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- Table of Contents
Plan chromogenic IHC for SLC16A1 in paraffin sections using its cytoplasmic and membranous tissue pattern (HPA tissue IHC). Use high-staining colon glandular cells as a positive reference and assess membrane staining in light of BSG/EMB-dependent surface expression (HPA tissue IHC; UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and membranous staining in most tissues (HPA tissue IHC) | |
| Staining pattern | Colon glandular cells: high cytoplasmic and membranous staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A02240-1) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A02240-1) | |
| Caveat | Staining has medium consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Surface display depends on BSG/EMB (UniProt) | |
| Isoform / epitope | 2 isoforms; check epitope location and membrane side (UniProt) |
The catalog antibody uses EDTA pH 8.0 retrieval (datasheet A02240-1). The published IHC methods below cover pancreatic cancer, colon and liver biopsies, and mucosal sections (PMC11094506; PMC11237055; PMC12740759).
| Sample | Paraffin-embedded mouse kidney tissue; fixative not specified (datasheet A02240-1) |
| Fixation | Image fixative and duration unreported (datasheet A02240-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A02240-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02240-1) |
| Primary antibody | Rabbit anti-SLC16A1, 1:50 recommended; image 1:100 (datasheet A02240-1) |
| Primary incubation | Overnight at 4 °C (datasheet A02240-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A02240-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | SLC16A1-positive staining in glandular cells of appendix (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic and membranous expression in most tissues. No signal in the no-primary control. |
SLC16A1 (MCT1) is a 12-pass membrane transporter expected at the cell surface, including apical or basolateral membranes (UniProt P53985 topology and subcellular location). On paraffin IHC, expect membranous and cytoplasmic staining in many tissues, with strong staining in specified glandular cells and testicular Sertoli cells (HPA tissue IHC). HPA rates tissue staining reliability “Enhanced,” while noting medium consistency with RNA expression (HPA tissue IHC).
| Distinct membrane staining in colon or duodenal glandular cells, possibly with cytoplasmic signal. | This fits a positive tissue pattern: HPA reports High staining in those cells and describes expression as cytoplasmic and membranous across most tissues (HPA tissue IHC). Record the membrane component and the stained cell population separately; cytoplasmic signal alone does not establish cell-surface localisation (UniProt P53985 subcellular location). |
| Strong nuclear-only staining, with no convincing membrane outline. | Nuclear-only signal conflicts with the documented membrane localisation and HPA’s cytoplasmic and membranous tissue profile (UniProt P53985 subcellular location; HPA tissue IHC). Treat it as a suspected artefact and review controls and morphology before assigning it to SLC16A1. Cytoplasmic staining by itself is not automatically erroneous (HPA tissue IHC). |
| Prominent staining in adipocytes or pancreatic exocrine glandular cells. | HPA lists those particular cell populations as Not detected, so a strong result there warrants scrutiny for cross-reactivity or endogenous chromogenic activity (HPA tissue IHC; general IHC practice). This comparison applies to the named cells, not every cell in adipose tissue or pancreas; check tissue anatomy and controls before calling it nonspecific. |
| Uniform colour over tissue, extracellular spaces, or the whole slide, without cell boundaries. | A diffuse deposit that does not follow the documented cellular pattern is less convincing than defined glandular or membrane-associated staining (HPA tissue IHC; UniProt P53985 subcellular location). In chromogenic IHC, assess secondary-reagent background, residual endogenous detection activity, and wash quality with appropriate controls (general IHC practice). |
| No staining in colon glandular cells or testicular Sertoli cells. | Absence of signal in a well-preserved positive-control population is a run-level warning: HPA reports High staining in both populations (HPA tissue IHC). First verify that the expected cells are present; then review antibody suitability, detection reagents, and the control slide before interpreting a study specimen as negative (general IHC practice). |
| Membrane topology and trafficking | SLC16A1 has 12 transmembrane segments, and cell-surface expression requires BSG or EMB association (UniProt P53985 topology and subunit data). Interpret the visible compartment as an observation; staining intensity alone cannot show whether transporter reached the surface. |
