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- Table of Contents
BCAP31 shows ubiquitous cytoplasmic tissue staining, with high signal in Bergmann glia and lung macrophages (HPA tissue IHC). This guide covers fixation, antigen retrieval, controls and scoring for chromogenic IHC on paraffin sections.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic (HPA tissue IHC); ER membrane (UniProt) | |
| Staining pattern | High cytoplasmic staining in Bergmann glia and lung macrophages (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A03767-4) | |
| Positive control | Cerebellum+4 more · see all | |
| Negative control | Heart muscle+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Presumed off-target binding may confound scoring (HPA tissue IHC) | |
| Regulation | ER stress redistributes BCAP31 (UniProt) | |
| Isoform / epitope | 2 isoforms; epitope differences are unspecified (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet A03767-4) with 2 published BCAP31 IHC protocols (PMC11683684; PMC7055246).
| Sample | Paraffin-embedded human colon cancer tissue; fixative not specified (datasheet A03767-4) |
| Fixation | Image fixative and duration unreported (datasheet A03767-4); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A03767-4); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03767-4) |
| Primary antibody | Rabbit anti-BCAP31, 2-5 μg/ml (datasheet A03767-4) |
| Primary incubation | Overnight at 4 °C (datasheet A03767-4) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A03767-4) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | BCAP31-positive staining in bergmann glia - cytoplasm/membrane of cerebellum (HPA tissue IHC: High). HPA tissue profile: Ubiquitous cytoplasmic expression. No signal in the no-primary control. |
BCAP31 is an endoplasmic reticulum (ER) membrane protein with three transmembrane segments (UniProt P51572 topology). In paraffin-section IHC, expect predominantly cytoplasmic staining, with stronger signal in cerebellar Bergmann glia and lung macrophages (HPA: ubiquitous cytoplasmic expression; High in both cell types). Use these as reference patterns with care: tissue IHC reliability is Supported, with medium consistency between staining and RNA data and presumed off-target binding disregarded (HPA: tissue IHC reliability).
| Cytoplasmic signal is strongest in Bergmann glia or lung macrophages. | This matches the reported High staining in those cells (HPA: cerebellum and lung IHC). ER-associated cytoplasmic staining is biologically plausible for a three-pass ER membrane protein (UniProt P51572 topology). Score the relevant cells within each tissue; a positive field alone does not establish which cell population stained. |
| Signal appears predominantly nuclear or outlines the plasma membrane. | Treat that compartment pattern as suspect: BCAP31 is assigned to the ER and ER–Golgi intermediate compartment membranes (UniProt P51572 subcellular location), and HPA reports cytoplasmic tissue staining (HPA: tissue IHC profile). Recheck morphology, counterstain and detection controls before interpreting the signal as BCAP31. |
| Strong staining appears in cardiomyocytes, skeletal myocytes or oral squamous cells. | Those cells are reported as Not detected (HPA: heart muscle, skeletal muscle and oral mucosa IHC). Strong signal there raises concern for off-target staining or endogenous detection activity (general IHC practice). It is a warning rather than proof of cross-reactivity, especially given the Supported reliability and disregarded presumed off-target binding (HPA: tissue IHC reliability). |
| Color is spread across the section without discernible cellular boundaries. | A uniform deposit cannot establish the reported cytoplasmic, cell-resolved pattern (HPA: tissue IHC profile). Consider nonspecific background or endogenous detection activity (general IHC practice). Compare a no-primary control and inspect whether the signal remains tied to recognizable cell cytoplasm before assigning a staining level. |
| Bergmann glia or lung macrophages show no detectable signal. | Both are High reference populations (HPA: cerebellum and lung IHC), so absence warrants a technical check before calling the specimen negative. Confirm that the expected cells are present, then review the IHC-validated antibody, retrieval, dilution and detection steps (general IHC practice). These checks do not establish BCAP31-specific fixation sensitivity. |
| Reference-cell choice | Bergmann glia and lung macrophages are High, whereas cardiomyocytes and skeletal myocytes are Not detected (HPA: tissue IHC). Compare identified cell populations rather than whole-section color. HPA also reports ubiquitous cytoplasmic expression, so weak signal elsewhere is not automatically abnormal (HPA: tissue IHC profile). |
| Compartment and epitope location | BCAP31 has three membrane-spanning segments, short lumenal regions and a cytoplasmic region spanning residues 124–246 (UniProt P51572 topology). If an antibody epitope is known, its location can guide interpretation of access after retrieval or permeabilisation (general IHC practice); the supplied record does not identify an epitope or a target-specific retrieval response. |
