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- Table of Contents
Plan chromogenic PVR IHC in paraffin sections around membrane and cytoplasmic staining (HPA tissue IHC). Compare high staining in heart cardiomyocytes and placental decidual cells with an undetected tissue, then score cell types and compartments (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Membrane and cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Membrane and cytoplasmic staining in several tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M00664-2) | |
| Positive control | Heart muscle+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific). Selected-image fixative and duration unreported (datasheet M00664-2); verify before use. | |
| Caveat | A secreted variant may contribute to plasma positivity (HPA tissue IHC) | |
| Regulation | Expression regulation unreported (UniProt) | |
| Isoform / epitope | 4 isoforms; check whether the epitope is extracellular or cytoplasmic (UniProt) |
The catalog antibody protocol and 2 published PVR IHC protocols provide starting points for paraffin sections (datasheet M00664-2; PMC13195874; PMC9352965).
| Sample | Paraffin-embedded human colorectal adenocarcinoma tissue; fixative not specified (datasheet M00664-2) |
| Fixation | Image fixative and duration unreported (datasheet M00664-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M00664-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M00664-2) |
| Primary antibody | Mouse monoclonal (clone 5I13D1) anti-PVR, 2 μg/ml (datasheet M00664-2) |
| Primary incubation | Overnight at 4 °C (datasheet M00664-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M00664-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PVR-positive staining in cardiomyocytes of heart muscle (HPA tissue IHC: High). HPA tissue profile: Membrane and cytoplasmic expression in several tissues. Positivity in plasma. No signal in the no-primary control. |
PVR is a cell membrane protein with a secreted form; its extracellular region spans residues 21–343 (UniProt P15151 topology and subcellular annotation). In paraffin IHC, expect membrane and cytoplasmic staining in several tissues, including strong staining of cardiomyocytes and placental decidual cells (HPA tissue IHC). HPA rates the tissue pattern Approved, with medium consistency between staining and RNA data; secretion complicates that comparison (HPA tissue IHC).
| Distinct membrane staining, with some cytoplasmic staining, in cardiomyocytes or placental decidual cells (HPA tissue IHC). | This matches HPA’s tissue profile and its High staining calls for those cells (HPA tissue IHC). Score the named cells and their compartments separately; cytoplasmic signal can be part of the observed pattern (HPA tissue IHC). |
| Only strong nuclear staining appears in a paraffin section, without a discernible membrane or cytoplasmic pattern. | This is discordant with the reported tissue IHC pattern (HPA tissue IHC). Check the antibody control and detection background before calling it PVR; HPA’s nucleoplasm annotation comes from ICC-IF, a different application (HPA subcellular ICC-IF; standard IHC practice). |
| Prominent staining appears in adipocytes or bone marrow hematopoietic cells. | HPA reports PVR as Not detected in those cell populations (HPA tissue IHC). Treat the result as suspect and check for cross-reactivity or endogenous detection activity with appropriate controls (standard IHC practice). |
| Chromogen spreads diffusely across tissue or appears in compartments without clear cell boundaries. | That distribution cannot establish a cell-specific PVR pattern against HPA’s membrane and cytoplasmic tissue profile (HPA tissue IHC). Review no-primary and detection controls, blocking, washes, and exposure time before scoring (standard IHC practice). |
| No staining is visible in cardiomyocytes or placental decidual cells in a section intended as a positive control. | The absence conflicts with HPA’s High calls for those cells (HPA tissue IHC). Verify tissue identity and cellular preservation, then check retrieval, antibody dilution, detection, and counterstain against the validated IHC procedure (standard IHC practice). |
| Membrane topology (UniProt P15151 topology) | PVR has an extracellular region at residues 21–343, a membrane segment at 344–367, and a cytoplasmic region at 368–417 (UniProt P15151 topology). Epitope location matters when interpreting accessible staining, but no catalog antibody epitope is supplied. |
| Secreted protein and tissue distribution (UniProt P15151 subcellular annotation; HPA tissue IHC) | UniProt also annotates PVR as secreted, and HPA reports positivity in plasma (UniProt P15151 subcellular annotation; HPA tissue IHC). HPA cautions that a secreted variant can make tissue RNA and protein locations differ (HPA tissue IHC). |
