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- Table of Contents
Plan chromogenic RB1 IHC in paraffin sections using a nuclear readout (HPA tissue IHC). Compare cell types with tissue controls, and start the catalog antibody at 2–5 μg/ml (HPA tissue IHC; datasheet A00039-3).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Predominantly nuclear in tissue (HPA tissue IHC) | |
| Staining pattern | Nuclear staining in most tissues, including retina (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A00039-3) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Adipose tissue+1 more · see all |
| Fixation | Keep fixation consistent across paraffin sections (standard IHC practice; not target-specific) | |
| Caveat | Some cell types have no detectable staining (HPA tissue IHC) | |
| Regulation | Phosphorylation may shift nuclear signal (UniProt) | |
| Isoform / epitope | 0 annotated isoforms; no extracellular segment (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A00039-3) is accompanied by four published RB1 IHC protocols (PMC10530403; PMC10253801; PMC3246124; PMC5992011).
| Sample | Paraffin-embedded human colorectal adenocarcinoma tissue; fixative not specified (datasheet A00039-3) |
| Fixation | Image fixative and duration unreported (datasheet A00039-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A00039-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A00039-3) |
| Primary antibody | Rabbit anti-RB1, 2-5 μg/ml recommended; image 1:100 (datasheet A00039-3) |
| Primary incubation | Overnight at 4 °C (datasheet A00039-3) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A00039-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | RB1-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Nuclear expression in most tissues, including retina. No signal in the no-primary control. |
RB1 should show predominantly nuclear staining across many tissues, including retina (HPA tissue IHC: nuclear expression in most tissues). Strong examples include retinal ganglion cells, cerebellar Purkinje cells and breast glandular cells (HPA tissue IHC: High). HPA rates the tissue pattern Supported, with medium consistency between antibody staining and RNA data (HPA tissue IHC). RB1 has no transmembrane segment, consistent with an intracellular pattern (UniProt P06400 topology).
| Distinct nuclear staining in retinal ganglion cells, with little surrounding background. | This matches a high expressing cell population and the predominant tissue compartment (HPA tissue IHC: High in retinal ganglion cells; nuclear expression in most tissues). Judge the stained cells within their tissue context: HPA also reports high staining in several other cell populations, while expression is lower or undetected in some populations (HPA tissue IHC). |
| Predominantly cytoplasmic staining with weak or absent nuclei. | Recheck specificity and detection because the expected tissue pattern is nuclear (HPA tissue IHC). Cytoplasmic RB1 remains biologically possible: UniProt lists cytoplasm and reports cytoplasmic localization when hyperphosphorylated, by similarity (UniProt P06400 subcellular location). A routine RB1 stain alone cannot establish phosphorylation state (general IHC interpretation practice). |
| Strong staining in adipocytes or hippocampal glial cells. | These populations are reported as Not detected (HPA tissue IHC). Unexpected signal warrants checks for antibody cross-reactivity, endogenous detection activity or pigment before assigning it to RB1 (general IHC interpretation practice). HPA's Supported rating and medium RNA–staining consistency make a single discordant cell population worth investigating, not proof that every stained cell is false positive (HPA tissue IHC). |
| Broad, diffuse color across cells and extracellular areas, without clear nuclear contrast. | This is less convincing than the predominantly nuclear pattern (HPA tissue IHC). Inspect a no-primary control and review blocking, washing and detection conditions for nonspecific or endogenous signal (general chromogenic IHC practice). Interpret the result against cell-specific morphology and a known positive region rather than scoring diffuse color as RB1 expression (general IHC interpretation practice). |
| No nuclear signal in retinal ganglion cells or another HPA high population. | An absent signal in a documented high population raises concern about assay performance (HPA tissue IHC: High in retinal ganglion cells, Purkinje cells and several other listed populations). Check a validated positive control, antibody dilution, retrieval, detection reagents and counterstain visibility (general IHC practice). An individual negative field does not, by itself, establish RB1 loss throughout a specimen (general IHC interpretation practice). |
| Cell population selected for the positive control | HPA reports High staining in retinal ganglion cells, Purkinje cells, melanocytes, decidual cells and several glandular populations; adipocytes and hippocampal glial cells are Not detected (HPA tissue IHC). Select and score the documented cell population, since a whole tissue label can obscure differences among its cells (general IHC interpretation practice). |
| Expected compartment and RB1 state | Nuclear expression predominates in tissue IHC (HPA tissue IHC). UniProt also lists cytoplasm and links hyperphosphorylation to cytoplasmic localization by similarity; acetylation by KAT2B/PCAF is required for nuclear localization during keratinocyte differentiation (UniProt P06400 subcellular location). These annotations support cautious review of cytoplasmic signal, without identifying its cause in a stained section. |
