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- Table of Contents
Assess TTK staining in paraffin sections using lymph node germinal center cells as a positive reference (HPA tissue IHC). This guide covers the catalog antibody’s 0.5–1 μg/mL IHC range (datasheet A01132-1) and how to interpret its cytoplasmic tissue pattern (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in several cell types (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining, most abundant in proliferative cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01132-1) | |
| Positive control | Epididymis+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific) | |
| Caveat | Proliferative-cell abundance can shift staining (HPA tissue IHC) | |
| Regulation | Enriched in proliferative cells (HPA tissue IHC) | |
| Isoform / epitope | Two isoforms; check epitope coverage across both (UniProt) |
The catalog antibody’s IHC-P protocol uses EDTA pH 8.0 retrieval (datasheet A01132-1). The published TTK IHC protocols below provide tissue-specific preparation, staining, and scoring details (PMC4453723; PMC8721040; PMC13163004).
| Sample | Paraffin-embedded human rectal cancer tissue; fixative not specified (datasheet A01132-1) |
| Fixation | Image fixative and duration unreported (datasheet A01132-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01132-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01132-1) |
| Primary antibody | Rabbit anti-TTK, 0.5-1μg/ml (datasheet A01132-1) |
| Primary incubation | Overnight at 4 °C (datasheet A01132-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01132-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | TTK-positive staining in glandular cells of epididymis (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in several different cell types, most abundant in highly proliferative cells. No signal in the no-primary control. |
In paraffin-section IHC, expect predominantly cytoplasmic TTK staining, most conspicuous in highly proliferative cells, including germinal center cells and pachytene spermatocytes (HPA: tissue IHC). HPA rates the tissue pattern Enhanced, but reports medium agreement with RNA expression and pending retesting (HPA: tissue IHC). TTK has no annotated transmembrane segment; UniProt does not assign it a subcellular location (UniProt P33981: topology and subcellular annotation).
| Cytoplasmic staining in tonsil or lymph-node germinal center cells, with weaker surrounding cells. | This fits the reported distribution: germinal center cells stain High, and the overall IHC profile favors highly proliferative cells (HPA: tissue IHC). Compare cells within the same section before judging intensity; HPA levels describe observed staining, not an absolute scoring threshold. |
| A predominantly nuclear or membranous IHC signal with little cytoplasmic staining. | Review compartment assignment and controls before calling this TTK. HPA describes cytoplasmic tissue staining, while UniProt lists no transmembrane segment (HPA: tissue IHC; UniProt P33981: topology). An unexpected compartment can indicate nonspecific detection; it is not, by itself, proof of an artefact. |
| Strong staining in adipocytes, cardiomyocytes, or smooth muscle cells. | These cell types are reported as Not detected (HPA: tissue IHC). Check whether the signal follows tissue pigment, endogenous enzyme activity, or nonspecific antibody binding (general chromogenic IHC practice). An unexpected positive warrants controls before being interpreted as TTK. |
| A uniform haze across cells and surrounding tissue that obscures cell boundaries. | This does not resolve the reported cell-selective cytoplasmic pattern (HPA: tissue IHC). Assess background with an appropriate negative reagent control, then review blocking, wash steps, detection chemistry, and primary-antibody concentration (general IHC practice). |
| No staining in a well-preserved tonsil germinal center or testis pachytene-spermatocyte control. | Both cell populations are reported High and can serve as positive-reference areas (HPA: tissue IHC). First confirm that the expected cells are present; then check the assay controls and the antibody's documented IHC-P conditions (general IHC practice). A failed control leaves the sample result uninterpretable. |
| Tissue and cell selection | HPA reports High staining in tonsil and lymph-node germinal center cells, testis pachytene spermatocytes, and epididymal and rectal glandular cells; adipocytes, cardiomyocytes, and smooth muscle cells are Not detected (HPA: tissue IHC). Score the named cell population, not the whole tissue. |
| Strength of tissue evidence | The tissue IHC assessment is Enhanced, with medium consistency between antibody staining and RNA expression and retesting pending (HPA: tissue IHC). Treat the reported pattern as a useful reference rather than a guarantee for every section or antibody. |
| IHC versus IF/ICC compartment | Q: Should IF/ICC show only the IHC pattern? A: HPA reports cytosol as the approved main IF/ICC location and nucleoli as an approved additional location; its tissue IHC summary describes cytoplasmic staining (HPA: subcellular ICC-IF; HPA: tissue IHC). Interpret the two applications separately. |
