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- Table of Contents
Plan ANXA2 staining in paraffin sections using esophageal squamous cells and lung macrophages as positive references (HPA tissue IHC). This guide covers fixation consistency, chromogenic detection, and interpretation of membranous and extracellular staining (HPA tissue IHC), with a catalog antibody IHC range of 2–5 μg/ml (datasheet: PA1348).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Membranous and extracellular tissue staining (HPA tissue IHC) | |
| Staining pattern | Epithelial cells and macrophages; membranous/extracellular (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PA1348) | |
| Positive control | Bronchus+4 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific) | |
| Caveat | Secreted variants may separate RNA and protein locations (HPA tissue IHC) | |
| Regulation | No expression regulator annotated (UniProt) | |
| Isoform / epitope | Two isoforms; variant-specific epitope coverage unknown (UniProt) |
The catalog antibody uses EDTA pH 8.0 heat retrieval (datasheet PA1348). Published IHC protocols cover parathyroid adenoma and endometrium (PMC11279064; PMC6694070).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet PA1348) |
| Fixation | Image fixative and duration unreported (datasheet PA1348); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PA1348); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PA1348) |
| Primary antibody | Rabbit anti-ANXA2, 2-5μg/ml (datasheet PA1348) |
| Primary incubation | Overnight at 4 °C (datasheet PA1348) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet PA1348) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ANXA2-positive staining in respiratory epithelial cells of bronchus (HPA tissue IHC: High). HPA tissue profile: Ubiquitous membranous and extracellular expression. No signal in the no-primary control. |
In paraffin section IHC, expect predominantly membranous and extracellular ANXA2 staining (HPA tissue IHC: ubiquitous membranous and extracellular expression). Strong examples include esophageal squamous epithelium, bronchial respiratory epithelium, liver cholangiocytes and lung macrophages (HPA tissue IHC: High). ANXA2 also occurs at the cell surface, extracellular matrix and basement membrane; it has no transmembrane segment (UniProt P07355: subcellular location and topology). HPA rates the tissue staining evidence Enhanced (HPA tissue IHC: reliability).
| Strong cell borders or extracellular staining in esophageal squamous cells, with interpretable counterstain. | This fits a known high staining cell population and the reported membranous and extracellular profile (HPA tissue IHC: Esophagus High; profile). Compare neighboring cells before calling the entire section uniformly positive (standard IHC interpretation). |
| Predominantly nuclear staining, with little membranous or extracellular signal. | This is discordant with the reported tissue profile and approved IF locations; investigate nonspecific detection before scoring it as ANXA2 (HPA tissue IHC: profile; HPA ICC-IF: plasma membrane and cytosol). |
| Strong staining in adrenal glandular cells while an on-slide known-positive population stains as expected. | HPA reports adrenal glandular cells as Not detected; assess antibody cross-reactivity or endogenous chromogen-generating activity (HPA tissue IHC: adrenal glandular cells Not detected; standard IHC practice). |
| Diffuse chromogen covers tissue and blank regions, obscuring cell borders. | The distribution cannot be scored against ANXA2's reported membranous and extracellular pattern (HPA tissue IHC: profile). Check blocking, washes and detection controls for nonspecific background (standard IHC practice). |
| No signal in esophageal squamous epithelium or bronchial respiratory epithelium. | Both are reported High, so first suspect an assay failure, while recognizing that individual sections and antibody performance require controls (HPA tissue IHC: Esophagus and Bronchus High; standard IHC practice). |
| Compartment and topology | ANXA2 has no transmembrane segment despite cell surface localization; a membrane-associated outline is plausible without implying integral membrane insertion (UniProt P07355: topology and subcellular location). Extracellular matrix and basement membrane localization can also contribute staining (UniProt P07355: subcellular location). |
| Cell-specific reference levels | HPA reports High staining in liver cholangiocytes and lung macrophages, Low staining in salivary glandular cells, and Not detected in skeletal myocytes (HPA tissue IHC: cell-specific levels). Judge the annotated cell population, not the organ name alone (standard IHC interpretation). |
| Protein versus RNA | HPA calls RNA tissue enhanced in esophagus but protein staining ubiquitous, and cautions that a secreted variant complicates RNA–protein correlation (HPA tissue IHC: RNA specificity, profile and reliability description). RNA abundance alone should not determine IHC scoring (standard IHC interpretation). |
