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- Table of Contents
Plan chromogenic RANGAP1 IHC in paraffin sections with the catalog antibody at 2–5 μg/ml (datasheet A02771-2). Assess nuclear, nuclear membrane and cytoplasmic staining (HPA tissue IHC), allowing for mitotic redistribution to spindles and kinetochores (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear, nuclear membrane and cytoplasmic staining (HPA tissue IHC) | |
| Staining pattern | All cells: nuclear, nuclear membrane and cytoplasmic (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A02771-2) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A02771-2) | |
| Caveat | Mitotic cells may show spindle and kinetochore staining (UniProt) | |
| Regulation | Testis-enhanced RNA expression (HPA tissue RNA) | |
| Isoform / epitope | 0 annotated isoforms; no signal peptide (UniProt) |
The catalog antibody has an IHC-P protocol (datasheet A02771-2). These published RANGAP1 IHC protocols provide conditions for lymphoma, spinal cord, and brain tissue (PMC3819250; PMC5427168; PMC5595097).
| Sample | Paraffin-embedded human colorectal cancer tissue; fixative not specified (datasheet A02771-2) |
| Fixation | Image fixative and duration unreported (datasheet A02771-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A02771-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02771-2) |
| Primary antibody | Rabbit anti-RANGAP1, 2-5 μg/ml (datasheet A02771-2) |
| Primary incubation | Overnight at 4 °C (datasheet A02771-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A02771-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | RANGAP1-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Distinct expression in the nuclei, nuclear membrane and cytoplasm in all cells. No signal in the no-primary control. |
RANGAP1 staining should appear in the nucleus, nuclear membrane and cytoplasm across many cell types (HPA: tissue IHC profile; reliability Supported). A nuclear rim is consistent with its nuclear envelope location; interphase cytoplasmic staining is also expected (UniProt P46060: subcellular location). RANGAP1 has no transmembrane segment, so a membrane-like rim here refers to the nuclear envelope, not the cell surface (UniProt P46060: topology).
| Nuclear rim with nuclear and cytoplasmic staining in glandular or neuronal cells. | This fits the reported tissue pattern (HPA: tissue IHC profile). High staining is documented in colon glandular cells and cerebral cortex neuronal cells (HPA: High). Judge the rim in relation to the counterstained nucleus; cytoplasmic staining alone does not rule out RANGAP1 (UniProt P46060: interphase location). |
| Strong cell-surface outlines without a nuclear rim or convincing intracellular staining. | Treat this as a compartment mismatch requiring review, since the reported membrane location is the nuclear envelope and RANGAP1 lacks a transmembrane segment (UniProt P46060: subcellular location; topology). Compare with a known-positive tissue and the detection controls before interpreting it as specific staining (general IHC practice). |
| The strongest signal is in adipocytes, while expected positive cells stain weakly. | This distribution warrants a specificity check: adipocytes are listed as low, whereas several glandular, neuronal and hematopoietic cell types are high (HPA: tissue IHC levels). It does not by itself prove cross-reactivity; endogenous detection activity can also mislead chromogenic interpretation (general IHC practice). |
| Diffuse color covers cells and spaces between them, obscuring nuclear borders. | A nuclear-rim call is unreliable when background masks the compartment pattern (HPA: tissue IHC profile). Review blocking, antibody concentration, washes and chromogen development, then compare a control without primary antibody for detection-related background (general IHC practice). |
| No signal appears in a tissue and cell type listed as High. | A negative result in that setting needs a technical check before biological interpretation (HPA: High in named cell types). Confirm that the expected cells are present and assess retrieval, antibody dilution and detection controls (general IHC practice). HPA reports no negative cell type here, so absence alone is not a reference pattern (HPA: tissue IHC record). |
| Cell-cycle location | During interphase, RANGAP1 is cytoplasmic and occurs at the nuclear envelope; during mitosis it associates with spindles and kinetochores, with little detection at spindle poles (UniProt P46060: subcellular location). Score a mitotic figure in context rather than requiring its pattern to match an interphase nuclear rim (general IHC practice). |
| Cell type and tissue | HPA reports distinct nuclear, nuclear-membrane and cytoplasmic expression across cells, with High levels in the listed glandular, neuronal and hematopoietic cells and Low levels in adipocytes (HPA: tissue IHC profile and levels). These are reference observations, not a guarantee that every section or cell stains equally. |