| Validation strength | Three listed antibodies have Supported IHC status: HPA003906, CAB015350 and CAB015424 (HPA: antibody validation). The tissue profile also has Supported reliability with medium staining–RNA consistency and presumed off-target binding disregarded (HPA: tissue IHC reliability). Resolve an unexpected pattern with controls and morphology rather than treating validation status as absolute specificity. |
| Expression breadth | UniProt describes BCAP31 as ubiquitous and highly expressed in neurons and discrete endocrine cells (UniProt P51572 tissue specificity). HPA reports low tissue specificity and a range from High to Not detected across named cell populations (HPA: tissue IHC). Interpret intensity in the identified cell type; neither source supplies a universal positive cutoff. |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in a section containing Bergmann glia or lung macrophages. | The result conflicts with High staining reported for those populations (HPA: cerebellum and lung IHC); the cause cannot be identified from pattern alone. | Verify cell identity and section quality, then check the antibody's IHC validation, retrieval, dilution and detection controls (general IHC practice). Do not infer a BCAP31 fixation effect from the HPA staining levels. |
| Strong signal persists in cardiomyocytes or skeletal myocytes. | These populations are Not detected in the tissue profile (HPA: heart muscle and skeletal muscle IHC). Off-target binding or endogenous detection activity is possible (general IHC practice). | Run a no-primary control, inspect cell boundaries and compare with a High reference population (general IHC practice; HPA: lung macrophages and Bergmann glia). Avoid scoring the unexpected signal as confirmed BCAP31. |
| The stain is mostly nuclear or traces cell surfaces. | That distribution conflicts with the reported cytoplasmic tissue pattern and ER localization (HPA: tissue IHC profile; UniProt P51572 subcellular location). | Check counterstain and morphology, then review primary-antibody specificity and detection controls (general IHC practice). Reassess the result in a known High cell population (HPA: lung macrophages or Bergmann glia). |
| Diffuse color obscures differences among cells. | Background deposition can hide a cell-resolved cytoplasmic pattern (general IHC practice; HPA: tissue IHC profile). | Inspect a no-primary control and review blocking, washing and detection conditions (general IHC practice). Score only identifiable cellular signal; HPA's Supported reliability does not validate an obscured section (HPA: tissue IHC reliability). |
| A weak cell population is called negative beside a strong one. | HPA reports Medium staining in several named populations and Low staining in others, alongside High reference populations (HPA: tissue IHC). A single section-wide threshold may conceal that range. | Identify and score each relevant cell population separately, using matched staining conditions and the HPA cell-level categories as context (general IHC practice; HPA: tissue IHC). |
| Q: What should IF/ICC show? | HPA localizes BCAP31 to the ER by ICC-IF, consistent with UniProt's ER membrane assignment (HPA: subcellular ICC-IF; UniProt P51572 subcellular location). | A: Interpret an ER-associated intracellular pattern as consistent with those sources; use the separate IF/ICC guide for experimental setup (HPA: subcellular ICC-IF). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebellum | Bergmann glia - cytoplasm/membrane | High | Protein (IHC) | HPA → |
| Lung | Macrophages | High | Protein (IHC) | HPA → |
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Oral mucosa | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Skeletal muscle | Myocytes | Not detected | Protein (IHC) | HPA → |
| Soft tissue | Peripheral nerve | Not detected | Protein (IHC) | HPA → |
| Vagina | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot BCAP31 staining in paraffin sections by checking retrieval, compartment pattern, controls and scoring before interpreting differences between samples.
The catalog includes BCAP31 antibodies with IHC images from human colon cancer, rat lung and human brain sections (catalog image captions), plus IF images from human tissue and A549 cells (A03767-4 IF captions).
A03767-4 shows IHC in human colon cancer sections and IF in A549 cells and human tissue (A03767-4 image captions). A03767 shows IHC in rat lung, while M03767 shows IHC in human brain sections (A03767 and M03767 image captions).
Which to pick: For human paraffin-section IHC, choose A03767-4 at 2–5 μg/ml (datasheet: IHC dilution; A03767-4 IHC caption: human colon cancer); its IHC caption does not report the fixative (A03767-4 IHC caption). For IF/ICC, choose A03767-4 at 5 μg/ml (datasheet: IF/ICC application and dilution; A03767-4 IF captions: A549 cells and human tissue). For rat tissue IHC, A03767 has a rat lung example at 2 μg/mL (A03767 IHC caption); it lists human, mouse and rat reactivity, but its IHC validation is in rat samples (A03767 catalog reactivity and validation).