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- Table of Contents
Plan ALDH1A3 IHC-P around cytoplasmic staining in prostate glandular cells (HPA tissue IHC). Start with the catalog antibody’s 2–5 μg/mL IHC range (datasheet A03030) and interpret staining in light of presumed off-target binding (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Cytoplasm in prostate glandular cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A03030) | |
| Positive control | Prostate+4 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Keep fixation consistent across paraffin sections (standard IHC practice; not target-specific) | |
| Caveat | Presumed off-target staining may confound interpretation (HPA tissue IHC) | |
| Regulation | Tissue-enhanced RNA in prostate and bladder (HPA RNA) | |
| Isoform / epitope | No annotated isoforms; mature chain spans residues 2–512 (UniProt) |
The catalog antibody’s IHC-P protocol is accompanied by published ALDH1A3 protocols for bladder tissue (PMC12215419) and paraffin tissue sections (PMC6769487).
| Sample | Paraffin-embedded human prostate cancer tissue; fixative not specified (datasheet A03030) |
| Fixation | Image fixative and duration unreported (datasheet A03030); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A03030); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03030) |
| Primary antibody | Rabbit anti-ALDH1A3, 2-5μg/ml (datasheet A03030) |
| Primary incubation | Overnight at 4 °C (datasheet A03030) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A03030) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ALDH1A3-positive staining in glandular cells of prostate (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in several different tissue types including prostate. No signal in the no-primary control. |
In paraffin section IHC, expect predominantly cytoplasmic ALDH1A3 staining, with high staining in prostate glandular cells and testis peritubular cells (HPA: tissue IHC; UniProt P47895: cytoplasm). ALDH1A3 has no transmembrane segment (UniProt P47895: topology). HPA rates its tissue IHC evidence Enhanced, while reporting medium agreement with RNA data and presumed off target staining that was disregarded (HPA: reliability).
| Distinct cytoplasmic staining in prostate glandular cells or testis peritubular cells, with interpretable tissue structure. | This matches the reported high tissue IHC pattern and UniProt cytoplasmic localization (HPA: prostate and testis tissue IHC; UniProt P47895: cytoplasm). Compare the stained cells with neighboring cells on the same section; tissue identity alone does not establish that the signal is specific (standard IHC practice). |
| Predominantly nuclear staining on a chromogenic paraffin section, with little convincing cytoplasmic signal. | Treat this as an IHC pattern requiring verification against controls: UniProt lists cytoplasm, and HPA describes tissue IHC as cytoplasmic (UniProt P47895: subcellular location; HPA: tissue IHC profile). HPA separately reports supported nucleoplasmic staining in ICC-IF, so a nuclear IF image cannot by itself validate nuclear IHC staining (HPA: subcellular ICC-IF). |
| Strong staining in a cell population HPA lists as not detected, or staining that ignores expected cell boundaries. | Investigate antibody cross-reactivity or detection-system activity before calling it ALDH1A3 (HPA: tissue IHC negative examples; standard IHC practice). HPA reports presumed off target binding in its tissue assessment, so its Enhanced rating is not a guarantee that every stained cell is positive (HPA: reliability). |
| Uniform brown haze across stroma, empty spaces, and cells, with no readable cytoplasmic pattern. | A diffuse signal cannot establish cell-specific expression (standard IHC practice). Check a no-primary control and inspect whether chromogen deposition, incomplete blocking, or detection-system background follows tissue compartments; use the control result to identify the source before changing the biological interpretation (standard IHC practice). |
| No signal in adequately preserved prostate glandular cells or testis peritubular cells. | A run-level sensitivity or reagent problem is plausible because HPA reports high staining in those cell populations (HPA: tissue IHC). Review antibody identity, section handling, retrieval conditions, dilution, detection reagents, and control performance as general IHC checks; the supplied sources give no ALDH1A3-specific retrieval or fixation effect (standard IHC practice). |
| Cell population used as a reference | HPA reports high staining in prostate glandular and testis peritubular cells, and medium staining in bronchial respiratory epithelium, endometrial stromal cells, gallbladder and stomach glandular cells, and bladder urothelial cells (HPA: tissue IHC). Judge a section by its reported cell population, not by a whole-tissue label (standard IHC practice). |
| Negative and low-staining comparators | HPA lists adrenal glandular cells, heart cardiomyocytes, and lymph-node germinal-center cells as not detected; it lists lung alveolar cells and thyroid glandular cells as low (HPA: tissue IHC). A negative comparator can reveal nonspecific staining, but a low-staining sample is a weak sensitivity check (standard IHC practice). |
