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- Table of Contents
Plan chromogenic SDHB IHC in paraffin sections using the granular cytoplasmic tissue pattern (HPA tissue IHC). This guide covers fixation consistency, controls and interpretation alongside SDHB’s mitochondrial inner membrane location (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Granular cytoplasm (HPA tissue IHC); mitochondrial inner membrane (UniProt) | |
| Staining pattern | Granular cytoplasmic staining across cell types (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet M01090-1) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Adipocytes and chondrocytes show low staining (HPA tissue IHC) | |
| Regulation | Expression regulation is not annotated (UniProt) | |
| Isoform / epitope | No isoforms annotated; mature chain spans 29–280 (UniProt) |
The catalog antibody uses citrate pH 6 retrieval (datasheet M01090-1). The published options cover FFPE pheochromocytoma and paraganglioma (PMC4718191; PMC8418866).
| Sample | Paraffin-embedded human lung cancer tissues; fixative not specified (datasheet M01090-1) |
| Fixation | Image fixative and duration unreported (datasheet M01090-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet M01090-1) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M01090-1) |
| Primary antibody | Mouse monoclonal (clone 2I3) anti-SDHB, 0.5-1μg/ml (datasheet M01090-1) |
| Primary incubation | Overnight at 4 °C (datasheet M01090-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet M01090-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | SDHB-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Granular cytoplasmic expression in all cell types. No signal in the no-primary control. |
SDHB is a mitochondrial complex II subunit associated with the inner membrane and has no transmembrane segment (UniProt P21912: location and topology). In paraffin-section IHC, expect granular cytoplasmic staining across cell types, with high staining reported in several glandular, respiratory epithelial and neural cell populations (HPA tissue IHC: granular expression; High examples). HPA rates the tissue staining profile Enhanced, citing consistency between antibody staining and RNA expression (HPA tissue IHC: reliability).
| Granular cytoplasmic staining in colon glandular cells, with other cells also staining. | This fits the expected mitochondrial pattern: HPA reports granular cytoplasmic expression across cell types and High staining in colon glandular cells (HPA tissue IHC: profile; Colon, High). Compare intensity within the same staining run; a dark chromogen deposit alone does not establish specific localisation (general IHC practice). |
| Predominantly nuclear or cell-surface staining replaces the granular cytoplasmic pattern. | Treat this as discordant with the expected paraffin-section IHC pattern (HPA tissue IHC: granular cytoplasmic expression; UniProt P21912: inner-membrane location). HPA reports additional nucleoplasmic and plasma-membrane signals in ICC-IF as uncertain, so those IF observations do not establish a primary IHC pattern (HPA subcellular: additional locations uncertain). |
| The strongest signal is confined to adipocytes or chondrocytes. | Reassess specificity before scoring this as SDHB enrichment: HPA records Low staining in adipocytes and chondrocytes, while describing granular expression across cell types (HPA tissue IHC: Low examples; profile). Unexpected cell-restricted signal can reflect cross-reactivity or detection activity; check its distribution against control sections (general IHC practice). |
| Uniform colour obscures cell boundaries and mitochondrial granularity. | This is background until a cell-associated pattern can be distinguished (general IHC practice). HPA's reported SDHB profile is granular cytoplasmic staining (HPA tissue IHC: profile); diffuse colour cannot by itself identify SDHB-positive cells or support an intensity score. |
| No cellular staining appears in a section expected to be positive. | An unstained reported-positive population, such as bronchial respiratory epithelial cells, makes the run difficult to interpret (HPA tissue IHC: Bronchus, High). Check the control and detection workflow before calling a test section negative; HPA staining levels do not establish a fixation-specific explanation (general IHC practice; HPA tissue IHC: scope). |
| Cell type and tissue | HPA reports granular cytoplasmic expression across cell types, High staining in listed populations, and Low staining in adipocytes and chondrocytes (HPA tissue IHC: profile; positive and Low lists). Use those observations as comparisons, without treating Low as absent or assuming equal intensity in every cell. |
| Antibody validation | The overall tissue profile is Enhanced for consistency with RNA expression (HPA tissue IHC: reliability). Individual IHC labels vary: HPA002868, CAB009822 and CAB068235 are Enhanced; CAB068233 and CAB068234 are Supported (HPA antibodies: IHC labels). A label supports confidence in the reported pattern, not every stain in a new run. |
