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- Table of Contents
Plan chromogenic VDAC1 IHC in paraffin sections using the widespread cytoplasmic staining as a reference pattern (HPA tissue IHC). Lung macrophages and kidney collecting ducts are high-staining positive controls (HPA tissue IHC); the IHC-validated antibody A01168-1 has a stated range of 2–5 μg/mL (datasheet: A01168-1).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining (HPA tissue IHC); outer mitochondrial membrane expected (UniProt) | |
| Staining pattern | Widespread cytoplasmic staining; Purkinje cells also show membrane staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01168-1) | |
| Positive control | Cerebellum+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A01168-1) | |
| Caveat | Ubiquitous staining limits the choice of negative tissue controls (HPA tissue IHC) | |
| Regulation | No specific expression regulator reported (UniProt) | |
| Isoform / epitope | No annotated isoforms; antibody epitope orientation is unspecified (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet A01168-1) is followed by three published VDAC1 IHC protocols for breast tissue, oral tissue, and bone marrow smears (PMC7904344; PMC10093190; PMC8808998).
| Sample | Paraffin-embedded human lymphadenoma tissue; fixative not specified (datasheet A01168-1) |
| Fixation | Image fixative and duration unreported (datasheet A01168-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01168-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01168-1) |
| Primary antibody | Rabbit anti-VDAC1, 2-5 μg/ml (datasheet A01168-1) |
| Primary incubation | Overnight at 4 °C (datasheet A01168-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A01168-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | VDAC1-positive staining in purkinje cells - cytoplasm/membrane of cerebellum (HPA tissue IHC: High). HPA tissue profile: Ubiquitous cytoplasmic expression. No signal in the no-primary control. |
VDAC1 should stain predominantly in the cytoplasm, consistent with its mitochondrial outer-membrane location and 19 transmembrane segments (HPA: ubiquitous cytoplasmic expression; UniProt P21796 topology). High staining is reported in lung macrophages, kidney collecting ducts, liver cholangiocytes, and several other cell populations (HPA: tissue IHC). HPA rates the tissue pattern Supported, with medium consistency between antibody staining and RNA expression (HPA: reliability).
| Cytoplasmic staining in lung macrophages, kidney collecting ducts, or liver cholangiocytes. | These are reported high-staining populations (HPA: tissue IHC). A granular appearance is compatible with mitochondrial localisation, but chromogenic IHC alone cannot identify individual mitochondria (UniProt P21796 subcellular location; general IHC practice). |
| Strong staining confined to nuclei, with little cytoplasmic signal. | A predominantly nuclear pattern conflicts with the reported cytoplasmic tissue staining and membrane localisation (HPA: tissue IHC; UniProt P21796 subcellular location). Assess it as possible artefact; membrane-associated staining alone is not automatically suspect because cell-membrane localisation is also reported (UniProt P21796 subcellular location). |
| Strong signal mainly in HPA-low cells while nearby HPA-high cells remain unstained. | This reversal raises concern for cross-reactivity or endogenous detection activity (HPA: tissue IHC; general IHC practice). VDAC1 expression is widespread, so staining outside the listed high populations is not, by itself, evidence of a false positive (HPA: ubiquitous cytoplasmic expression). |
| Uniform colour across tissue, including spaces outside cells. | This does not match the reported cellular cytoplasmic pattern (HPA: tissue IHC). Diffuse background can arise from nonspecific detection or inadequately controlled chromogen development; interpret localisation only after checking an appropriate detection control (general IHC practice). |
| No signal in a reported high-staining population. | Absence in lung macrophages, kidney collecting ducts, or liver cholangiocytes conflicts with the HPA tissue pattern (HPA: High in these cells). First consider assay performance and whether the relevant cells are present; HPA's Supported rating does not guarantee staining in every specimen (HPA: reliability; general IHC practice). |
| Subcellular location and topology | Mitochondrial outer-membrane localisation supports a cytoplasmic IHC pattern; cell-membrane localisation is also reported (UniProt P21796 subcellular location). The 19 transmembrane segments describe protein topology, not the accessibility of this antibody's epitope (UniProt P21796 topology). |
| Variation among cell populations | High staining is reported in selected cells, including Purkinje cells and lymph-node germinal-center cells; low staining is reported in adipocytes and smooth-muscle cells (HPA: tissue IHC). Compare identified cell populations rather than treating every cell in a section as an equal positive control (general IHC practice). |