| Strength and limits of IHC evidence | The HPA046271 antibody has Enhanced IHC validation, whereas the supplied HPA record gives no IHC status for HPA064749 (HPA: antibody validation). HPA also reports medium agreement between staining and RNA data and disregarded presumed off target binding; interpret unexpected patterns with controls (HPA: reliability; standard IHC practice). |
| Protein localization and processing | UniProt places ALDH1A3 in the cytoplasm, reports no transmembrane segment or signal peptide, and lists a 2–512 chain with no annotated isoforms (UniProt P47895: subcellular location, topology, processing, isoforms). These annotations support a cellular cytoplasmic expectation but do not identify the antibody epitope or establish antigen-retrieval requirements (UniProt P47895; standard IHC practice). |
| IF/ICC: What pattern should be expected? | HPA reports supported nucleoplasmic localization with additional cytosolic signal in ICC-IF images from A-431, U-251MG, U2OS, and PC-3 cells (HPA: subcellular ICC-IF). This assay-specific observation differs from the cytoplasmic tissue IHC profile; evaluate IF/ICC localization on its own guide page (HPA: tissue IHC and subcellular ICC-IF). |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected positive cells are blank. | The run may lack sufficient signal, or the intended positive cell population may be absent from the examined area (HPA: tissue IHC; standard IHC practice). | Locate prostate glandular cells or testis peritubular cells in the section; then check antibody identity, dilution, retrieval setup, detector, and a concurrent positive control (HPA: tissue IHC; standard IHC practice). No target-specific retrieval condition is supplied. |
| Nuclei dominate the IHC signal. | The paraffin section pattern conflicts with HPA cytoplasmic tissue IHC and UniProt cytoplasmic localization; the cause cannot be assigned from appearance alone (HPA: tissue IHC; UniProt P47895: cytoplasm). | Compare a no-primary control and an expected positive tissue, and check whether staining remains in the reported cytoplasmic cell population (HPA: tissue IHC; standard IHC practice). |
| Cells expected to be negative stain strongly. | Cross-reactivity or detection background is possible; HPA's tissue review explicitly notes presumed off target binding (HPA: reliability; standard IHC practice). | Check the cell identity and compare the same run with a no-primary control and HPA-listed negative cell populations before scoring those cells as ALDH1A3-positive (HPA: tissue IHC; standard IHC practice). |
| Brown staining is widespread and poorly cell-defined. | Nonspecific reagent binding or endogenous chromogenic detection activity may contribute, depending on the detection chemistry used (standard IHC practice). | Review blocking and wash steps, inspect a no-primary control, and address endogenous activity appropriate to the chosen detection system; reassess only cell-defined signal afterward (standard IHC practice). |
| Only faint signal appears in a low-staining tissue. | HPA already reports low staining in some populations, including lung alveolar cells and thyroid glandular cells (HPA: tissue IHC). | Check a concurrently stained HPA high positive cell population before changing assay conditions; score weak tissue signal only when its cellular location and controls are interpretable (HPA: tissue IHC; standard IHC practice). |
| A retrieval change gives an unexpected result. | The supplied HPA and UniProt records do not establish ALDH1A3-specific retrieval or fixation sensitivity (HPA: supplied tissue IHC record; UniProt P47895). | Compare retrieval conditions using the same positive and negative controls, keeping detection and scoring consistent; treat any improvement as an assay observation, not a documented ALDH1A3 property (standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Prostate | Glandular cells | High | Protein (IHC) | HPA → |
| Testis | Peritubular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | Medium | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | Not detected | Protein (IHC) | HPA → |
Use the documented paraffin-section workflow as the starting point, then judge staining by cell type, compartment, and controls.
A03030 has IHC data from paraffin sections of human prostate cancer and rat lung (IHC image captions), plus IF/ICC data from SiHa cells (IF image caption).
A03030 will render with IHC evidence from paraffin sections of human prostate cancer and rat lung (IHC image captions). It also has IF/ICC evidence from SiHa cells (IF image caption) and lists human, mouse, and rat reactivity (catalog reactivity).
Which to pick: For tissue IHC, choose A03030: its images document paraffin sections with EDTA retrieval at pH 8.0 and 2 μg/mL primary antibody; the fixative is unreported (A03030 IHC image captions). For IF/ICC, choose A03030: its SiHa-cell IF image uses 5 μg/mL, and the catalog lists both applications (A03030 IF image caption; catalog applications). For cross-species work, A03030 lists human, mouse, and rat reactivity (catalog reactivity), with IHC images for human and rat (A03030 IHC image captions).