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- Table of Contents
Plan ANXA3 paraffin-section IHC around variable cytoplasmic staining and strongly stained endocrine cells in the appendix and duodenum (HPA tissue IHC). Use those cell populations as positive references and titrate the IHC-validated antibody at 0.5–1 μg/ml (datasheet A04796).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Variable cytoplasmic staining in most tissues (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining varies; endocrine cells can stain strongly (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A04796) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A04796) | |
| Caveat | Cell-specific staining may be missed when scoring whole sections (HPA tissue IHC) | |
| Regulation | Expression regulation unreported (UniProt) | |
| Isoform / epitope | No annotated isoforms; mature chain spans residues 2–323 (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A04796) is accompanied by published ANXA3 staining protocols for colon carcinoma (PMC9273664) and interspinous ligament (PMC9019158).
| Sample | Paraffin-embedded human intestinal cancer tissue; fixative not specified (datasheet A04796) |
| Fixation | Image fixative and duration unreported (datasheet A04796); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A04796) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A04796) |
| Primary antibody | Rabbit anti-ANXA3, 0.5-1μg/ml (datasheet A04796) |
| Primary incubation | Overnight at 4 °C (datasheet A04796) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A04796) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ANXA3-positive staining in endocrine cells of appendix (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression at variable levels in most tissues. No signal in the no-primary control. |
For paraffin-section IHC, expect ANXA3 staining in the cytoplasm at variable levels across tissues (HPA: tissue IHC profile; Enhanced reliability, with medium consistency against RNA data). High staining is reported in appendix and duodenum endocrine cells, kidney Bowman’s capsule, and lung alveolar type I cells (HPA: tissue IHC). ANXA3 has no annotated transmembrane segment (UniProt P12429: topology).
| Distinct cytoplasmic staining in appendix or duodenum endocrine cells, kidney Bowman’s capsule, or lung alveolar type I cells. | This matches the reported compartment and high-staining cell populations (HPA: tissue IHC). Judge each cell population separately: HPA describes variable expression across most tissues, so adjacent cells need not have equal signal (HPA: tissue IHC profile). |
| Predominantly nuclear staining in a paraffin section, with little cytoplasmic signal in the expected cells. | The compartment disagrees with HPA’s cytoplasmic tissue-IHC profile (HPA: tissue IHC). Treat it as suspect and check controls and detection conditions before scoring it as ANXA3. Plasma-membrane localization reported by ICC-IF does not establish a nuclear IHC pattern (HPA: subcellular ICC-IF). |
| Strong staining in a cell population reported as not detected, such as adrenal glandular cells or cardiomyocytes. | That result conflicts with the specified HPA observations (HPA: adrenal glandular cells and cardiomyocytes, Not detected). Assess cross-reactivity and endogenous chromogenic activity with appropriate controls (general IHC practice). A single discordant section does not establish true ANXA3 expression. |
| Diffuse color covers tissue structures or appears outside recognizable cells. | The distribution cannot be assigned confidently to ANXA3-positive cells. Check a no-primary control for detection background and review blocking, washing, and chromogen development (general IHC practice). HPA’s reported pattern is cellular and cytoplasmic in tissue IHC (HPA: tissue IHC profile). |
| No signal in an adequately sampled appendix or duodenum endocrine-cell population. | These are reported high-staining populations (HPA: appendix and duodenum endocrine cells, High). A blank result prompts review of tissue identity, antigen retrieval, antibody dilution, and detection controls (general IHC practice); it does not alone prove biological absence. |
| Cell population and tissue | HPA reports High staining in four specified populations, Medium in bone marrow hematopoietic and several epithelial populations, and Not detected in selected cells (HPA: tissue IHC). Compare like cell populations rather than scoring the whole section uniformly. |
| Assay-specific compartment | Tissue IHC is described as cytoplasmic, while ICC-IF is mainly plasma-membrane localized with supported status (HPA: tissue IHC; HPA: subcellular ICC-IF). Use the pattern for the assay being interpreted; these observations do not establish an IF staining protocol. |
| Antibody validation | Both HPA013398 and HPA013431 have Enhanced IHC status (HPA: antibody validation). The tissue profile also carries an Enhanced reliability label with medium consistency against RNA data (HPA: tissue IHC); neither label guarantees every specimen will match. |
