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- Table of Contents
Plan paraffin-section TAOK1 IHC around the reported cytoplasmic and membranous tissue pattern (HPA tissue IHC). The guide highlights high staining in neuronal cells and hepatocytes, alongside the reported low consistency between antibody staining and RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic (UniProt); membranous tissue staining (HPA tissue IHC) | |
| Staining pattern | General cytoplasmic and membranous staining (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6.0 HIER, 95–98 °C, 20 min (rule: cytoplasmic / membrane antigen) | |
| Positive control | Adipose tissue+4 more · see all | |
| Negative control | None in HPA (detected in all 44 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Staining and RNA expression show low consistency (HPA tissue IHC) | |
| Regulation | Stimulus-linked expression change is unreported (UniProt) | |
| Isoform / epitope | 3 isoforms; antibody epitope coverage is unspecified (UniProt; datasheet) |
Compare the catalog antibody’s IHC-P protocol (datasheet) with published TAOK1 tissue protocols using chromogenic detection (PMC11855378; PMC11920640).
| Sample | Paraffin-embedded human breast carcinoma tissue; fixative not specified (datasheet A07063) |
| Fixation | Image fixative and duration unreported (datasheet A07063); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat-induced epitope retrieval in citrate buffer, pH 6.0, 20 min at 95–98 °C (standard rule: cytoplasmic / membrane antigen) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit anti-TAOK1, 1:100 - 1:300 (datasheet A07063) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | TAOK1-positive staining in adipocytes of adipose tissue (HPA tissue IHC: High). HPA tissue profile: General cytoplasmic and membranous expression. No signal in the no-primary control. |
TAOK1 is cytoplasmic (UniProt Q7L7X3) and has no transmembrane segment (UniProt Q7L7X3 topology). In paraffin sections, expect cytoplasmic staining, sometimes with a membranous appearance, in cell types including cortical neurons and hepatocytes (HPA tissue IHC). HPA rates its tissue IHC pattern Approved but reports low consistency with RNA expression (HPA tissue IHC); treat the pattern as a guide to interpretation, not proof of specificity.
| Cytoplasmic staining in cortical neurons or hepatocytes, with possible membrane-associated staining. | This fits HPA's general cytoplasmic and membranous IHC profile; both cell types are reported High (HPA tissue IHC). Cytoplasmic localisation also agrees with UniProt Q7L7X3. Compare the stained cells with tissue morphology before scoring the result (general IHC practice). |
| Predominantly nuclear staining with little cytoplasmic signal. | A nuclear-dominant pattern does not match the supplied cytoplasmic localisation (UniProt Q7L7X3) or HPA's tissue IHC profile (HPA tissue IHC). Treat it as suspect and check the counterstain, detection controls and antibody conditions before assigning it to TAOK1 (general IHC practice). |
| Conspicuous staining in a cell population expected to stain weakly. | HPA reports Low staining in colon glandular cells, but provides no negative tissue group (HPA tissue IHC). Strong signal there deserves scrutiny for antibody cross-reactivity or endogenous detection activity; it is not, by itself, proof of either cause (general IHC practice). |
| Diffuse colour across cells and surrounding tissue, obscuring compartment boundaries. | This is background rather than an interpretable TAOK1 distribution (general IHC practice). Assess a no-primary control and review blocking, washes and chromogen development; HPA's Approved rating and RNA-expression inconsistency do not identify the source of background (HPA tissue IHC). |
| No detectable signal in cortical neurons on an otherwise readable section. | Cortical neurons are reported High by HPA, so absent staining challenges the run (HPA tissue IHC). Check the tissue and assay controls, retrieval and detection workflow (general IHC practice). A failed run cannot establish that the sampled cells lack TAOK1. |
| Compartment and topology | UniProt places TAOK1 in the cytoplasm and reports no transmembrane segment (UniProt Q7L7X3 topology). HPA describes cytoplasmic and membranous tissue staining (HPA tissue IHC). Interpret a membrane outline alongside cytoplasmic signal; do not infer that TAOK1 spans the membrane. |
| Choice of comparison tissue | Cortical neurons and hepatocytes are reported High, while colon glandular cells are reported Low (HPA tissue IHC). These are useful relative comparisons, but Low is not a negative control: HPA supplies no negative tissue entries (HPA tissue IHC). |
| Strength of the tissue evidence | HPA labels the tissue IHC profile Approved while noting low consistency between antibody staining and RNA expression (HPA tissue IHC). The listed High and Low levels describe observed staining; they should not be treated as independently confirmed protein abundance in every specimen. |
