| Strong staining in adipocytes or bone marrow hematopoietic cells. | These specific cells were Not detected in HPA tissue IHC (HPA tissue IHC). Check whether the signal follows the intended cells and compartments; cross-reactivity or endogenous detection activity is possible (general IHC practice). Do not infer that every cell in either tissue must be negative. |
| Uniform haze across cells and spaces, without a recognizable membrane or cellular pattern. | This is difficult to reconcile with HPA's cell-specific tissue pattern (HPA tissue IHC). Check the negative control and detection background (general IHC practice). Because HPA reports plasma positivity and UniProt annotates secretion, extracellular signal alone does not prove an artefact (HPA tissue IHC; UniProt P15151 subcellular). |
| No staining in cardiomyocytes or placental decidual cells. | These are High examples and useful positive comparators (HPA tissue IHC). If both sample and comparator are blank, first examine the shared IHC workflow (general IHC practice). A blank test section alone cannot distinguish a technical failure from a biological difference; HPA reliability is Approved with medium consistency (HPA tissue IHC reliability). |
| Membrane topology and epitope location | PVR has extracellular residues 21–343, a transmembrane segment at 344–367 and a cytoplasmic tail at 368–417 (UniProt P15151 topology). The supplied record does not map an antibody epitope, so topology cannot predict which compartment an individual antibody will favor in a section. |
| Secreted form and plasma staining | UniProt annotates PVR as secreted as well as membrane-localized (UniProt P15151 subcellular). HPA reports positivity in plasma and cautions that at least one secreted variant can complicate RNA–protein comparisons (HPA tissue IHC). Interpret extracellular color with cellular morphology and controls. |
| Isoforms and processing | Four isoforms—Alpha, Beta, Gamma and Delta—are listed, and a signal peptide spans residues 1–20 (UniProt P15151 isoforms; UniProt P15151 processing). Without an epitope map or isoform-specific IHC evidence, do not assign a staining pattern to one isoform or assume how processing affects detection. |
| Retrieval and detection conditions | For paraffin IHC, check that antigen retrieval, blocking, primary antibody dilution, chromogenic detection and counterstain follow the selected validated workflow (general IHC practice). Neither HPA tissue levels nor UniProt topology establishes a PVR-specific retrieval requirement or fixation sensitivity. |
| IF/ICC Q&A: should the same compartments appear? | HPA ICC-IF lists nucleoplasm and vesicles as approved locations and plasma membrane as supported (HPA subcellular). Tissue IHC instead reports membrane and cytoplasmic expression (HPA tissue IHC). Interpret each application against its own evidence; the supplied ICC-IF record provides no IF protocol option. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected positive tissue is blank. | A missing primary or detection step, ineffective retrieval, or an unsuitable working dilution may suppress chromogenic signal (general IHC practice). | Run a positive comparator containing cardiomyocytes or placental decidual cells, both High in HPA tissue IHC (HPA tissue IHC); verify each workflow step and the chosen antibody's own IHC instructions (general IHC practice). |
| Most of the section shows diffuse brown background. | Nonspecific binding or detection background may obscure cellular staining (general IHC practice). HPA's plasma positivity means some extracellular signal may also be biological (HPA tissue IHC). | Inspect a negative control, check blocking and detection steps, and judge signal against recognizable cells and compartments (general IHC practice); do not score diffuse color alone as PVR. |
| Nuclei dominate the tissue IHC image. | The signal does not match HPA's tissue membrane and cytoplasmic profile (HPA tissue IHC); the approved nucleoplasmic location comes from ICC-IF (HPA subcellular). | Confirm section morphology and counterstain, compare the negative control, and seek membrane or cytoplasmic staining in a High comparator before assigning tissue IHC positivity (HPA tissue IHC; general IHC practice). |
| Unexpected cells stain strongly. | Cell-specific differences are possible, but signal in HPA Not detected adipocytes or bone marrow hematopoietic cells also raises possible cross-reactivity or endogenous detection activity (HPA tissue IHC; general IHC practice). | Identify the stained cell type, compare a negative control, and check whether staining has a credible membrane or cytoplasmic distribution (HPA tissue IHC; general IHC practice). |
| Only extracellular material stains. | A secreted form and plasma positivity could contribute (UniProt P15151 subcellular; HPA tissue IHC); nonspecific detection remains another possibility (general IHC practice). | Compare extracellular signal with the negative control and with staining in identifiable positive cells (general IHC practice; HPA tissue IHC). Report the observed compartment rather than treating extracellular color as proof of cell-surface PVR. |
| A tissue or cell type stains less than expected from RNA data. | HPA reports low tissue RNA specificity, while its antibody staining has medium consistency with RNA; a secreted variant can place protein and RNA in different locations (HPA tissue IHC reliability; HPA tissue IHC RNA specificity). | Base the IHC interpretation on the observed cell type, compartment and controls (general IHC practice). Use HPA's cell-specific protein examples as comparators rather than requiring RNA abundance to predict staining intensity (HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data. At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Heart muscle | Cardiomyocytes | High | Protein (IHC) | HPA → |
| Placenta | Decidual cells | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Caudate | Glial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Basal cells | Not detected | Protein (IHC) | HPA → |
| Fallopian tube | Ciliated cells (cell body) | Not detected | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot PVR staining in paraffin sections by checking retrieval, compartment, controls and scoring before interpreting chromogenic signal.
The catalog shows paraffin-section IHC images for human colorectal adenocarcinoma and liver cancer, plus mouse liver cancer (catalog IHC captions); IF/ICC images cover A431 and SiHa cells (catalog IF captions).
M00664-2 and M00664-1 each have human colorectal adenocarcinoma paraffin-section IHC images; M00664-3 has human and mouse liver cancer paraffin-section IHC images (each SKU’s IHC captions). A00664-2 and A00664-4 each have human liver cancer paraffin-section IHC images, with IF/ICC images in A431 and SiHa cells, respectively (each SKU’s IHC and IF captions).
Which to pick: For human tissue IHC, choose among the five SKUs by the tissue shown in each SKU’s own paraffin-section caption; each caption reports EDTA retrieval at pH 8.0, but does not report the fixative (catalog IHC captions). For IF/ICC, choose A00664-2 for A431 cells or A00664-4 for SiHa cells; both are rabbit antibodies listed for IF and ICC (catalog applications and IF captions). For human and mouse tissue IHC, consider mouse monoclonal M00664-3 first because its own captions show IHC in both species; M00664-1 and M00664-2 also list human and mouse reactivity, while their shown IHC images are human (catalog reactivity, clone fields and IHC captions).