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- Table of Contents
Plan AKR1D1 paraffin IHC around cytoplasmic staining in liver hepatocytes (HPA tissue IHC). Start the IHC-validated antibody M05278 at 0.5–1 μg/mL and assess staining alongside controls (datasheet M05278).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Hepatocyte cytoplasm observed (HPA tissue IHC) | |
| Staining pattern | Selective, medium cytoplasmic staining in hepatocytes (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M05278) | |
| Positive control | Liver | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation conditions consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Presumed off-target staining was observed and disregarded (HPA tissue IHC) | |
| Regulation | Expression is liver enriched (UniProt) | |
| Isoform / epitope | 3 isoforms; confirm antibody epitope coverage (UniProt) |
The catalog antibody protocol uses EDTA pH 8.0 heat-mediated retrieval (datasheet M05278). The published options describe AKR1D1 staining in paraffin sections (PMC8417905; PMC7906155).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet M05278) |
| Fixation | Image fixative and duration unreported (datasheet M05278); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M05278); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M05278) |
| Primary antibody | Mouse monoclonal (clone 6I4) anti-AKR1D1, 0.5-1μg/ml (datasheet M05278) |
| Primary incubation | Overnight at 4 °C (datasheet M05278) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet M05278) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | AKR1D1-positive staining in hepatocytes of liver (HPA tissue IHC: Medium). HPA tissue profile: Selective cytoplasmic expression in liver. No signal in the no-primary control. |
AKR1D1 is cytoplasmic and has no transmembrane segment (UniProt P51857). In paraffin section IHC, expect selective cytoplasmic staining of liver hepatocytes, reported at medium intensity (HPA tissue IHC). HPA rates the tissue pattern Enhanced, while noting medium agreement with RNA data and presumed off target staining that was disregarded (HPA tissue IHC). Read unexpected staining against that qualification rather than treating every colored cell as AKR1D1.
| Hepatocytes show distinct cytoplasmic chromogen in liver. | This matches the selective liver pattern and medium hepatocyte staining reported by HPA (HPA tissue IHC), as well as cytoplasmic localization (UniProt P51857). Judge the cell pattern alongside the counterstain; staining intensity alone cannot establish specificity (general IHC practice). |
| Nuclear staining dominates the hepatocyte IHC signal, with little cytoplasmic staining. | This does not match the tissue IHC reference and may be artefactual (HPA tissue IHC; general IHC practice). HPA separately reports nucleoplasmic ICC/IF localization, so investigate the discrepancy before calling nuclear staining specific in a paraffin section (HPA subcellular ICC/IF). |
| Adipocytes or adrenal glandular cells stain as strongly as hepatocytes. | HPA reports AKR1D1 as undetected in those listed cells (HPA tissue IHC). Consider antibody cross-reactivity or endogenous detection activity, and compare with a no-primary control (general IHC practice). HPA's reliability note also acknowledges presumed off target staining (HPA tissue IHC). |
| Color spreads across tissue structures without a discernible hepatocyte cytoplasmic pattern. | Treat diffuse staining as background until controls clarify its source (general IHC practice). It cannot be scored as the selective hepatocyte result reported by HPA (HPA tissue IHC); check whether the same distribution appears without primary antibody (general IHC practice). |
| Liver hepatocytes show no signal despite an interpretable section and counterstain. | The expected positive tissue result is missing (HPA tissue IHC). Check assay controls and the catalog antibody's IHC-P instructions before interpreting this as absent AKR1D1; an unstained slide alone cannot distinguish assay failure from a biological negative (general IHC practice). |
| Tissue and cell context | HPA reports selective cytoplasmic expression in liver hepatocytes, with medium staining; its sampled adipocytes and adrenal glandular cells were undetected (HPA tissue IHC). UniProt also reports high liver expression, expression in testis, and weak expression in colon (UniProt P51857). Those expression statements do not establish an IHC intensity for testis or colon. |
| IHC evidence quality | The tissue profile is rated Enhanced, but HPA describes only medium consistency between antibody staining and RNA data and says presumed off target staining was disregarded (HPA tissue IHC). HPA057002 has Enhanced IHC validation (HPA antibodies). Use the reported cell pattern with controls when judging an individual slide (general IHC practice). |
| Compartment and topology | UniProt assigns AKR1D1 to the cytoplasm and reports no transmembrane segment or signal peptide (UniProt P51857). These annotations support a cytoplasmic interpretation; they do not identify an antibody epitope or predict what antigen retrieval will do in a paraffin section. |