| Antibody evidence | Three listed antibodies have Enhanced IHC status; this supports the reported tissue pattern but does not validate every reagent or staining condition (HPA antibodies: HPA046964, HPA061798 and CAB004311 IHC Enhanced). Check the antibody actually used against its own controls (standard IHC practice). |
| Isoforms and processing | UniProt lists two isoforms and an ANXA2 chain spanning residues 2–339, but the payload gives no antibody epitope (UniProt P07355: isoforms and processing). Do not assign compartment differences to isoform recognition or processing from this evidence alone. |
| IF/ICC Q&A: Where should ANXA2 appear? | Mainly at the plasma membrane, with additional cytosolic signal in the HPA IF record (HPA ICC-IF: approved locations). This answers the localization question only; paraffin section IHC staining is described by the tissue profile (HPA tissue IHC: profile). |
| Situation | Likely cause | Next action |
|---|---|---|
| Known-positive esophageal epithelium has no visible chromogen. | A failed staining or detection step is plausible when an HPA High population is blank (HPA tissue IHC: Esophagus High; standard IHC practice). | Review the catalog antibody's IHC-P instructions, reagent controls and chromogen development; repeat with a known-positive section (standard IHC practice). |
| An adrenal glandular cell population stains strongly. | That population is reported Not detected; cross-reactivity or endogenous detection activity is possible (HPA tissue IHC: adrenal glandular cells Not detected; standard IHC practice). | Compare a no-primary control and the expected positive population; address endogenous detection activity if the control also stains (standard IHC practice). |
| Most nuclei stain while membrane outlines remain faint. | Nuclear dominance conflicts with reported membranous tissue expression and approved plasma membrane IF localization (HPA tissue IHC: profile; HPA ICC-IF: main location). | Check primary antibody specificity and no-primary background, then score only staining with a supported cellular distribution (standard IHC practice). |
| Extracellular color is widespread and hard to assign to cells. | Extracellular ANXA2 is plausible, but diffuse background can obscure its distribution (UniProt P07355: extracellular matrix; HPA tissue IHC: profile; standard IHC practice). | Compare tissue structure and a no-primary control; adjust blocking and washing only if background impairs interpretation (standard IHC practice). |
| A salivary glandular population looks much weaker than esophageal epithelium. | The reported levels differ: Low in salivary glandular cells and High in esophageal squamous cells (HPA tissue IHC: cell-specific levels). | Score each annotated population against its own reference level; retain a known-positive control to judge assay performance (HPA tissue IHC: levels; standard IHC practice). |
| Strong staining appears in an HPA Not detected cell population but the positive control works. | HPA annotations are cell-specific and its reliability note flags staining in unannotated cells or structures; the signal needs review (HPA tissue IHC: negative list and reliability description). | Inspect morphology and HPA reference images, then compare an independent IHC-validated antibody if the assignment matters (HPA tissue IHC: reliability description; HPA antibodies: three Enhanced IHC entries). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex. Antibody staining in cells/structures not annotated, view images.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Cervix | Glandular cells | High | Protein (IHC) | HPA → |
| Endometrium | Glandular cells | High | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
Use compartment, cell type and slide controls together when troubleshooting ANXA2 staining in paraffin sections (HPA tissue IHC; HPA subcellular).
The anti-ANXA2 IHC image shows a human paraffin-embedded liver cancer section (PA1348 image caption). Catalog reactivity includes Human, Mouse and Rat (PA1348 catalog).
PA1348 is the only rendered card; its image shows chromogenic IHC in a paraffin-embedded human liver cancer section (PA1348 image caption). PA1348 lists Human, Mouse and Rat reactivity, while its supplied image documents human tissue only (PA1348 catalog; PA1348 image caption).
Which to pick: Choose PA1348 for tissue IHC: its own caption documents EDTA retrieval at pH 8.0, 2 μg/ml primary antibody and HRP/DAB detection in a paraffin-embedded human liver cancer section; the fixative is unreported (PA1348 image caption). For IF/ICC, M00868 lists those applications and is a rabbit monoclonal, although no IF image is supplied (M00868 catalog). For cross-species work, both list Human, Mouse and Rat reactivity, but the supplied IHC image supports human tissue only (PA1348 catalog; M00868 catalog; PA1348 image caption).