| Antibody validation and isoforms | CAB013229 has Enhanced IHC status, whereas HPA058657 and CAB010166 have Approved ICC status without a listed IHC status (HPA: antibodies). UniProt lists two TTK isoforms; epitope coverage for a chosen antibody is not supplied here (UniProt P33981: isoforms). |
| Antigen retrieval and epitope access | Retrieval conditions should follow the selected antibody's documented IHC-P method and be checked against controls (general IHC practice). The supplied HPA and UniProt records do not establish a TTK-specific retrieval requirement or fixation sensitivity. |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive-reference germinal center cells are blank. | The expected cell population may be absent from the section, or the IHC assay may have failed (HPA: High in germinal center cells; general IHC practice). | Confirm germinal centers on the counterstained section, then review the IHC-validated antibody's documented conditions, retrieval, detection reagents, and a working positive control (general IHC practice). |
| All tissue compartments show similar chromogen. | Diffuse nonspecific binding or detection background may be overwhelming the cell-selective pattern (HPA: tissue IHC; general IHC practice). | Run a negative reagent control and inspect blocking, washes, detection chemistry, and primary-antibody concentration under the documented IHC-P method (general IHC practice). |
| Strong color appears in HPA-reported Not detected cells. | Possible cross-reactivity, endogenous detection activity, or misleading pigment should be considered; HPA reports no detectable staining in those named cells (HPA: tissue IHC; general chromogenic IHC practice). | Compare with a negative reagent control and with an HPA-reported High cell population on a matched run; inspect whether color follows cells, pigment, or background (general IHC practice). |
| Signal appears mainly membranous or nuclear in IHC. | The compartment conflicts with HPA's cytoplasmic tissue summary; a membrane interpretation also lacks support from UniProt topology (HPA: tissue IHC; UniProt P33981: topology). | Recheck morphology and counterstain, examine a positive-reference cell population, and verify the IHC-validated antibody's documented application before assigning localisation (general IHC practice). |
| IF/ICC shows cytosol plus nucleoli, while IHC appears cytoplasmic. | Those findings can coexist: HPA approves cytosol as the main ICC-IF location and nucleoli as an additional location, while summarizing tissue IHC as cytoplasmic (HPA: subcellular ICC-IF; HPA: tissue IHC). | Record application and compartment separately. Consult the dedicated IF/ICC guide for that application's controls; do not infer an IHC-P condition from ICC approval (HPA: antibodies; general assay practice). |
| A sample is weak while its positive-reference tissue stains. | TTK staining varies by tissue and cell population; HPA includes Medium, Low, and Not detected categories alongside High populations (HPA: tissue IHC). | Identify the sample's cell type and compare with its HPA tissue category before interpreting weak signal. Keep the successful positive control in view and avoid assigning a negative result from intensity alone (HPA: tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Pending retesting.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Epididymis | Glandular cells | High | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | High | Protein (IHC) | HPA → |
| Rectum | Glandular cells | High | Protein (IHC) | HPA → |
| Testis | Pachytene spermatocytes | High | Protein (IHC) | HPA → |
| Tonsil | Germinal center cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Liver | Cholangiocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot TTK staining in paraffin sections by checking retrieval, cell type, compartment and controls before comparing signal across samples.
A01132-1 has IHC images from paraffin sections of human rectal cancer and rat intestine (catalog: IHC image captions), plus an IF image from A431 cells (catalog: IF image caption).
A01132-1 is listed for IHC, IF and ICC; its IHC images show paraffin sections of human rectal cancer and rat intestine (catalog: applications; IHC image captions). Its IF image shows A431 cells, while its listed reactivity covers human, mouse and rat (catalog: IF image caption; reactivity).
Which to pick: Choose A01132-1 for paraffin tissue IHC: its own captions show EDTA retrieval at pH 8.0 and 1 μg/ml primary antibody in human rectal cancer and rat intestine; the fixative is unreported (catalog: IHC image captions). For IF/ICC, the same SKU has an A431 cell IF image and a listed IF/ICC concentration of 2 μg/ml for human samples (catalog: IF image caption; dilution_raw). For cross-species work, A01132-1 lists human, mouse and rat reactivity, but its IHC dilution is specified for human and rat and its IF/ICC dilution for human; clonality is unreported.