| Antibody validation | HPA lists IHC Supported for HPA050082 and CAB016687, while CAB000095 has no IHC status listed (HPA antibody validation). ICC Supported status for an antibody does not supply an IHC validation result (HPA antibody validation). Compare a new assay's distribution with the documented tissue pattern and its own controls (HPA tissue IHC; general IHC practice). |
| IF/ICC Q: Where should RB1 appear in cells? | A: Mainly in the nucleoplasm (HPA subcellular ICC-IF: supported). An additional primary cilium transition-zone location is marked uncertain (HPA subcellular ICC-IF). Treat that additional location as tentative; the tissue IHC call remains predominantly nuclear (HPA tissue IHC). IF/ICC images describe subcellular localization and do not define a paraffin-section staining condition (HPA subcellular ICC-IF; general IHC practice). |
| Target-specific preparation evidence | Target-specific fixation effects are not established by the supplied assay evidence. Verify with a matched IHC source before attributing a result to fixation. |
| Situation | Likely cause | Next action |
|---|---|---|
| Nuclei are blank in a known positive population. | The observed absence conflicts with a documented High cell population, but does not identify which assay step failed (HPA tissue IHC). | Run a documented positive population alongside the specimen; verify primary-antibody preparation, retrieval, chromogenic detection and counterstain readability (HPA tissue IHC; general IHC practice). Interpret a failed positive control as an unresolved assay result (general IHC practice). |
| All compartments stain, including areas without identifiable cells. | A diffuse pattern does not match predominantly nuclear tissue expression and may reflect nonspecific or endogenous signal (HPA tissue IHC; general IHC practice). | Examine a no-primary control, reduce background through appropriate blocking and washing, and review detection conditions (general chromogenic IHC practice). Reassess nuclear contrast only after the control distinguishes tissue signal from background. |
| Adipocytes or hippocampal glial cells appear strongly positive. | Those cell populations are Not detected in HPA tissue IHC; cross-reactivity or endogenous chromogenic activity is possible, but the image alone cannot identify the cause (HPA tissue IHC; general IHC practice). | Confirm cell identity, compare a no-primary control and check a documented high population in the same run (HPA tissue IHC; general IHC practice). If discordance persists, compare staining with an independently IHC-supported antibody (HPA antibody validation; general IHC practice). |
| Cytoplasmic color overwhelms the nuclei. | This departs from the usual nuclear tissue profile (HPA tissue IHC). UniProt's cytoplasmic assignment and hyperphosphorylation note, marked by similarity, leave a biological explanation possible (UniProt P06400 subcellular location). | Check nuclear counterstain, morphology and no-primary background; compare the distribution with a documented high population (HPA tissue IHC; general IHC practice). Do not label the cytoplasmic signal as hyperphosphorylated RB1 from this stain alone (general IHC interpretation practice). |
| Signal varies sharply between neighboring cell types. | Cell-specific variation may be expected: HPA reports High, Low and Not detected populations, with medium consistency between antibody staining and RNA data (HPA tissue IHC). | Score identifiable cell types separately and record compartment and intensity for each (general IHC interpretation practice). Use HPA's cell-level observations as reference points, then check controls before calling an unexpected population positive or negative (HPA tissue IHC; general IHC practice). |
| A proposed ciliary focus appears in an IF/ICC image. | HPA marks the primary cilium transition-zone location uncertain, while its supported main IF/ICC location is nucleoplasm (HPA subcellular ICC-IF). | Treat the focus as tentative and assess whether the nucleoplasmic pattern is present (HPA subcellular ICC-IF). Keep its interpretation separate from paraffin-section chromogenic scoring, whose expected tissue pattern is predominantly nuclear (HPA tissue IHC; general IHC interpretation practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Cerebellum | Purkinje cells | High | Protein (IHC) | HPA → |
| Cervix | Glandular cells | High | Protein (IHC) | HPA → |
| Lymph node | Non-germinal center cells | High | Protein (IHC) | HPA → |
Troubleshoot RB1 staining in paraffin sections by checking retrieval, nuclear localisation, controls, and scoring before interpreting loss or redistribution.
Catalog anti-RB1 antibodies have IHC images from human and rat paraffin sections and IF images from SIHA and SH-SY5Y cells (catalog IHC and IF image captions).
A00039-3 shows IHC in human colorectal adenocarcinoma paraffin sections and IF in SIHA cells; P00039-1 shows IHC in human colorectal adenocarcinoma paraffin sections (respective image captions). M00039-2 shows IHC in rat lung paraffin sections and IF in SH-SY5Y cells (M00039-2 image captions).
Which to pick: For tissue IHC, start with A00039-3, which has a human paraffin-section image and a listed dilution of 2–5 μg/ml (A00039-3 IHC image caption; catalog dilution); P00039-1 also has a human paraffin-section image, but its caption does not establish S807 specificity (P00039-1 title and IHC image caption). For IF/ICC, A00039-3 has a SIHA-cell IF image, while monoclonal M00039-2 has a SH-SY5Y-cell IF image (respective IF image captions; M00039-2 catalog clone). For cross-species selection, A00039-3 lists human, mouse, and rat reactivity; M00039-2 lists human and mouse despite its rat-lung IHC caption, and the paraffin-section captions do not report a fixative (catalog reactivity; respective IHC image captions).