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- Table of Contents
Plan TGM2 paraffin IHC around cytoplasmic staining in placental decidual cells and endometrial stromal fibroblasts (HPA tissue IHC). Score cellular and extracellular staining separately because TGM2 can be secreted to the extracellular matrix (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic in tissue (HPA tissue IHC); extracellular matrix localization also reported (UniProt) | |
| Staining pattern | Cytoplasmic staining in decidual cells and stromal fibroblasts (HPA tissue IHC) | |
| Antigen retrieval | Tris-EDTA pH 9.0 HIER, 95–98 °C, 20 min (rule: nuclear antigen) | |
| Positive control | Endometrium+4 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Secreted TGM2 may produce extracellular matrix staining (UniProt) | |
| Regulation | Staining regulation not specified (UniProt) | |
| Isoform / epitope | 3 isoforms; epitope coverage and compartment bias unknown (UniProt) |
The catalog antibody’s IHC-P protocol is accompanied by published TGM2 methods for renal, meningioma, and colorectal specimens (PMC3292891; PMC5697495; PMC10581896).
| Sample | Tissue sections; selected-image fixative not specified (standard IHC workflow) |
| Fixation | Image fixative and duration unreported (datasheet PA2153); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat-induced epitope retrieval in Tris-EDTA buffer, pH 9.0, 20 min at 95–98 °C (standard rule: nuclear antigen) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit anti-TGM2, 0.5-1μg/ml (datasheet PA2153) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | TGM2-positive staining in stromal fibroblasts of endometrium (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic staining mainly in placenta, endometrium, fibromuscular tissue and smooth muscle. No signal in the no-primary control. |
TGM2 should stain mainly in the cytoplasm, with prominent IHC signal in endometrial stromal fibroblasts and placental decidual cells (HPA: Enhanced tissue IHC; High in both cell types). Cytosol is its main location; lower nuclear signal and extracellular matrix localization are possible (UniProt P21980: subcellular location). TGM2 has no transmembrane segment (UniProt P21980: topology).
| Strong cytoplasmic staining in endometrial stromal fibroblasts or placental decidual cells. | This matches the clearest reported tissue pattern (HPA: High in both cell types; Enhanced tissue IHC). Score the named cells separately from adjacent structures, since a tissue-level result can conceal cell-specific differences (general IHC practice). |
| Cytoplasmic staining in cardiomyocytes, alveolar cells, or smooth muscle cells. | A moderate signal is consistent with the reported pattern (HPA: Medium in these cell types). Weaker staining than in the High examples can still be expected; compare like-for-like sections and detection settings before interpreting intensity differences (HPA: tissue IHC; general IHC practice). |
| Predominantly intense nuclear staining with little or no cytoplasmic signal. | Review this as a possible compartment artefact: TGM2 is mainly cytosolic, although lower nuclear and chromatin localization is reported (UniProt P21980: subcellular location). Nuclear staining alone cannot prove specificity; check an appropriate control and the accompanying cytoplasmic pattern (general IHC practice). |
| Strong staining in a cell population reported as Not detected, such as adrenal glandular cells. | The pattern conflicts with the HPA observation for that cell type (HPA: adrenal glandular cells, Not detected). Cross-reactivity or endogenous chromogenic detection activity is possible; verify the stained cells and compare a no-primary control (general IHC practice). |
| Diffuse color across cells, stroma, and section edges, or no signal in a known-positive section. | A pattern without cell-level localization suggests background, while absence from a High reference population makes the run difficult to interpret (general IHC practice; HPA: High in endometrial stromal fibroblasts and placental decidual cells). Check controls before assigning either result to TGM2 expression (general IHC practice). |
| Tissue and cell selection | Endometrial stromal fibroblasts and placental decidual cells offer High reference patterns; HPA reports Not detected in several specific cell populations, including adrenal glandular cells (HPA: tissue IHC). Interpret each named cell population rather than treating an entire organ as uniformly positive or negative (general IHC practice). |
| Compartment and extracellular signal | Cytosol is the principal location; lower nuclear and chromatin localization and secretion to extracellular matrix are also reported (UniProt P21980: subcellular location). Matrix-associated color may warrant review, but it should be judged against tissue structure and controls before being assigned to TGM2 (general IHC practice). |
