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- Table of Contents
Plan paraffin-section IHC for SLC34A2 using lung type II pneumocytes and genital tract ciliated cells as staining references (HPA tissue IHC). The guide covers fixation consistency, staining interpretation and controls for the IHC-validated antibody.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Membranous in lung type II pneumocytes and female genital tract (HPA tissue IHC) | |
| Staining pattern | Membranous type II pneumocytes and genital tract ciliated cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A03957-1) | |
| Positive control | Bronchus+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Ciliary staining may complicate membrane-only scoring (HPA tissue IHC) | |
| Regulation | Lung-enriched RNA expression; no regulator specified (HPA tissue RNA) | |
| Isoform / epitope | 2 isoforms; epitope differences unreported; topology matters (UniProt) |
The catalog antibody’s IHC-P protocol uses EDTA retrieval (datasheet: pH 8.0); the four published protocols below provide additional SLC34A2 IHC conditions (PMC8298178; PMC11168907; PMC11083581; PMC9246846).
| Sample | Paraffin-embedded human lung cancer tissue; fixative not specified (datasheet A03957-1) |
| Fixation | Image fixative and duration unreported (datasheet A03957-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A03957-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03957-1) |
| Primary antibody | Rabbit anti-SLC34A2, 2-5μg/ml (datasheet A03957-1) |
| Primary incubation | Overnight at 4 °C (datasheet A03957-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A03957-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | SLC34A2-positive staining in ciliated cells (ciliary rootlets) of bronchus (HPA tissue IHC: High). HPA tissue profile: Membranous expression in lung type II pneumocytes and female genital tract. No signal in the no-primary control. |
SLC34A2 is an eight-pass membrane transporter expected at the apical surface, including enterocyte brush borders (UniProt O95436 topology and subcellular location). In paraffin-section IHC, look for strong staining in lung alveolar type II cells and membranous staining in the female genital tract; small-intestinal enterocyte microvilli show medium staining (HPA: Enhanced tissue-IHC reliability; HPA: High in alveolar type II cells; HPA: Medium in enterocyte microvilli).
| Strong staining outlines alveolar type II cells or highlights an epithelial apical surface. | This fits the expected IHC pattern when the stained cells and surface can be identified on the section (HPA: High in alveolar type II cells; HPA: membranous tissue profile; UniProt O95436: apical membrane). |
| Nuclear staining dominates a tissue-IHC slide while the expected epithelial membrane is faint. | Treat this as a compartment mismatch and investigate an artefact before scoring it as the expected IHC result (UniProt O95436: apical membrane; HPA: membranous tissue profile). Nuclear signal has separate ICC-IF support and needs its own context (HPA: supported nucleoplasm in ICC-IF). |
| Adipocytes or other cells listed as undetected stain more strongly than the expected epithelial cells. | Consider cross-reactivity or endogenous detection activity, then check the detection controls and tissue morphology (HPA: Not detected in adipocytes of adipose tissue; general IHC practice). Do not infer target expression from color alone. |
| Color spreads across several compartments or obscures cell boundaries. | Diffuse background prevents a confident apical or membranous call (UniProt O95436: apical membrane; HPA: membranous tissue profile). Check blocking, primary-antibody concentration, washing and detection controls as general IHC troubleshooting steps (general IHC practice). |
| A lung section shows no convincing alveolar type II-cell signal. | The expected positive compartment has failed on that slide; review whether alveolar type II cells are present before interpreting other tissue as negative (HPA: High in alveolar type II cells; UniProt O95436: lung expression). Then inspect assay controls and staining conditions (general IHC practice). |
| Membrane topology and apical position (UniProt O95436 topology and subcellular location) | Eight transmembrane segments support a membrane-centered readout, while the annotated apical location makes epithelial surface orientation useful for interpretation (UniProt O95436 topology and subcellular location). The supplied record does not identify the catalog antibody's epitope, so topology alone cannot predict its retrieval needs. |
| Tissue and cell context (HPA: tissue IHC) | Lung alveolar type II cells are High, enterocyte microvilli are Medium, and endometrial and fallopian-tube ciliated cells are High (HPA: tissue IHC). Match signal to the named cells and structures; a whole-tissue label is less specific than these observations. |
