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- Table of Contents
Plan CAMKK2 paraffin IHC with cortical neurons as a high-staining reference (HPA tissue IHC). This guide covers fixation consistency, cytoplasmic scoring (HPA tissue IHC), and the catalog antibody’s 2–5 μg/ml IHC range (datasheet A03048).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Predominantly cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | General cytoplasmic staining; high in cortical neurons (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A03048) | |
| Positive control | Cerebral cortex+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation conditions consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Low consistency between antibody staining and RNA (HPA tissue IHC) | |
| Regulation | Higher expression in brain (UniProt) | |
| Isoform / epitope | 7 isoforms; 4–6 lack part of the calmodulin-binding domain (UniProt) |
The catalog antibody uses heat-mediated EDTA pH 8.0 retrieval (datasheet A03048). The two published CAMKK2 IHC protocols use citrate pH 6.0 retrieval (PMC10472110; PMC6547743).
| Sample | Paraffin-embedded human colorectal adenocarcinoma tissue; fixative not specified (datasheet A03048) |
| Fixation | Image fixative and duration unreported (datasheet A03048); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A03048); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03048) |
| Primary antibody | Rabbit anti-CAMKK2, 2-5 μg/ml (datasheet A03048) |
| Primary incubation | Overnight at 4 °C (datasheet A03048) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A03048) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CAMKK2-positive staining in neuronal cells of cerebral cortex (HPA tissue IHC: High). HPA tissue profile: General cytoplasmic expression. No signal in the no-primary control. |
In paraffin-section IHC, expect mainly cytoplasmic CAMKK2 staining in cerebral cortical neurons and selected squamous epithelial and glandular cells (HPA: general cytoplasmic expression; High in these cell types). CAMKK2 has no transmembrane segment (UniProt Q96RR4 topology). Interpret intensity cautiously: HPA rates tissue IHC Approved but reports low consistency between staining and RNA expression (HPA: reliability summary).
| Cytoplasmic staining in cerebral cortical neurons. | This fits a strong positive tissue pattern (HPA: High in cerebral cortex neuronal cells; general cytoplasmic expression). Judge the relevant cells, rather than the section as a whole. |
| Predominantly sharp membrane or extracellular staining. | This conflicts with the expected intracellular pattern (HPA: general cytoplasmic expression; UniProt Q96RR4: no transmembrane segment). Review morphology, controls and detection background before scoring it as CAMKK2. |
| Strong staining in adipocytes or skeletal myocytes. | These cell types are listed as Not detected (HPA: adipose tissue adipocytes; skeletal muscle myocytes). Investigate cross-reactivity or endogenous detection activity; an isolated signal there is weak evidence of CAMKK2. |
| Uniform color across cells and cell-free areas. | A pattern that ignores cell boundaries suggests diffuse assay background (general IHC practice). Compare the no-primary control and inspect blocking, washing and chromogen development before interpreting cell-specific staining. |
| No staining in a cerebral cortex positive control. | The result conflicts with the reported High neuronal staining (HPA: cerebral cortex). Check tissue preservation, retrieval, antibody dilution and detection with suitable controls (general IHC practice); do not infer CAMKK2 absence from this slide alone. |
| Positive and negative tissue choice | Cerebral cortex neurons, prostate glandular cells and esophageal squamous cells are High; adipocytes and skeletal myocytes are Not detected (HPA: tissue IHC). Use the named cell populations when comparing sections. |
| Localization and cell state | HPA describes general cytoplasmic tissue staining (HPA: tissue IHC). UniProt reports predominantly nuclear CAMKK2 in unstimulated cells and movement into cytoplasm and neurites after forskolin induction (UniProt Q96RR4: subcellular location). Context matters when assessing nuclear signal. |
| Antibody evidence and isoforms | Two listed antibodies have Approved IHC status, while HPA reports low staining–RNA consistency (HPA: antibody validation and reliability summary). UniProt lists seven isoforms (UniProt Q96RR4: isoforms); the payload gives no epitope map or isoform coverage for the catalog antibody. |