| Protein topology and processing | TGM2 has no transmembrane segment or signal peptide and is reported to reach extracellular matrix by a non-classical secretion pathway (UniProt P21980: topology, processing, subcellular location). Membrane-associated staining is therefore possible without interpreting TGM2 as a membrane-spanning protein (UniProt P21980: topology; HPA: ICC-IF plasma membrane localization). |
| IHC antibody validation | Three listed antibodies have Enhanced IHC status; this supports the reported tissue pattern through independent antibodies or orthogonal data (HPA: antibody validation). It does not establish that every antibody or detection setup will produce identical intensity (HPA: antibody validation; general IHC practice). |
| IF/ICC: where should signal appear? | Mainly in the cytosol, with additional plasma membrane localization in the HPA ICC-IF record (HPA: subcellular location, approved). This describes the expected IF/ICC compartment and does not specify an IF/ICC protocol or establish an identical appearance in paraffin IHC (HPA: ICC-IF; general IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in endometrial stromal fibroblasts or placental decidual cells. | These cells are reported High, so absent staining raises a run or specimen concern; it does not by itself establish loss of TGM2 (HPA: tissue IHC; general IHC practice). | Review the positive control, antibody dilution, retrieval and detection steps, then repeat with a matched known-positive section if needed (general IHC practice). |
| Strong nuclear signal dominates while cytoplasm remains pale. | This differs from the mainly cytosolic pattern, although lower nuclear localization is documented (UniProt P21980: subcellular location). | Inspect morphology and the no-primary control; compare a known-positive section before accepting nuclear staining as specific (general IHC practice). |
| Color appears in HPA Not detected cells. | Cell identification, cross-reactivity, or endogenous detection activity may explain a discordant result (HPA: tissue IHC; general IHC practice). | Confirm the cell type, examine a no-primary control, and review the detection-blocking step appropriate to the chromogen system (general IHC practice). |
| Diffuse color obscures the cytoplasmic pattern. | Nonspecific background can prevent cell-level interpretation (general IHC practice). | Check no-primary and reagent controls, then review blocking, washes, antibody dilution and development time (general IHC practice). |
| Extracellular or membrane-edge color is the only apparent signal. | TGM2 can occur in extracellular matrix, and ICC-IF also reports plasma membrane localization; color at an edge alone remains ambiguous (UniProt P21980: subcellular location; HPA: ICC-IF). | Check whether staining follows recognizable matrix or cell boundaries and whether the positive control shows the expected cytoplasmic signal (general IHC practice; HPA: tissue IHC). |
| A section gives weaker staining than the High reference tissue. | Some HPA-listed cell types are Medium or Low, and intensity also depends on the staining run (HPA: tissue IHC; general IHC practice). | Compare the same cell type under matched conditions and retain a High reference section in the run before calling the weaker result negative (HPA: tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data. At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex. Antibody staining in cells/structures not annotated, view images.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Endometrium | Stromal fibroblasts | High | Protein (IHC) | HPA → |
| Placenta | Decidual cells | High | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Medium | Protein (IHC) | HPA → |
| Lung | Alveolar cells | Medium | Protein (IHC) | HPA → |
| Smooth muscle | Smooth muscle cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Use compartment and cell type controls to interpret TGM2 staining in paraffin section IHC (UniProt P21980 localisation; HPA tissue IHC).
Catalog images document TGM2 IHC in human cancer tissues and mouse and rat spleen (PA2153 and PB9448 image captions). PA2153 lists ICC, but supplies no IF image (PA2153 catalog).
PA2153 is the only rendering SKU; its own IHC(P) image shows human lung cancer tissue (PA2153 image caption). It lists Human/Rat reactivity and ICC as an application, without an IF image (PA2153 catalog).
Which to pick: Choose PA2153 for human paraffin-section IHC because its own image documents human lung cancer tissue; the fixative is unreported (PA2153 image caption). For ICC, PA2153 lists 0.5–1 μg/ml, but supplies no IF image (PA2153 catalog). For cross-species tissue IHC, PB9448 lists Human/Mouse/Rat reactivity and has paraffin-section images from human cancers and mouse and rat spleen; those captions do not report the fixative (PB9448 catalog and image captions).