| Topology and processing | SDHB is associated with the mitochondrial inner membrane but has no transmembrane segment; the annotated mature chain spans residues 29–280 (UniProt P21912: topology; processing). These facts support mitochondrial interpretation, but give no paraffin-section epitope position or antigen-retrieval setting. |
| Antigen retrieval | Target-specific fixation effects are not established by the supplied assay evidence. Verify with a matched IHC source before attributing a result to fixation. |
| IF/ICC Q&A: where should fluorescence appear? | Mainly in mitochondria; HPA marks that location Supported and additional nucleoplasm and plasma-membrane locations Uncertain (HPA subcellular: locations). HPA002868 has an ICC Supported label (HPA antibodies: ICC). Interpret an IF image on its own terms; this section supplies no IF protocol option. |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in a reported-High control population. | The run may have a reagent, retrieval or detection problem; the tissue observation alone identifies no SDHB-specific failure mechanism (HPA tissue IHC: High examples; general IHC practice). | Verify the control section, antibody and detection steps together, then compare retrieval conditions if needed (general IHC practice). Keep a reported-High population, such as colon glandular cells, in the comparison (HPA tissue IHC: Colon, High). |
| Signal is weak but its granules are visible. | Weak intensity can complicate scoring; HPA reports different staining levels among cell populations (HPA tissue IHC: High and Low lists). It does not supply an SDHB-specific fixation effect. | Compare the same cell population and controls across staining runs before changing the score; document any retrieval or antibody-condition change (general IHC practice). Preserve granular localisation as an interpretation criterion (HPA tissue IHC: profile). |
| Predominant nuclear or membrane-edge colour appears. | This conflicts with the expected IHC profile; the extra nucleoplasmic and plasma-membrane ICC-IF locations are explicitly uncertain (HPA tissue IHC: profile; HPA subcellular: additional locations). | Inspect control sections and detection background, then reassess whether granular cytoplasmic staining remains identifiable (general IHC practice; HPA tissue IHC: profile). Do not use uncertain IF localisation to validate a dominant chromogenic IHC pattern. |
| Adipocytes or chondrocytes appear stronger than reported-High cells. | HPA lists those populations as Low; disproportionate staining merits a specificity check, though Low does not mean absent (HPA tissue IHC: Low examples; positive list). | Compare them with reported-High cells on adequately controlled sections, and check whether the signal is granular and cell-associated (HPA tissue IHC: profile; general IHC practice). Avoid interpreting intensity alone as proof of SDHB expression. |
| Diffuse chromogen covers cells and surrounding tissue. | Non-specific reagent binding or incomplete washing can obscure cell-associated staining (general IHC practice). The expected HPA pattern is granular cytoplasmic expression (HPA tissue IHC: profile). | Review blocking, washing and detection conditions using appropriate control sections (general IHC practice). Score only where the cellular pattern is distinguishable; do not convert diffuse colour into a positive SDHB call. |
| Colour persists where primary-antibody signal should be absent. | Endogenous detection activity can produce chromogenic colour independent of antibody binding, depending on the detection chemistry (general IHC practice). | Use a suitable primary-omission control and address endogenous activity for the detection system used (general IHC practice). Compare the residual colour with the granular cellular profile before interpreting SDHB staining (HPA tissue IHC: profile). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Caudate | Neuronal cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: SDHB is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot SDHB staining in paraffin sections by checking retrieval, mitochondrial localisation and internal controls before interpreting chromogenic signal.
Real SDHB IHC images cover human lung, intestinal and liver cancer tissue and rat kidney (catalog IHC captions). IF is listed for M01090-5 (catalog applications).
M01090-1 was imaged on paraffin-embedded human lung cancer tissue, and M01090-2 on paraffin-embedded human intestinal cancer tissue (respective IHC captions). PA1718 was imaged on paraffin-embedded human liver cancer tissue, while M01090-5 has a rat kidney IHC image (respective IHC captions).
Which to pick: For paraffin-section tissue IHC, choose mouse clone 2I3, M01090-1: its image used citrate retrieval at pH 6 for 20 minutes; the fixative was unreported (catalog clone; M01090-1 IHC caption). For IF/ICC, choose M01090-5, which lists IF at 1:200–1:1000, though its supplied image documents IHC rather than IF (catalog applications and dilution; M01090-5 IHC caption). For cross-species tissue IHC, consider mouse clone 11I3, M01090-2, with paraffin-section images from human intestinal cancer and mouse and rat cardiac muscle (catalog clone; M01090-2 IHC captions).