| Isoforms and target processing | UniProt lists three isoforms, one chain spanning residues 1–326, and no annotated propeptide or glycosylation sites (UniProt P51857). The supplied records do not specify which isoforms the IHC antibody recognizes; do not infer isoform selectivity from a staining pattern. |
| IF/ICC Q&A: should nuclear signal count as the expected IHC result? | No automatic transfer of the reference pattern: HPA's ICC/IF summary places AKR1D1 mainly in the nucleoplasm, with additional cytosol, while its tissue IHC profile is selective cytoplasmic liver staining (HPA subcellular ICC/IF; HPA tissue IHC). HPA057002 is rated Uncertain for ICC (HPA antibodies). Interpret IF/ICC with its separate guide and validation. |
| Fixation sensitivity | Target-specific effects of fixation or antigen retrieval are unreported in the supplied UniProt and HPA records. Use the catalog antibody's IHC-P instructions for assay setup; do not infer that a changed signal proves AKR1D1 epitope masking or loss. |
| Situation | Likely cause | Next action |
|---|---|---|
| No hepatocyte staining in liver. | The observed result conflicts with HPA's medium hepatocyte staining reference (HPA tissue IHC); the assay step responsible is unknown. | Review the catalog antibody's IHC-P instructions, positive and no-primary controls, and whether detection worked on the run (general IHC practice). Do not assign a target-specific fixation cause from these sources. |
| Nuclei dominate a paraffin section. | The compartment conflicts with HPA tissue IHC, although HPA ICC/IF separately reports nucleoplasmic localization (HPA tissue IHC; HPA subcellular ICC/IF). | Recheck the cytoplasmic pattern, counterstain, and controls before assigning specificity (general IHC practice). Report the assay-dependent discrepancy if it persists; do not use the ICC/IF result alone to validate nuclear IHC. |
| Adipocytes or adrenal glandular cells stain prominently. | These sampled cell types are reported as undetected by HPA; cross-reactivity or endogenous detection activity is possible (HPA tissue IHC; general IHC practice). | Compare matched no-primary and detection controls; review blocking and the detection system as general IHC checks. Interpret remaining signal cautiously given HPA's note about disregarded presumed off target staining (HPA tissue IHC). |
| Diffuse color obscures cell boundaries. | Nonspecific background or detection activity may prevent a readable cellular pattern (general IHC practice). | Check a no-primary control and the catalog antibody's IHC-P detection conditions; reassess only when hepatocyte cytoplasm can be distinguished from background (general IHC practice; HPA tissue IHC). |
| Scattered nonhepatocyte signal appears in liver. | It falls outside HPA's selective hepatocyte tissue profile, but morphology alone does not identify its source (HPA tissue IHC; general IHC practice). | Record the cell distribution and compare it with no-primary controls and the hepatocyte signal (general IHC practice). Avoid scoring the scattered cells as AKR1D1 positive without supporting specificity evidence. |
| IF/ICC shows nucleoplasmic signal while IHC shows hepatocyte cytoplasm. | The two HPA assay summaries differ, and HPA057002 has Uncertain ICC validation (HPA subcellular ICC/IF; HPA tissue IHC; HPA antibodies). | Keep the paraffin section call tied to the tissue IHC reference; assess the IF/ICC observation under its own guide and controls (HPA tissue IHC; general IHC practice). Do not treat either assay's compartment as proof that the other assay failed. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Liver | Hepatocytes | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot AKR1D1 staining in paraffin sections using the catalog antibody’s IHC conditions, tissue controls and compartment-aware interpretation.
Both anti-AKR1D1 antibodies have human liver cancer paraffin-section IHC images (M05278 and A05278-2 IHC captions); A05278-2 also has U2OS cell IF data (A05278-2 IF caption). Catalog reactivity includes human, mouse and rat (catalog applications/reactivity).
M05278 has an IHC image from a human liver cancer paraffin section (M05278 IHC caption) and lists IHC reactivity with human, mouse and rat (catalog applications/reactivity). A05278-2 has its own human liver cancer paraffin-section IHC image and a U2OS cell IF image (A05278-2 IHC and IF captions); its catalog lists IHC, IF and ICC applications and human, mouse and rat reactivity (catalog applications/reactivity).
Which to pick: For paraffin-section IHC, choose either M05278, a mouse monoclonal clone 6I4, or A05278-2, a rabbit antibody; each has its own IHC image using 1 μg/ml primary antibody after EDTA pH 8.0 retrieval (catalog host/clone; M05278 and A05278-2 IHC captions). For IF/ICC, choose A05278-2: its catalog lists both applications and its U2OS cell IF image used 4 μg/ml; M05278 has no IF/ICC application listed (catalog applications; A05278-2 IF caption). Both list human, mouse and rat reactivity, while the supplied IHC images show human sections only; the fixative is unreported in both paraffin-section captions (catalog reactivity; M05278 and A05278-2 IHC captions).