| Cell population chosen for comparison | HPA reports High staining in appendix, colon, duodenum, endometrium, epididymis, prostate, and stomach glandular cells, plus testicular Sertoli cells (HPA tissue IHC). Its negative calls name specific populations, including adipocytes and pancreatic exocrine glandular cells (HPA tissue IHC). |
| Strength of the reference pattern | HPA assigns tissue IHC reliability “Enhanced” but describes only medium consistency between antibody staining and RNA expression (HPA tissue IHC). Use the listed cell-level patterns as references, while checking morphology and assay controls when a specimen differs. |
| Antibody validation | HPA003324 has “Enhanced” IHC validation; CAB079035 has “Supported” IHC validation (HPA antibodies). These grades describe the listed antibodies, not every catalog antibody. HPA071055 and CAB017489 have no IHC grade in the supplied record (HPA antibodies). |
| IF/ICC: where should fluorescence appear? | Mainly at the plasma membrane and cell junctions; HPA marks both locations “enhanced” in ICC-IF (HPA subcellular). This is an IF/ICC localisation reference, not an additional paraffin IHC protocol or a promise that every tissue cell will show junctional staining. |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive-control glandular cells show no chromogenic signal. | The expected population may be absent from the section, or an assay step may have failed; HPA reports High staining in colon glandular cells (HPA tissue IHC). | Confirm cell identity and section integrity, then inspect the IHC-validated antibody, retrieval conditions, detection reagents, and a known-positive control together (general IHC practice). No SLC16A1-specific retrieval condition is established here. |
| Staining is nuclear-only. | The compartment conflicts with the documented membrane location and tissue pattern (UniProt P53985 subcellular location; HPA tissue IHC). | Compare with a positive-control section and a no-primary control; assess whether colour follows nuclei or tissue pigment before accepting the signal (general IHC practice). |
| Adipocytes or pancreatic exocrine cells stain strongly. | Those exact populations are listed as Not detected by HPA; cross-reactivity or endogenous activity may explain the discrepancy (HPA tissue IHC; general IHC practice). | Recheck cell identity, examine the no-primary control, and compare staining with a documented positive population on a matched run (general IHC practice). |
| Diffuse background obscures gland boundaries. | Background deposition or insufficient blocking or washing can obscure cellular localisation in chromogenic IHC (general IHC practice). | Inspect no-primary and detection-only controls, review blocking and washes, and score only signal that resolves to identifiable cells (general IHC practice). |
| Cytoplasmic staining is present but membrane outlines are weak. | HPA describes both cytoplasmic and membranous tissue expression; weak outlines therefore do not, by themselves, prove a false result (HPA tissue IHC). | Document cytoplasmic and membrane components separately and compare the cell population with HPA’s tissue-level reference; avoid claiming confirmed surface localisation from diffuse cytoplasm (HPA tissue IHC; UniProt P53985 subcellular location). |
| A purported negative-control section has scattered stained cells. | HPA’s “Not detected” entries refer to named cell types, and SLC16A1 is widely expressed across tissues (HPA tissue IHC; UniProt P53985 tissue specificity). | Identify the stained cells before judging the control; compare the same cell type with its HPA entry, and use a no-primary control to assess assay background (HPA tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Endometrium | Glandular cells | High | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Cervix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot SLC16A1 staining by checking retrieval, membrane localisation, controls and scoring in paraffin-section chromogenic IHC (datasheet A02240-1; UniProt P53985).
Two anti-SLC16A1 antibodies have paraffin-section IHC images: A02240-1 in mouse and rat kidney, and M02240 in human breast and cervical cancer tissue (catalog IHC image captions).
A02240-1 lists IHC reactivity with human, mouse and rat, with paraffin-section IHC images from mouse and rat kidney (catalog applications, reactivity and IHC image captions). M02240 lists human IHC reactivity, with paraffin-section IHC images from human breast and cervical cancer tissue (catalog applications, reactivity and IHC image captions).
Which to pick: For human tissue IHC, choose monoclonal M02240 if its human paraffin-section examples match your needs; its image captions do not report a fixative (catalog clone and IHC image captions). For cross-species IHC, choose polyclonal A02240-1, which lists human, mouse and rat reactivity and has mouse and rat paraffin-section images; its image captions also do not report a fixative (catalog dilution_raw, reactivity and IHC image captions). Neither SKU lists IF/ICC validation, so there is no evidence-based IF/ICC pick here (catalog applications and IF image alts).