| IHC antibody evidence | The HPA tissue pattern has Supported reliability, described as consistency between staining and RNA expression (HPA: tissue IHC reliability). Two listed antibodies have Supported IHC status, HPA050110 and CAB004293; HPA062034 has no listed IHC status (HPA: antibody validation). Match interpretation to the antibody actually used. |
| SUMO-dependent targeting | Sumoylation targets RANGAP1 to nuclear pores and is required for its reported mitotic location (UniProt P46060: subcellular location). A weak rim in one preparation does not establish altered sumoylation: this stain alone does not measure the modification (general IHC interpretation). |
| Retrieval and epitope information | No antibody epitope or RANGAP1-specific fixation sensitivity is supplied (UniProt P46060 and HPA: supplied records). Antigen retrieval is a general paraffin-IHC variable; evaluate it with the chosen antibody's controls, without assigning a target-specific fixation effect (general IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| The positive-control section is blank. | The supplied records identify High-staining cells but do not establish the cause of a failed run (HPA: tissue IHC levels). | Check that the named cells are present, then review retrieval, antibody dilution, detection reagents and the run control (general IHC practice). Avoid calling the test section biologically negative until the control works. |
| Nuclear rim and cytoplasm are both faint. | Weak staining may prevent reliable compartment assessment; the expected pattern includes both locations (HPA: tissue IHC profile; UniProt P46060: interphase location). | Compare an HPA High cell type on the same run, review the counterstain and optimize the chosen IHC workflow using controls (HPA: tissue IHC levels; general IHC practice). |
| There is diffuse brown background or staining without primary antibody. | Detection-system background, including endogenous enzyme activity, can produce misleading chromogenic signal (general IHC practice). | Review the no-primary control, endogenous-activity blocking, reagent handling, washes and chromogen development (general IHC practice). Reassess localization only after nuclear borders are readable. |
| Cell surfaces stain more strongly than nuclei or cytoplasm. | A cell-surface outline conflicts with the supplied nuclear-envelope and cytoplasmic locations and the lack of a transmembrane segment (UniProt P46060: location; topology). | Check section morphology, controls and antibody specificity; require a plausible intracellular pattern in known-positive cells before scoring the outline as RANGAP1 (HPA: tissue IHC profile; general IHC practice). |
| Adipocytes dominate the signal in a mixed tissue. | Adipocytes are listed as Low, so a strong adipocyte-only pattern is discordant with the supplied tissue reference (HPA: Low in adipocytes). | Compare neighboring identifiable cells and an HPA High control; inspect no-primary staining for endogenous activity before considering cross-reactivity (HPA: tissue IHC levels; general IHC practice). |
| Q: Should IF/ICC show the same pattern as chromogenic tissue IHC? | IF/ICC images mainly localize RANGAP1 to the nuclear membrane, with additional vesicle, cytosol and flagellar-centriole locations (HPA: subcellular ICC-IF). | A: Use the nuclear membrane as the shared reference, while interpreting additional IF compartments against the IF/ICC evidence and its own guide (HPA: subcellular ICC-IF; tissue IHC profile). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Cerebellum | Purkinje cells | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Cervix | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: RANGAP1 is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Use the catalog antibody’s paraffin-section result as a starting point, then judge staining against RANGAP1’s expected compartments and tissue patterns.
A02771-2 has IHC data from human colorectal cancer paraffin sections and IF data from A431 cells (catalog image captions); the catalog lists human, mouse and rat reactivity (catalog: A02771-2).
A02771-2 has IHC data from human colorectal cancer paraffin sections and IF data from A431 cells (catalog image captions). M02771-1 lists IHC and ICC/IF applications and human, mouse and rat reactivity, but has no IHC or IF image caption in the payload (catalog: M02771-1).
Which to pick: Choose A02771-2 for paraffin-section IHC because its own caption documents staining human colorectal cancer tissue; the fixative is unreported (A02771-2 IHC image caption). For IF/ICC, A02771-2 has an A431 cell image, while M02771-1 is a rabbit monoclonal, clone 19R47, with ICC/IF listed but no image caption (A02771-2 IF image caption; catalog: M02771-1). Both list human, mouse and rat reactivity, but the supplied images document human samples only (catalog: A02771-2 and M02771-1; A02771-2 image captions).