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- Table of Contents
Plan chromogenic SAV1 IHC in paraffin sections with the catalog antibody at 2–5 μg/mL (datasheet A04183-2). Use the reported cytoplasmic tissue pattern and its low consistency with RNA expression to guide interpretation (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasm in tissue (HPA tissue IHC); nucleus annotated (UniProt) | |
| Staining pattern | Cytoplasmic staining in most tissues; glandular cells positive (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A04183-2) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A04183-2) | |
| Caveat | Antibody staining has low consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Higher expression in fetal than adult heart (UniProt) | |
| Isoform / epitope | No listed isoforms; full-length chain 1–383 (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet A04183-2) with three published SAV1 tissue protocols (PMC10742029; PMC4978403; PMC11083677).
| Sample | Paraffin-embedded human lung cancer tissue; fixative not specified (datasheet A04183-2) |
| Fixation | Image fixative and duration unreported (datasheet A04183-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A04183-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A04183-2) |
| Primary antibody | Rabbit anti-SAV1, 2-5 μg/ml (datasheet A04183-2) |
| Primary incubation | Overnight at 4 °C (datasheet A04183-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A04183-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | SAV1-positive staining in glandular cells of adrenal gland (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic expression in most tissues. No signal in the no-primary control. |
SAV1 is primarily cytoplasmic in tissue IHC (HPA: cytoplasmic expression in most tissues); UniProt also lists nuclear localization (UniProt Q9H4B6: nucleus, cytoplasm). Expect staining in glandular cells of colon, breast and other listed positive tissues, and in bronchial respiratory epithelial cells (HPA: medium staining). SAV1 has no transmembrane segment (UniProt Q9H4B6: topology). Interpret tissue results cautiously: HPA rates the IHC antibody Approved but reports low consistency between staining and RNA expression (HPA: reliability description).
| Cytoplasmic staining in colon glandular cells or bronchial respiratory epithelial cells. | This fits the reported compartment and cell types (HPA: cytoplasmic expression in most tissues; medium in these cells). Compare staining within the specified cells, since a positive tissue can contain cells with different staining patterns (general IHC practice). |
| Predominantly nuclear staining, with little cytoplasmic signal. | Review cautiously: UniProt lists the nucleus as a possible SAV1 location, while HPA reports cytoplasmic tissue staining and supported cytosolic ICC-IF localization (UniProt Q9H4B6: subcellular location; HPA: tissue IHC, ICC-IF). A nuclear-only result does not match HPA's principal observed pattern; check controls and detection artefacts before assigning it to SAV1 (general IHC practice). |
| Strong staining confined to adipocytes or esophageal squamous epithelial cells. | These cell types were not detected in the supplied tissue IHC record (HPA: adipose tissue, esophagus). Check for cross-reactivity or endogenous detection activity with suitable controls (general IHC practice). An unexpected stain alone cannot establish which explanation applies. |
| Diffuse color across several compartments, including cell-free areas. | This does not provide a clear cellular localization; HPA describes cytoplasmic expression in most tissues (HPA: tissue IHC profile). Review background in the no-primary control, blocking, washes and chromogen development before scoring cells as positive (general IHC practice). |
| No visible signal in colon glandular cells despite preserved tissue morphology. | Colon glandular cells are reported at medium staining (HPA: colon), so inspect the IHC workflow and a concurrent positive control (general IHC practice). The HPA antibody is Approved, but staining has low consistency with RNA expression; absence in one section is not proof that SAV1 is absent (HPA: reliability description). |
| Compartment used for scoring | Prioritize interpretable cytoplasmic staining in tissue IHC (HPA: tissue IHC profile). UniProt also lists the nucleus, so record a nuclear component separately and assess its controls (UniProt Q9H4B6: subcellular location; general IHC practice). |
| Choice of comparison cells | Colon glandular and bronchial respiratory epithelial cells are medium-staining examples; adipocytes and esophageal squamous epithelial cells are reported as not detected (HPA: tissue IHC). Use the named cell types when comparing sections. |