| Strength of tissue evidence | HPA calls the overall tissue pattern Supported and reports medium consistency with RNA expression (HPA: reliability). Its three listed antibodies have IHC status Supported; these records do not establish identical staining with every antibody or specimen (HPA: antibody validation). |
| Choice of low-staining comparison | Thyroid glandular cells and adipocytes are listed as low, not negative (HPA: tissue IHC). Residual staining there need not invalidate a run; an unusually strong signal is more informative when assessed alongside a reported high-staining population and a detection control (HPA: tissue IHC; general IHC practice). |
| Can the IHC pattern be assumed for IF/ICC? | No confirmed HPA subcellular location or ICC-IF images are supplied (HPA: subcellular record). Mitochondrial localisation provides a biological expectation, but an IF/ICC pattern needs its own validation; this tissue-IHC interpretation does not establish one (UniProt P21796 subcellular location; HPA: subcellular record). |
| Situation | Likely cause | Next action |
|---|---|---|
| High-staining reference cells show no colour. | The assay may have failed, or the expected cells may be absent from the section (HPA: tissue IHC; general IHC practice). | Confirm cell identity and review the IHC run's antibody, detection, and retrieval controls (general IHC practice). No VDAC1-specific retrieval condition is established here. |
| Nuclear staining dominates. | This conflicts with the reported cytoplasmic pattern (HPA: tissue IHC). Nonspecific staining or misread counterstain is possible (general IHC practice). | Compare counterstain and detection controls, then reassess cytoplasmic signal in a reported high-staining population (HPA: tissue IHC; general IHC practice). |
| Colour covers the section rather than identifiable cells. | The pattern is inconsistent with cellular cytoplasmic expression (HPA: tissue IHC); nonspecific detection or excessive chromogen development may contribute (general IHC practice). | Inspect a detection-only control and review blocking, washes, and development under the established IHC workflow (general IHC practice). |
| HPA-low cells stain strongly while high cells do not. | Cell identification, cross-reactivity, or endogenous detection activity may explain the reversal (HPA: tissue IHC; general IHC practice). | Verify the two cell populations and check detection controls before assigning the strong signal to VDAC1 (general IHC practice). |
| A low-staining tissue still has some signal. | HPA labels these cells Low rather than negative; VDAC1 also has ubiquitous cytoplasmic expression (HPA: tissue IHC). | Judge the pattern relative to a reported high-staining population and the background control, rather than requiring zero colour (HPA: tissue IHC; general IHC practice). |
| Staining appears only along cell borders. | Cell-membrane localisation is reported, but an exclusively border-only pattern does not reflect HPA's overall cytoplasmic tissue profile (UniProt P21796 subcellular location; HPA: tissue IHC). | Check cellular morphology and cytoplasmic staining in reported high-staining cells; use a detection control to assess border artefact (HPA: tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebellum | Purkinje cells - cytoplasm/membrane | High | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
| Kidney | Collecting ducts | High | Protein (IHC) | HPA → |
| Liver | Cholangiocytes | High | Protein (IHC) | HPA → |
| Lung | Macrophages | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: VDAC1 is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot VDAC1 staining in paraffin sections by checking retrieval, controls, compartmental pattern, and cell-specific scoring.
The catalog includes VDAC1 antibodies with IHC images from human, mouse and rat tissues, plus IF images from HeLa cells and tissue sections (catalog: IHC/IF image captions).
A01168-1 shows IHC in human lymphadenoma and IF in HeLa cells (catalog: A01168-1 image captions); M01168 shows IHC in human liver cancer and mouse and rat heart (catalog: M01168 IHC captions); PA1780 shows IHC in human liver cancer and IF in HeLa cells (catalog: PA1780 image captions). PB9455 shows IHC in human intestinal cancer and mouse and rat cardiac muscle (catalog: PB9455 IHC captions); M01168-1 shows IHC in human, mouse and rat kidney (catalog: M01168-1 IHC captions).
Which to pick: For paraffin-section IHC, PB9455 has a human intestinal cancer example using EDTA retrieval at pH 8.0 and 1 μg/ml primary antibody (catalog: PB9455 IHC caption). For IF/ICC, A01168-1 has an IF image in HeLa cells at 5 μg/ml and a separate paraffin IHC example using EDTA retrieval at pH 8.0 (catalog: A01168-1 IF and IHC captions). For cross-species IHC, M01168 is a rabbit monoclonal with human, mouse and rat reactivity and paraffin IHC images using EDTA retrieval at pH 8.0; the fixative is unreported in these IHC captions (catalog: M01168 product record and IHC captions).