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- Table of Contents
Plan CAMKK2 paraffin-section IHC using cytoplasmic staining as the tissue pattern (HPA tissue IHC). Compare cerebral cortex neurons and prostate glandular cells, both reported as high-staining, while accounting for low consistency between staining and RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Predominantly cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining in neurons and epithelial cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A03048) | |
| Positive control | Cerebral cortex+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Staining has low consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Higher expression in brain (UniProt) | |
| Isoform / epitope | 7 isoforms; epitope coverage is unverified (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet A03048) with published CAMKK2 staining protocols for gynecologic tumors (PMC10472110) and breast cancer tissue microarrays (PMC6547743).
| Sample | Paraffin-embedded human colorectal adenocarcinoma tissue; fixative not specified (datasheet A03048) |
| Fixation | Image fixative and duration unreported (datasheet A03048); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A03048); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03048) |
| Primary antibody | Rabbit anti-CAMKK2, 2-5 μg/ml (datasheet A03048) |
| Primary incubation | Overnight at 4 °C (datasheet A03048) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A03048) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CAMKK2-positive staining in neuronal cells of cerebral cortex (HPA tissue IHC: High). HPA tissue profile: General cytoplasmic expression. No signal in the no-primary control. |
In paraffin tissue IHC, expect predominantly cytoplasmic CAMKK2 staining in neuronal cells of the cerebral cortex and glandular cells of the prostate, among other positive cell populations (HPA tissue IHC: High). Nuclear staining can be plausible because UniProt reports nuclear localization that varies with stimulation (UniProt Q96RR4: subcellular location). CAMKK2 has no transmembrane segment (UniProt Q96RR4: topology). Interpret intensity cautiously: HPA rates tissue staining Approved but reports low consistency with RNA data (HPA tissue IHC: reliability).
| Clear cytoplasmic signal in cerebral cortex neurons or prostate glandular cells, with recognizable unstained neighboring structures. | This matches two cell populations scored High by HPA (HPA tissue IHC). Score the intended cell population and compartment rather than treating the entire section as uniformly positive (general IHC practice). HPA’s Approved rating is accompanied by low staining–RNA consistency, so intensity alone does not prove specificity (HPA tissue IHC: reliability). |
| Predominantly crisp plasma-membrane outlines, extracellular deposits, or luminal staining replace intracellular signal. | These patterns warrant an artefact or nonspecific-binding check: CAMKK2 is reported in cytoplasm and nucleus and lacks a transmembrane segment (UniProt Q96RR4: location and topology). Nuclear signal alone is not grounds for rejection; UniProt reports predominantly nuclear localization in unstimulated cells and redistribution after forskolin induction (UniProt Q96RR4: subcellular location). |
| Strong signal centers on adipocytes or skeletal muscle myocytes while the intended positive cells stain weakly. | Those cell populations are scored Not detected in HPA tissue IHC (HPA tissue IHC: adipose tissue; skeletal muscle). Consider cross-reactivity or chromogenic endogenous activity before assigning CAMKK2 positivity (general IHC practice). A negative reference is a comparison for this staining setup, not proof that every specimen must lack signal. |
| Color covers stroma, empty spaces, and many cell types without a discernible intracellular boundary. | Diffuse staining does not resemble HPA’s general cytoplasmic profile (HPA tissue IHC: profile). It may reflect background from antibody binding, detection reagents, or substrate development (general IHC practice). Compare matched controls and assess whether any signal remains specifically associated with the expected cells. |
| No discernible signal appears in cerebral cortex neurons or prostate glandular cells. | These are HPA High populations, so an absent signal is an assay warning (HPA tissue IHC). Check slide integrity and the established IHC staining workflow before interpreting the specimen as negative (general IHC practice). HPA’s low staining–RNA consistency limits how confidently any single reference tissue predicts a result (HPA tissue IHC: reliability). |
| Cell compartment and stimulation state | HPA describes general cytoplasmic tissue staining and supported cytosolic ICC-IF localization (HPA tissue IHC; HPA subcellular). UniProt also places CAMKK2 in the nucleus and reports movement into cytoplasm and neurites after forskolin induction (UniProt Q96RR4). Keep assay type and cell state in view when judging a nuclear component. |
| Tissue and cell selection | Cerebral cortex neurons and prostate glandular cells are scored High, while adipocytes and skeletal muscle myocytes are Not detected (HPA tissue IHC). These comparisons help identify useful positive and low-signal reference populations; they do not define a universal intensity threshold (general IHC practice). |