| Strength of validation evidence | The listed antibody, HPA001808, has Approved IHC status, alongside a warning of low consistency between staining and RNA expression (HPA: antibody status, tissue reliability). Treat discordant staining as a finding to verify. |
| Intracellular protein features | SAV1 has no transmembrane segment or signal peptide and is annotated in the cytoplasm and nucleus (UniProt Q9H4B6: topology, processing, subcellular location). The supplied sources do not establish a SAV1-specific antigen retrieval or fixation response. |
| IF/ICC: what localization should I expect? | HPA reports supported cytosolic localization in ICC-IF, with images from A-431, SiHa and U2OS (HPA: subcellular). Interpret IF localization against that observation; this tissue IHC section supplies no IF protocol. |
| Situation | Likely cause | Next action |
|---|---|---|
| Cytoplasmic stain is faint in a selected positive cell type. | The observed level may vary by cell type; some listed cells stain low rather than medium (HPA: tissue IHC). Weak detection can also arise during a general IHC workflow. | Confirm the exact HPA cell type and its reported level, then review the concurrent positive control, retrieval and detection steps (HPA: tissue IHC; general IHC practice). No SAV1-specific retrieval condition is established here. |
| Nuclei dominate the staining. | A nuclear location is annotated, but HPA's tissue profile is cytoplasmic and its ICC-IF localization is cytosolic (UniProt Q9H4B6: subcellular location; HPA: tissue IHC, ICC-IF). | Score nuclear and cytoplasmic compartments separately; compare no-primary and positive controls before interpreting nuclear-only staining (general IHC practice). |
| Color appears in an HPA-undetected cell type. | Possible cross-reactivity or endogenous detection activity (general IHC practice); HPA reports adipocytes and esophageal squamous epithelial cells as not detected (HPA: tissue IHC). | Check a no-primary control and the detection system, then compare staining with a named HPA-positive cell type on a suitable section (general IHC practice; HPA: tissue IHC). |
| The entire section has diffuse background. | Nonspecific reagent binding, inadequate washing or excess chromogen development can obscure cellular staining (general IHC practice). | Inspect the no-primary control, optimize blocking and washes, and shorten detection development if background persists (general IHC practice). Reassess whether cytoplasmic cells remain distinguishable (HPA: tissue IHC profile). |
| A positive comparison section shows no signal. | A failed staining run is possible, while HPA also cautions that staining has low consistency with RNA expression (general IHC practice; HPA: reliability description). | Verify control performance and review the IHC workflow before calling SAV1 absent; record the cell type and section examined (general IHC practice). |
| Tissue IHC and ICC-IF seem to disagree. | HPA describes cytoplasmic staining in most tissues and supported cytosolic localization in ICC-IF (HPA: tissue IHC, subcellular). Differences in the cells examined may complicate comparison. | Compare compartment calls in the specific cells tested and document controls for each assay (general IHC practice); do not infer an IF staining procedure from the tissue IHC pattern. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Colon | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Liver | Cholangiocytes | Not detected | Protein (IHC) | HPA → |
| Oral mucosa | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot SAV1 staining in paraffin sections by checking retrieval, compartment, cell type, and controls before comparing chromogenic signal across samples.
A04183-2 has IHC data from human paraffin sections of lung cancer, liver cancer and spleen (catalog IHC image captions). No IF images are provided (catalog: IF image list empty).
A04183-2 is listed for human IHC (catalog: applications and reactivity). Its IHC images show staining in paraffin sections of human lung cancer, liver cancer and spleen (catalog IHC image captions).
Which to pick: Choose A04183-2 for human paraffin-section IHC; its captions document EDTA retrieval at pH 8.0 and staining at 2 μg/ml, but do not report the fixative (catalog IHC image captions). IF/ICC is not listed as a validated application for A04183-2, so there is no supported IF/ICC choice here (catalog: applications and IF image list). Cross-species use is likewise unsupported by this catalog entry, which lists human reactivity only (catalog: reactivity).