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- Table of Contents
Plan paraffin-section TTK IHC with the catalog antibody at 0.5–1 μg/mL (datasheet: A01132-1). Compare cytoplasmic staining in lymph-node germinal center cells with the not-detected signal in heart cardiomyocytes, and score by cell type (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in proliferative cells (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic signal, most abundant in proliferative cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01132-1) | |
| Positive control | Epididymis+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Staining has medium RNA concordance; retesting is pending (HPA tissue IHC) | |
| Regulation | Higher in proliferative cells (HPA tissue IHC) | |
| Isoform / epitope | 2 isoforms; verify epitope coverage (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A01132-1) is followed by two published TTK IHC protocols (PMC8721040; PMC13163004).
| Sample | Paraffin-embedded human rectal cancer tissue; fixative not specified (datasheet A01132-1) |
| Fixation | Image fixative and duration unreported (datasheet A01132-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01132-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01132-1) |
| Primary antibody | Rabbit anti-TTK, 0.5-1μg/ml (datasheet A01132-1) |
| Primary incubation | Overnight at 4 °C (datasheet A01132-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01132-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | TTK-positive staining in glandular cells of epididymis (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in several different cell types, most abundant in highly proliferative cells. No signal in the no-primary control. |
In paraffin-section IHC, expect mainly cytoplasmic TTK staining, most conspicuous in highly proliferative cells (HPA tissue IHC). HPA reports High staining in lymph-node and tonsil germinal-center cells and testis pachytene spermatocytes (HPA tissue IHC). TTK has no transmembrane segment (UniProt P33981 topology). Tissue-IHC reliability is Enhanced, with medium staining–RNA consistency and retesting pending (HPA tissue IHC).
| Cytoplasmic staining in germinal-center cells or pachytene spermatocytes, with weaker neighboring cells. | This fits HPA's High staining in those named cell populations and its broader cytoplasmic profile (HPA tissue IHC). Score the specified cells and their compartment; a positive tissue does not imply uniform staining across every cell in the section (HPA tissue IHC). |
| Signal appears only at cell borders or exclusively throughout nuclei in the expected positive cells. | That differs from the mainly cytoplasmic tissue-IHC profile (HPA tissue IHC). Review morphology and detection background before calling it TTK; approved nucleolar localization comes from ICC-IF and does not establish an exclusively nuclear IHC pattern (HPA subcellular ICC-IF). |
| Strong staining dominates adipocytes or cardiomyocytes while the expected positive cells are weak. | HPA reports TTK as not detected in adipocytes and cardiomyocytes (HPA tissue IHC). Check whether the signal follows the cell type or the detection chemistry; cross-reactivity or endogenous detection activity can produce misleading chromogenic staining (general IHC practice). |
| Brown signal coats many structures without clear cell boundaries or a distinct cytoplasmic pattern. | Diffuse staining is difficult to attribute to TTK when it obscures HPA's cell-specific cytoplasmic profile (HPA tissue IHC). Compare a no-primary control and inspect blocking, washing, and chromogen development for nonspecific or endogenous signal (general IHC practice). |
| No convincing signal appears in lymph-node germinal-center cells or testis pachytene spermatocytes. | These are HPA High reference populations, so a blank result calls for an assay check before a biological negative call (HPA tissue IHC). Confirm cell identity and section quality, then review the IHC-validated antibody and its established retrieval and detection conditions (general IHC practice). |
| Reference-cell selection and proliferation | Germinal-center cells and pachytene spermatocytes provide HPA High tissue-IHC references; bone-marrow hematopoietic cells are Medium (HPA tissue IHC). UniProt reports TTK in rapidly proliferating cell lines, consistent with prioritizing proliferative populations, while the HPA calls remain cell-type specific (UniProt P33981 tissue specificity; HPA tissue IHC). |
| Tissue-IHC evidence strength | HPA labels tissue-IHC reliability Enhanced but notes medium consistency with RNA and pending retesting (HPA tissue IHC). Its listed mouse monoclonal CAB013229 has Enhanced IHC validation; the two listed rabbit antibodies have ICC approval without an IHC status in this payload (HPA antibodies). |
