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- Table of Contents
Plan paraffin-section S100A7 IHC with consistent fixation, antigen retrieval, and chromogenic detection. Use the squamous epithelial staining profile to select comparison tissue and interpret the result (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic or secreted (UniProt) | |
| Staining pattern | Squamous epithelia stain; subcellular pattern unreported (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A02369-1) | |
| Positive control | Skin+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Secretion can separate protein staining from RNA patterns (HPA tissue IHC) | |
| Regulation | Up-regulated in psoriatic epidermis (UniProt) | |
| Isoform / epitope | No isoforms or transmembrane segment; no sided epitope map (UniProt) |
The catalog antibody uses citrate pH 6 retrieval (datasheet A02369-1). The published S100A7 IHC protocols below cover tissue staining in three articles (PMC11732109; PMC12031700; PMC2914786).
| Sample | Paraffin-embedded human lung cancer tissue; fixative not specified (datasheet A02369-1) |
| Fixation | Image fixative and duration unreported (datasheet A02369-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A02369-1) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02369-1) |
| Primary antibody | Rabbit anti-S100A7, 0.5-1μg/ml (datasheet A02369-1) |
| Primary incubation | Overnight at 4 °C (datasheet A02369-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A02369-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | S100A7-positive staining in cells in corneal layer of skin (HPA tissue IHC: High). HPA tissue profile: Expression in squamous epithelia. No signal in the no-primary control. |
In paraffin-section IHC, expect S100A7 mainly in squamous epithelia, with high staining in skin corneal-layer cells and medium staining in several other squamous epithelia (HPA tissue IHC). Cytoplasmic staining fits its annotation; a secreted pool may complicate tissue localisation (UniProt P31151). S100A7 has no transmembrane segment (UniProt P31151 topology). HPA rates tissue staining “Enhanced” but notes medium consistency with RNA and antibodies that can target proteins from multiple genes (HPA tissue IHC).
| Strong signal marks skin corneal-layer cells; squamous epithelial cells stain in cervix, esophagus, oral mucosa, tonsil or vagina (HPA tissue IHC). | This matches the reported distribution: skin is high, while those squamous sites are medium (HPA tissue IHC). Judge staining within the named cell population; a whole-section intensity score can obscure where the signal arose (general IHC practice). |
| Signal appears predominantly nuclear, membranous or confined to cell borders instead of cytoplasmic (UniProt P31151; HPA subcellular ICC-IF). | That compartment is discordant with cytoplasm in UniProt and supported cytosol in HPA ICC-IF (UniProt P31151; HPA subcellular ICC-IF). Review morphology and controls before assigning it to S100A7; the secreted annotation permits cautious interpretation of extracellular signal, but does not establish a membrane pattern (UniProt P31151). |
| The strongest stain is in an unexpected cell population, while the expected squamous cells are weak or unstained (HPA tissue IHC). | Consider cross-reactivity, endogenous detection activity or misidentified cells (general IHC practice). HPA warns that its tissue assessment involves antibodies targeting proteins from more than one gene, so location alone cannot establish molecular specificity (HPA tissue IHC). |
| A uniform haze covers tissue and empty spaces, obscuring cell boundaries (general IHC practice). | Treat diffuse background as an assay interpretation problem, not a tissue-expression result (general IHC practice). Check the detection-only control and staining distribution before comparing intensity with HPA's cell-specific observations (general IHC practice; HPA tissue IHC). |
| Skin corneal-layer cells show no convincing signal in an otherwise interpretable section (HPA tissue IHC). | This conflicts with HPA's high observation, but a single negative slide cannot distinguish assay failure from specimen variation (HPA tissue IHC; general IHC practice). Check tissue preservation and controls, then assess the catalog antibody's stated IHC-P conditions (general IHC practice). |
| Tissue and cell population | HPA reports high staining in skin corneal-layer cells and medium staining in several squamous epithelia; adipocytes in adipose tissue are “not detected” (HPA tissue IHC). Use the specified cells when interpreting controls, rather than treating every cell in a named tissue alike (general IHC practice). |
| Intracellular and secreted pools | UniProt annotates cytoplasm and non-classical secretion; HPA ICC-IF supports cytosol (UniProt P31151; HPA subcellular ICC-IF). Extracellular signal therefore needs context, and its presence alone does not identify the stained cell of origin (UniProt P31151; general IHC practice). |