| Airway annotation difference (UniProt O95436; HPA: bronchus IHC) | UniProt reports alveolar type II-cell expression and no bronchiolar epithelial expression, while HPA reports High staining at bronchial ciliated-cell rootlets (UniProt O95436: lung tissue specificity; HPA: High in bronchial ciliated-cell rootlets). Record the sampled structure and morphology rather than merging these distinct observations. |
| Isoforms and glycosylation (UniProt O95436) | The record lists two isoforms and five glycosylation sites at residues 295, 308, 313, 321 and 340 (UniProt O95436: isoforms and glycosylation). Without an antibody epitope or target-specific fixation data, these annotations do not establish an IHC staining difference or retrieval setting. |
| Validation and assay scope (HPA: antibody and subcellular records) | Two rabbit polyclonal antibodies, HPA037989 and HPA066474, have Enhanced IHC status and Approved ICC status (HPA: antibody validation). HPA's ICC-IF record supports a main plasma-membrane location plus nucleoplasm and cytosol; those ICC-IF observations do not replace tissue-IHC cell and compartment criteria (HPA: subcellular ICC-IF; HPA: tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| Known-positive lung lacks a clear signal. | The section may lack identifiable alveolar type II cells, or the IHC run may have underperformed (HPA: High in alveolar type II cells; general IHC practice). | Confirm alveolar morphology and review the run's positive control, retrieval setting, primary-antibody dilution and detection steps (general IHC practice). No target-specific retrieval condition is established by the supplied sources. |
| Membrane edges are weak but diffuse color is strong. | Background can hide the expected apical or membranous pattern (UniProt O95436: apical membrane; HPA: membranous tissue profile; general IHC practice). | Review blocking, washes and primary-antibody dilution; compare a control lacking primary antibody to assess detection background (general IHC practice). |
| Undetected-cell populations stain convincingly. | Cross-reactivity or endogenous detection activity is possible when staining conflicts with the HPA cell-level reference (HPA: Not detected in adipose-tissue adipocytes; general IHC practice). | Verify cell identity and compare appropriate detection controls before calling the signal SLC34A2 (general IHC practice). |
| Nuclear staining appears on tissue IHC. | It does not match the main expected tissue-IHC membrane pattern (HPA: membranous tissue profile; UniProt O95436: apical membrane). | Score the membrane and named cell types separately, and investigate nuclear color with controls (general IHC practice). Do not dismiss the distinct ICC-IF nucleoplasm observation (HPA: supported nucleoplasm in ICC-IF). |
| Bronchial ciliary-rootlet staining seems to conflict with the lung annotation. | HPA reports High bronchial ciliated-cell rootlet staining; UniProt reports absence from bronchiolar epithelium (HPA: bronchus IHC; UniProt O95436: lung tissue specificity). | Document whether the section shows bronchus, bronchiole or alveoli and identify the stained structure before interpreting the discrepancy (HPA: bronchus and lung IHC; UniProt O95436: lung tissue specificity). |
| IF/ICC question: which compartment should be checked? | HPA supports plasma membrane as the main ICC-IF location, with additional nucleoplasm and cytosol (HPA: subcellular ICC-IF). | Interpret those ICC-IF compartments using the separate IF/ICC guide; tissue-IHC scoring here follows the cell-specific membranous pattern (HPA: subcellular ICC-IF; HPA: tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bronchus | Ciliated cells (ciliary rootlets) | High | Protein (IHC) | HPA → |
| Endometrium | Ciliated epithelial cells | High | Protein (IHC) | HPA → |
| Fallopian tube | Ciliated cells (cilia axoneme) | High | Protein (IHC) | HPA → |
| Lung | Alveolar cells type II | High | Protein (IHC) | HPA → |
| Small intestine | Enterocytes - Microvilli | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Endocrine cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot SLC34A2 staining in paraffin sections by checking retrieval, membrane localisation, cell identity and detection controls before comparing staining intensity.
A03957-1 has IHC images from paraffin sections of human lung cancer, mouse lung and rat lung (A03957-1 IHC image captions).
A03957-1 is listed for IHC in human, mouse and rat (catalog: applications and reactivity). Its IHC images show paraffin sections of human lung cancer, mouse lung and rat lung (A03957-1 IHC image captions).
Which to pick: Choose A03957-1 for chromogenic IHC on paraffin sections; its images document EDTA retrieval at pH 8.0, 2 μg/ml primary antibody and peroxidase/DAB detection (A03957-1 IHC image captions). It is the available cross-species choice for human, mouse and rat tissue (catalog: reactivity; A03957-1 IHC image captions). No IF/ICC-validated SKU is supplied (catalog: applications and IF image captions); fixation and clonality are unreported (A03957-1 IHC image captions; catalog: clone).