| Compartment and topology | HPA tissue IHC describes cytoplasmic expression, and UniProt lists no transmembrane segment (HPA tissue IHC; UniProt P33981 topology). TTK's spindle-checkpoint function does not, by itself, establish visible kinetochore staining in paraffin sections (UniProt P33981 function; general IHC interpretation). |
| Isoforms and epitope coverage | UniProt lists 2 TTK isoforms and a protein-kinase domain at residues 525–791 (UniProt P33981). The supplied record gives no antibody epitope, so isoform coverage cannot be inferred; consult the IHC-validated antibody's documented target region when interpreting a discrepant result (general IHC practice). |
| IF/ICC Q: Should the IHC pattern match ICC-IF exactly? | A: HPA ICC-IF places TTK mainly in the cytosol and additionally in nucleoli, both approved locations (HPA subcellular ICC-IF). Tissue IHC reports a cytoplasmic profile (HPA tissue IHC). Use the tissue-IHC evidence to judge paraffin sections; the ICC-IF observation alone does not require visible nucleoli in IHC. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected positive cells are blank in an IHC run. | An assay or detection failure is possible when HPA High reference cells lack signal (HPA tissue IHC; general IHC practice). | Check a known-positive section, antibody application, retrieval, and chromogenic detection against the validated IHC workflow (general IHC practice). |
| Only a faint signal appears in bone marrow. | HPA rates hematopoietic cells Medium, below its High germinal-center and pachytene-spermatocyte examples (HPA tissue IHC). | Compare matched runs with an HPA High reference population before treating a weaker bone-marrow result as failure (HPA tissue IHC; general IHC practice). |
| Brown staining appears in adipocytes or cardiomyocytes. | HPA reports both cell populations as not detected; nonspecific antibody binding or endogenous detection activity is possible (HPA tissue IHC; general IHC practice). | Identify the stained cells on the counterstain and compare a no-primary control; review the detection blocking step (general IHC practice). |
| Signal is diffuse across the section. | Poorly resolved chromogen or background can conceal the cytoplasmic, cell-specific profile described by HPA (HPA tissue IHC; general IHC practice). | Inspect no-primary control, wash performance, blocking, and chromogen development; score only cells with interpretable morphology (general IHC practice). |
| Staining is exclusively membranous or nuclear. | That distribution conflicts with HPA's chiefly cytoplasmic tissue-IHC profile; ICC-IF additionally reports nucleoli, not an exclusively nuclear pattern (HPA tissue IHC; HPA subcellular ICC-IF). | Recheck cell boundaries, counterstain, and controls, then compare localization in an HPA High reference cell type (HPA tissue IHC; general IHC practice). |
| Two TTK antibodies give different staining patterns. | HPA lists 2 isoforms, but the supplied evidence gives no epitopes; antibody-dependent recognition remains unresolved (UniProt P33981 isoforms; HPA antibodies). | Compare each antibody's documented IHC validation and target region, and prioritize the pattern in HPA-defined cells; CAB013229 has Enhanced IHC status in the supplied list (HPA antibodies; HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Pending retesting.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Epididymis | Glandular cells | High | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | High | Protein (IHC) | HPA → |
| Rectum | Glandular cells | High | Protein (IHC) | HPA → |
| Testis | Pachytene spermatocytes | High | Protein (IHC) | HPA → |
| Tonsil | Germinal center cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Liver | Cholangiocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot TTK staining in paraffin sections by checking retrieval, cellular localisation, controls, and scoring before interpreting the chromogenic signal.
The IHC-validated antibody has paraffin-section images from human rectal cancer and rat intestine (catalog IHC captions), plus IF data from A431 cells (catalog IF caption).
A01132-1 will render with an IHC figure from a paraffin-embedded human rectal cancer section (catalog IHC caption). The same SKU also has a rat intestine IHC image and an A431-cell IF image (catalog IHC and IF captions).
Which to pick: Choose A01132-1 for paraffin-section IHC; its human rectal cancer caption documents EDTA retrieval at pH 8.0 and 1 μg/ml primary antibody, but does not report the fixative (catalog IHC caption). For IF/ICC, A01132-1 has an A431-cell IF image using 2 μg/ml primary antibody (catalog IF caption). For cross-species planning, A01132-1 lists human, mouse and rat reactivity (catalog reactivity); its supplied IHC images document human and rat tissue only (catalog IHC captions).