| Antibody specificity and validation | HPA lists IHC as Supported for HPA006997 and Enhanced for CAB001453 and CAB033766; its tissue summary cautions that antibodies can target proteins from multiple genes (HPA antibodies; HPA tissue IHC). Match the chosen antibody's own validation to the observed pattern (general IHC practice). |
| Protein processing and epitope information | UniProt lists a 2–101 chain, no signal peptide or propeptide, and no glycosylation sites (UniProt P31151). The supplied record gives no antibody epitope position, so it cannot predict which pool an antibody detects (UniProt P31151; supplied evidence). |
| Antigen retrieval | Target-specific fixation effects are not established by the supplied assay evidence. Verify with a matched IHC source before attributing a result to fixation. |
| Situation | Likely cause | Next action |
|---|---|---|
| No staining in skin corneal-layer cells, the reported high population (HPA tissue IHC). | The assay or specimen may be uninformative; the absence alone does not identify a cause (general IHC practice). | Verify morphology, positive and detection controls, then check the catalog antibody's IHC-P instructions and any recorded retrieval or dilution deviation (general IHC practice). |
| Only nuclei or cell borders stain (general IHC practice). | That pattern disagrees with UniProt cytoplasm and HPA's supported ICC-IF cytosol localisation (UniProt P31151; HPA subcellular ICC-IF). | Inspect a positive control and compare the pattern with a separately validated antibody if available; avoid scoring the discordant compartment as confirmed S100A7 (general IHC practice; HPA antibodies). |
| Unexpected cells stain more strongly than the listed squamous epithelial populations (HPA tissue IHC). | Cross-reactivity or endogenous detection activity is possible (general IHC practice); HPA flags multi-gene antibody targeting (HPA tissue IHC). | Identify the cells by morphology, review the detection-only control, and compare antibody validation and the HPA cell-specific pattern (general IHC practice; HPA antibodies; HPA tissue IHC). |
| Diffuse stain prevents cell-level scoring (general IHC practice). | Background from detection or inadequate assay blocking is possible (general IHC practice). | Inspect the detection-only control, then review blocking, washing and detection settings before interpreting tissue intensity (general IHC practice). |
| Two antibodies give different staining maps (general IHC practice). | Their validation status differs, and HPA cautions that some antibodies target proteins from multiple genes (HPA antibodies; HPA tissue IHC). | Record each antibody's identity and validation, compare cell populations against HPA tissue IHC, and report unresolved discordance rather than combining scores (HPA antibodies; HPA tissue IHC; general IHC practice). |
| IF/ICC question: is predominantly cytosolic fluorescence expected? | Yes; HPA reports supported cytosol localisation in ICC-IF, while UniProt annotates cytoplasm and secretion (HPA subcellular ICC-IF; UniProt P31151). | Interpret fluorescence against cell boundaries and controls; HPA cautions that its subcellular result uses antibodies targeting proteins from multiple genes (general IF practice; HPA subcellular ICC-IF). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Caution, targets protein from more than one gene. At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Skin | Cells in corneal layer | High | Protein (IHC) | HPA → |
| Cervix | Squamous epithelial cells | Medium | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | Medium | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Medium | Protein (IHC) | HPA → |
| Nasopharynx | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Use the catalog antibody’s paraffin-section workflow as a starting point, then assess S100A7 staining against its reported tissue and cellular distribution.
A02369-1 has IHC images from paraffin sections of human lung and rectal cancer tissue and IF data from A431 cells (catalog image captions). Listed reactivity covers human, mouse and rat (catalog reactivity).
A02369-1 is listed for IHC and shown on paraffin sections of human lung and rectal cancer tissue (catalog applications; catalog IHC captions). A02369-1 is also listed for IF/ICC and shown in A431 cells by IF (catalog applications; catalog IF caption).
Which to pick: Choose A02369-1 for chromogenic IHC on paraffin sections: its IHC captions describe citrate pH 6 retrieval and DAB detection; the fixative is unreported (catalog IHC captions). For IF/ICC, the same SKU lists both applications and has an A431 IF image (catalog applications; catalog IF caption). For mouse or rat samples, A02369-1 lists reactivity with both species, but the supplied IHC images show human tissue; clonality is unreported (catalog reactivity; catalog IHC captions; catalog clone field).