| Antibody evidence | The listed antibodies HPA017389 and HPA063713 are IHC Approved; only HPA017389 is ICC Supported (HPA antibodies). Tissue staining also carries a low staining–RNA consistency note (HPA tissue IHC: reliability). Verify which antibody generated a reference pattern before transferring that expectation to another reagent. |
| Isoforms and target structure | UniProt lists 7 CAMKK2 isoforms, a kinase domain at residues 165–446, and no transmembrane segment or signal peptide (UniProt Q96RR4). Without an epitope map in the supplied evidence, these features cannot predict which isoforms a given antibody detects or justify a surface-staining interpretation. |
| Situation | Likely cause | Next action |
|---|---|---|
| The known positive tissue has no signal. | The staining workflow may have failed, or the antibody and tissue preparation may be incompatible (general IHC practice); HPA alone cannot identify which step failed. | Review tissue preservation, the established IHC antigen-retrieval conditions, antibody preparation, detection reagents, and development against a working control (general IHC practice). Do not infer a CAMKK2-specific fixation effect: none is established by the supplied UniProt or HPA records. |
| A negative-reference cell population stains strongly. | Cross-reactivity or endogenous chromogenic activity is possible (general IHC practice), especially when adipocytes or skeletal muscle myocytes are the stained cells (HPA tissue IHC: Not detected). | Compare an appropriate no-primary control and the expected positive cell population; check the detection-system controls and blocking steps used for the chromogen (general IHC practice). Treat unexpected staining as unresolved until its source is separated from specific intracellular signal. |
| The whole section has diffuse brown background. | Nonspecific binding, incomplete blocking, or excess chromogen development can obscure cell-level staining (general IHC practice). | Check a no-primary control, review the established blocking and wash steps, and compare development with the positive reference (general IHC practice). Reassess only discrete intracellular staining; HPA describes a general cytoplasmic profile (HPA tissue IHC). |
| Only a strong membrane rim or extracellular deposit is visible. | That distribution conflicts with reported cytoplasmic and nuclear locations and the absence of a transmembrane segment (UniProt Q96RR4). | Inspect morphology and matched controls for edge artefact, trapped reagent, or nonspecific deposits (general IHC practice). Avoid scoring a membrane-only pattern as CAMKK2 without independent evidence. |
| Nuclear and cytoplasmic signals disagree between specimens. | Cell state may matter: UniProt describes predominantly nuclear localization in unstimulated cells and redistribution after forskolin induction (UniProt Q96RR4). HPA tissue IHC reports general cytoplasmic expression (HPA tissue IHC). | Record nuclear and cytoplasmic staining separately, compare like cell types and conditions, and avoid declaring nuclear signal false solely from the HPA tissue summary (UniProt Q96RR4; HPA tissue IHC). |
| Does IF/ICC require the same compartment call as tissue IHC? | HPA reports supported cytosolic ICC-IF localization, while UniProt also reports nuclear and neuron-projection localization under specified contexts (HPA subcellular; UniProt Q96RR4). | Use the separate IF/ICC guide for its assay workflow. Here, compare localization claims by assay and cell state; the supplied ICC-IF evidence supports cytosol but does not establish an IHC protocol or a universal absence of nuclear signal (HPA subcellular; UniProt Q96RR4). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Oral mucosa | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Parathyroid gland | Glandular cells | High | Protein (IHC) | HPA → |
| Prostate | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Fallopian tube | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Seminal vesicle | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Skeletal muscle | Myocytes | Not detected | Protein (IHC) | HPA → |
| Soft tissue | Fibroblasts | Not detected | Protein (IHC) | HPA → |
Use the catalog antibody’s tissue protocol as a starting point, then verify staining against cell type, compartment and appropriate controls.
A03048 has IHC images from human paraffin sections and mouse brain, plus IF images from PC-3 and HeLa cells and a human paraffin section (catalog image captions).
A03048 is listed for IHC and IF/ICC in human, mouse, and rat samples (catalog applications and reactivity). Its IHC images show human colorectal adenocarcinoma, esophageal squamous carcinoma, liver cancer, and mouse brain paraffin sections; its IF images show PC-3 cells, HeLa cells, and a human intestinal cancer paraffin section (A03048 image captions).
Which to pick: For tissue IHC, choose A03048 at 2–5 μg/ml: its IHC captions document staining in paraffin sections, but do not report the fixative (A03048 catalog dilution and IHC image captions). For IF/ICC, A03048 is listed at 5 μg/ml and has cell and paraffin-section IF images (A03048 catalog applications, dilution, and IF image captions). For work across species, A03048 lists human, mouse, and rat reactivity; its IHC images document human and mouse sections (A03048 catalog reactivity and IHC image captions).