| IF/ICC Q&A | Q: What localization is reported for IF/ICC? A: Cytosol is the supported main location; HPA017389 has Supported ICC status (HPA: subcellular ICC-IF and antibody validation). This is context for the separate IF/ICC guide, not an IHC protocol option. |
| Situation | Likely cause | Next action |
|---|---|---|
| Weak staining in cerebral cortex neurons | The expected population is High (HPA: cerebral cortex neuronal cells); the assay may have insufficient detectable signal. | Check the positive control, then review retrieval, antibody dilution and detection conditions (general IHC practice). No CAMKK2-specific retrieval setting is supplied. |
| No stain in both test and positive-control sections | A shared processing or detection failure is possible (general IHC practice); cortex neurons should stain strongly (HPA: High). | Verify section integrity and each staining step with appropriate controls before calling the test tissue negative (general IHC practice). |
| Strong color in HPA Not detected cells | Adipocytes and skeletal myocytes are Not detected in the HPA tissue profile (HPA: tissue IHC). Cross-reactivity or endogenous detection activity may explain color. | Compare a no-primary control and an appropriate positive tissue; review blocking and detection reagents (general IHC practice). |
| Diffuse stain obscures cell boundaries | Excess detection background can prevent cellular scoring (general IHC practice). | Compare the no-primary control; review washing, antibody concentration and chromogen development (general IHC practice). Score only distinguishable cellular staining. |
| Prominent nuclear stain with little cytoplasmic stain | UniProt reports nuclear predominance in unstimulated cells, whereas HPA summarizes tissue IHC as generally cytoplasmic (UniProt Q96RR4: location; HPA: tissue profile). | Record the compartment and specimen context; compare HPA positive cells and controls before accepting a nuclear-only tissue pattern. |
| Unexpected difference between two positive tissues | HPA reports High staining in several cell types but low consistency with RNA expression (HPA: tissue levels and reliability summary). Tissue-wide intensity may also hide cell-specific patterns. | Score the named cells separately, verify comparable staining runs, and interpret intensity with the HPA reliability caveat (general IHC practice; HPA: reliability summary). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Oral mucosa | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Parathyroid gland | Glandular cells | High | Protein (IHC) | HPA → |
| Prostate | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Fallopian tube | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Seminal vesicle | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Skeletal muscle | Myocytes | Not detected | Protein (IHC) | HPA → |
| Soft tissue | Fibroblasts | Not detected | Protein (IHC) | HPA → |
Troubleshoot CAMKK2 chromogenic IHC in paraffin sections using the catalog antibody’s tissue image and the reported tissue and subcellular patterns (datasheet A03048; HPA).
A03048 has IHC images from human tumor and mouse brain paraffin sections, plus IF images from cultured cells and a human intestinal cancer paraffin section (catalog image captions).
A03048 has IHC images from human colorectal adenocarcinoma, esophageal squamous carcinoma and liver cancer paraffin sections, and mouse brain paraffin sections (catalog IHC captions). A03048 also has IF images from PC-3 and Hela cells and a human intestinal cancer paraffin section; the catalog lists human, mouse and rat reactivity (catalog IF captions; catalog reactivity).
Which to pick: Choose A03048 for tissue IHC on paraffin sections: its IHC captions document EDTA retrieval at pH 8.0 and primary antibody at 2 μg/ml; the fixative is unreported (catalog IHC captions). For IF/ICC, A03048 has images from PC-3 and Hela cells and a human intestinal cancer paraffin section, with a listed IF dilution of 5 μg/ml (catalog IF captions; catalog dilution). For cross-species work, A03048 lists human, mouse and rat reactivity, while its IHC images show human and mouse samples; clonality is unreported (catalog reactivity; catalog IHC captions; catalog clone field).