| Protein annotation | UniProt annotates no transmembrane segment, signal peptide, propeptide, or isoforms for ANXA3 (UniProt P12429: topology and processing). Those annotations do not resolve the IHC-versus-ICC-IF localization difference or specify antigen retrieval conditions. |
| Fixation sensitivity | Target-specific effects of fixation on ANXA3 staining are unreported in the supplied UniProt and HPA records. Optimize fixation and antigen retrieval as general IHC workflow variables, without treating either source as evidence for an ANXA3-specific effect. |
| Situation | Likely cause | Next action |
|---|---|---|
| The expected positive cells show no chromogenic signal. | The result conflicts with HPA’s High observations in appendix or duodenum endocrine cells, kidney Bowman’s capsule, and lung alveolar type I cells (HPA: tissue IHC); the failing step is undetermined. | Confirm the sampled cell population and run a known-positive section; review retrieval, catalog-antibody dilution, detection reagents, and chromogen development (general IHC practice). Do not infer an ANXA3-specific fixation effect from HPA. |
| A no-primary control develops widespread color. | The control points to background from the detection workflow rather than primary-antibody binding (general IHC practice). It cannot establish whether ANXA3 is present in the test section. | Review endogenous activity blocking appropriate to the chromogen system, secondary-reagent specificity, washing, and development time; repeat the control alongside the test section (general IHC practice). |
| Signal appears strong in adrenal glandular cells or cardiomyocytes. | Those populations are reported as Not detected (HPA: tissue IHC). Cross-reactivity or endogenous detection activity is possible, although a discordant stain alone cannot identify its cause. | Compare with a no-primary control and an expected positive population; inspect whether color follows cells or accumulates nonspecifically (general IHC practice). Record the discordance rather than assigning ANXA3 positivity immediately. |
| Most staining is nuclear or obscures cell boundaries. | A predominantly nuclear pattern differs from HPA’s cytoplasmic tissue-IHC profile (HPA: tissue IHC). Excess background or poor compartment resolution may prevent reliable scoring (general IHC practice). | Check counterstain contrast and no-primary background; review antibody concentration, washing, and chromogen development before interpreting localization (general IHC practice). |
| A weakly stained tissue seems inconsistent with bone-marrow RNA enrichment. | HPA calls ANXA3 RNA tissue enhanced in bone marrow but reports Medium staining in bone-marrow hematopoietic cells (HPA: tissue IHC and RNA specificity). RNA enrichment does not specify IHC staining intensity. | Score the hematopoietic cells against the reported Medium IHC observation and include a reported High-staining population as a process control (HPA: tissue IHC; general IHC practice). |
| IF/ICC Q: Is plasma-membrane signal compatible with ANXA3? | A: HPA reports mainly plasma-membrane localization in ICC-IF, with supported status (HPA: subcellular ICC-IF), while paraffin tissue IHC is described as cytoplasmic (HPA: tissue IHC). | Interpret each result using its assay-specific HPA observation. Consult the separate IF/ICC guide for that assay’s workflow; the tissue-IHC pattern does not supply an IF/ICC protocol. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Endocrine cells | High | Protein (IHC) | HPA → |
| Duodenum | Endocrine cells | High | Protein (IHC) | HPA → |
| Kidney | Bowman's capsule | High | Protein (IHC) | HPA → |
| Lung | Alveolar cells type I | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
These questions focus on interpreting ANXA3 staining in paraffin sections using chromogenic IHC, with one entry for IF/ICC planning.
ANXA3 antibodies have IHC images from paraffin sections of human intestinal cancer, placenta and mouse kidney (catalog image captions); IF/ICC is listed for PB9420, with no IF image supplied (catalog applications and images).
A04796 will render with IHC data from human intestinal cancer; its additional IHC images show human lung and mammary cancers and mouse kidney (A04796 image captions). M04796-2 will render with IHC data from human placenta; its additional images show human colon adenocarcinoma and thyroid cancer (M04796-2 image captions).
Which to pick: For paraffin section IHC across species, choose rabbit A04796: human and mouse staining is shown, and rat reactivity is listed (A04796 image captions; catalog reactivity). For human paraffin section IHC using a monoclonal antibody, choose mouse clone 2H3H8, M04796-2 (M04796-2 catalog clone and image captions). For IF/ICC, consider PB9420 at 5 μg/ml, while recognizing that IF/ICC is listed without an IF image; the fixative is unreported in the paraffin section captions for all three SKUs (PB9420 catalog applications and dilution; catalog image captions).