| Isoforms (UniProt P15151 isoforms) | Four isoforms—Alpha, Beta, Gamma, and Delta—are listed (UniProt P15151 isoforms). Without an antibody epitope or isoform validation in the supplied evidence, a stain cannot be assigned to one isoform (UniProt P15151 isoforms). |
| Evidence strength (HPA tissue IHC; HPA antibody validation) | The tissue IHC profile is Approved with medium RNA–protein consistency (HPA tissue IHC). HPA012568 and HPA064739 are individually Approved for IHC; that status does not establish an Enhanced IHC pattern (HPA antibody validation). |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive-control tissue shows no PVR signal. | The observed absence conflicts with HPA’s High cardiomyocyte and decidual-cell calls; the technical cause remains undetermined (HPA tissue IHC). | Confirm the named cells are present, then review retrieval, catalog antibody dilution, detection reagents, and control results against the IHC procedure (standard IHC practice). |
| Signal is weak in a tissue chosen as a positive control. | Expected levels vary: adrenal gland and colon glandular cells are Medium, while lung macrophages are Low (HPA tissue IHC). | Compare the correct cell population and HPA level before changing conditions; use a High population when a stronger benchmark is needed (HPA tissue IHC; standard IHC practice). |
| Adipocytes or marrow hematopoietic cells stain strongly. | Both are listed as Not detected, so cross-reactivity or endogenous detection activity should be investigated (HPA tissue IHC; standard IHC practice). | Review no-primary and detection controls, blocking, and whether the signal follows the expected membrane and cytoplasmic profile (HPA tissue IHC; standard IHC practice). |
| Background obscures cell borders throughout the section. | Diffuse chromogen prevents reliable assignment to HPA’s membrane and cytoplasmic tissue pattern (HPA tissue IHC). | Check no-primary background, washes, blocking, antibody dilution, and chromogen development under the validated IHC workflow (standard IHC practice). |
| A nuclear-only IHC result seems to match published PVR localisation. | HPA lists nucleoplasm, vesicles, and plasma membrane for ICC-IF, while its tissue IHC profile is membrane and cytoplasmic (HPA subcellular ICC-IF; HPA tissue IHC). | Interpret the paraffin section against tissue IHC evidence and check controls before accepting nuclear-only staining (HPA tissue IHC; standard IHC practice). |
| Q: How should an IF/ICC image with nuclear or vesicular signal be read? | HPA approves nucleoplasm and vesicles and supports plasma membrane localisation in ICC-IF images (HPA subcellular ICC-IF). | A: Interpret that image using HPA’s ICC-IF localisation and antibody-specific ICC validation; HPA012568 is Uncertain for ICC (HPA subcellular ICC-IF; HPA antibody validation). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data. At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Heart muscle | Cardiomyocytes | High | Protein (IHC) | HPA → |
| Placenta | Decidual cells | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Caudate | Glial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Basal cells | Not detected | Protein (IHC) | HPA → |
| Fallopian tube | Ciliated cells (cell body) | Not detected | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Not detected | Protein (IHC) | HPA → |
Use the IHC evidence below to troubleshoot PVR staining in paraffin sections; the IF entry addresses the separate microscopy workflow.
Anti-PVR antibodies have IHC images from human cancer paraffin sections and mouse liver cancer paraffin sections (catalog IHC captions); IF images show A431 and SiHa cells (catalog IF captions).
M00664-1 and M00664-2 have IHC images from human colorectal adenocarcinoma, while M00664-3 has images from human and mouse liver cancer paraffin sections (respective IHC captions). A00664-2 has IHC images from human liver and prostate cancer and an IF image from A431 cells; A00664-4 has a human liver cancer IHC image and a SiHa cell IF image (respective IHC and IF captions).
Which to pick: For human tissue IHC, choose among the five SKUs using the paraffin-section images for the relevant tissue; A00664-2 lists 1–2 μg/ml and A00664-4 lists 2–5 μg/ml for IHC (catalog applications, IHC captions and dilution listings). For IF/ICC, choose A00664-2 or A00664-4: both list IF and ICC, with cell-image examples for A431 and SiHa respectively (catalog applications and IF captions). For human and mouse tissue IHC, M00664-3 has the strongest direct image support, with paraffin-section examples in both species; it is a mouse monoclonal antibody, and the IHC captions do not report the fixative (catalog clone, reactivity and IHC captions).