| Antibody validation | HPA007669 has Approved IHC status, whereas the other listed antibodies have no IHC status in the supplied record (HPA antibodies). Antibody identities are not interchangeable evidence for a particular tissue result; check which antibody produced the image being compared (general IHC practice). |
| Isoforms and processing | UniProt lists three TAOK1 isoforms, one 1–1001 chain, and no signal peptide or propeptide (UniProt Q7L7X3). The supplied record gives no antibody epitope or isoform-specific staining evidence, so an unusual pattern cannot be assigned to a particular isoform. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected cytoplasmic signal is absent in a reported High tissue. | An assay failure is possible; cortical neurons and hepatocytes are reported High, but HPA staining is not a guarantee for each specimen (HPA tissue IHC). | Confirm tissue identity and section quality, inspect the positive control, then review the antibody's stated IHC conditions, retrieval and detection steps (general IHC practice). Do not infer a TAOK1-negative specimen until the run is valid. |
| Strong nuclear staining dominates the section. | This conflicts with TAOK1's cytoplasmic annotation (UniProt Q7L7X3) and HPA's tissue pattern (HPA tissue IHC); the supplied evidence does not identify a specific mechanism. | Compare with a no-primary control and a reported High cell population. Review counterstain and detection settings before scoring nuclear colour as specific (general IHC practice). |
| A reported Low cell population stains as strongly as a reported High one. | HPA calls colon glandular cells Low and cortical neurons High, but supplies no negative tissue category (HPA tissue IHC). Cross-reactivity or endogenous detection activity are possibilities, not established diagnoses (general IHC practice). | Compare matched sections and no-primary controls under the same detection conditions; score cell type, compartment and intensity together (general IHC practice). |
| Colour is diffuse or persists in the no-primary control. | Background or endogenous detection activity can obscure cellular staining (general IHC practice). HPA's TAOK1 profile does not determine which workflow step caused it (HPA tissue IHC). | Check blocking appropriate to the detection system, washing and chromogen development, then reassess whether cytoplasmic boundaries can be resolved (general IHC practice). |
| Membrane-like staining appears without an obvious cytoplasmic component. | HPA describes membranous tissue staining, but UniProt reports a cytoplasmic protein without a transmembrane segment (HPA tissue IHC; UniProt Q7L7X3 topology). An isolated membrane outline therefore needs cautious interpretation. | Inspect cell morphology and compare with cytoplasmic staining in a reported High population; check detection controls before calling the outline TAOK1-positive (general IHC practice). |
| How should an IF/ICC image be compared with the IHC result? | HPA supports cytosolic ICC-IF localisation; plasma-membrane and primary-cilium assignments are uncertain, and vesicle localisation is Approved (HPA subcellular ICC-IF). These confidence labels differ from the tissue IHC assessment. | Use the separate IF/ICC guide for that application. Here, use the ICC-IF record only as localisation context; do not treat an uncertain IF location as a required paraffin IHC pattern (HPA subcellular ICC-IF; HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | High | Protein (IHC) | HPA → |
| Caudate | Neuronal cells | High | Protein (IHC) | HPA → |
| Cerebellum | Cells in molecular layer | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Cervix | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: TAOK1 is detected in all 44 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot TAOK1 chromogenic IHC in paraffin sections by checking retrieval, staining compartment, controls, and scoring consistency.
A07063 has an IHC image from a human paraffin-embedded breast carcinoma section (catalog image caption); IF is listed without an IF image (catalog applications and image records).
A07063 is listed for IHC and IF/ICC in human, mouse, and rat (catalog applications and reactivity). Its IHC image shows a human paraffin-embedded breast carcinoma section with a peptide-blocked comparison (catalog image caption).
Which to pick: For tissue IHC, choose A07063 for paraffin sections; its image documents that processing, but the fixative is unreported (catalog image caption). For IF/ICC or work across human, mouse, and rat, A07063 is the listed rabbit polyclonal option, with IF/ICC applications and those species in the catalog; no IF image is supplied (catalog host, dilution record, applications, reactivity, and image records).