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- Table of Contents
Plan CAPN2 chromogenic IHC in paraffin sections with the IHC-validated antibody at 0.5–1 μg/mL (datasheet: A03492). Use high-staining bronchial respiratory epithelium as a reference and assess cytoplasmic staining by cell type (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasm observed in tissue; membrane translocation is a molecular expectation (HPA tissue IHC; UniProt) | |
| Staining pattern | Cytoplasmic staining in several cell types, including endothelium (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A03492) | |
| Positive control | Bronchus+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A03492) | |
| Caveat | Staining varies by cell type; score each population separately (HPA tissue IHC) | |
| Regulation | Expression regulation is not specified (UniProt) | |
| Isoform / epitope | 2 isoforms; residues 2–19 are removed, but the antibody epitope is unknown (UniProt) |
The catalog antibody protocol specifies citrate pH 6 retrieval (datasheet A03492). Two published CAPN2 IHC protocols provide tissue examples (PMC5716693; PMC10022304).
| Sample | Paraffin-embedded human intestinal cancer tissue; fixative not specified (datasheet A03492) |
| Fixation | Image fixative and duration unreported (datasheet A03492); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A03492) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03492) |
| Primary antibody | Rabbit anti-CAPN2, 0.5-1μg/ml (datasheet A03492) |
| Primary incubation | Overnight at 4 °C (datasheet A03492) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A03492) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CAPN2-positive staining in respiratory epithelial cells of bronchus (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in several different cell types, including endothelial cells. No signal in the no-primary control. |
CAPN2 should appear mainly in the cytoplasm of several cell types, including endothelial cells (HPA tissue IHC). Bronchial respiratory epithelial cells show high staining; several glandular cell populations show medium staining (HPA tissue IHC). CAPN2 is cytoplasmic and can move to the plasma membrane upon calcium binding; it has no transmembrane segment (UniProt P17655). HPA rates the tissue staining profile Approved, with medium consistency between staining and RNA expression (HPA tissue IHC).
| Distinct cytoplasmic staining in bronchial respiratory epithelial cells, with lighter staining in nearby cells. | A strong epithelial signal fits the reported High level in bronchus (HPA tissue IHC). Judge cell identity and cytoplasmic location together: CAPN2 is broadly expressed, so staining in additional cells is possible (UniProt P17655 tissue specificity; HPA tissue IHC). |
| Predominantly sharp nuclear staining, or a uniform rim around every cell with little cytoplasmic signal. | This is discordant with the mainly cytoplasmic tissue pattern (HPA tissue IHC). CAPN2 can move to the plasma membrane after calcium binding, but it has no transmembrane segment (UniProt P17655). Check the control slide and detection conditions before interpreting a rim as CAPN2. |
| Strong staining confined to adipocytes or to esophageal squamous epithelial cells. | Both cell populations are reported as Not detected (HPA tissue IHC). Treat isolated strong staining there as suspect; cross-reactivity or endogenous detection activity are possibilities (general IHC practice). A negative HPA observation does not prove that every specimen must be unstained. |
| A diffuse haze covers cells and spaces between them, obscuring cell boundaries. | An uninterpretable field cannot establish CAPN2 localization (general IHC practice). Compare it with a no-primary control for nonspecific detection or endogenous activity, then optimize blocking, washing, and detection conditions (general IHC practice). |
| No staining in bronchial respiratory epithelial cells on the test section. | That conflicts with the reported High staining in bronchus (HPA tissue IHC). First check a positive-control section and run controls for the IHC procedure (general IHC practice). HPA's Approved rating has medium staining–RNA consistency, so one negative section alone cannot settle target absence (HPA tissue IHC). |
| Cell and tissue context | Reported levels range from High in bronchial respiratory epithelium to Medium in several glandular cell populations, and Not detected in adipocytes (HPA tissue IHC). Score the named cell population, not the whole section. |
| Localization and calcium response | CAPN2 is cytoplasmic and can translocate to the plasma membrane upon calcium binding (UniProt P17655). A membrane-associated component can therefore be plausible, but a uniformly membrane-only IHC pattern needs control review (UniProt P17655; general IHC practice). |
| Antibody validation | HPA024470 is rated Approved for IHC, and the tissue profile has medium agreement between staining and RNA expression (HPA antibody validation; HPA tissue IHC). These ratings support comparison with the reported pattern but do not verify every stained cell in a new specimen. |
| Processing and isoforms | UniProt reports 2 isoforms and a propeptide at residues 2–19, with the mature chain spanning residues 20–700 (UniProt P17655). Antibody epitope location is not supplied, so these features cannot predict an isoform-specific or processing-specific IHC pattern. |
| IF/ICC: where should signal appear? | Mainly in the cytosol; HPA also reports connecting-piece and mid-piece staining and additional principal-piece staining in sperm (HPA subcellular ICC-IF). Those ICC-IF locations are context-specific and should not be substituted for the tissue IHC pattern. |
| Situation | Likely cause | Next action |
|---|---|---|
| Bronchial respiratory epithelium is blank. | This differs from the reported High signal (HPA tissue IHC); an IHC procedure problem or specimen variation may be involved (general IHC practice). | Review a positive-control section, primary-antibody use, detection reagents, and counterstain (general IHC practice). Optimize antigen retrieval as a general IHC step; target-specific fixation or retrieval sensitivity is unreported. |
| Every cell looks uniformly positive. | A uniform pattern does not reflect the reported differences among cell populations (HPA tissue IHC). Nonspecific detection or endogenous activity may contribute (general IHC practice). | Compare with a no-primary control, then check blocking, washing, and the detection system (general IHC practice). Reassess staining in identifiable cells. |
| The signal is mainly nuclear. | A nuclear-dominant pattern conflicts with the reported cytoplasmic localization (HPA tissue IHC; UniProt P17655). | Check focus and counterstain interpretation, compare the control slide, and confirm the pattern with an independently validated antibody if available (general IHC practice). |
| Adipocytes show strong, discrete staining. | Adipocytes are reported as Not detected in adipose tissue and breast (HPA tissue IHC); cross-reactivity or detection background is possible (general IHC practice). | Compare the same cell population in a no-primary control and inspect adjacent positive cell populations before assigning CAPN2 positivity (general IHC practice). |
| Only a narrow cell-edge signal is visible. | CAPN2 can translocate to the plasma membrane upon calcium binding (UniProt P17655), but tissue IHC is described chiefly as cytoplasmic (HPA tissue IHC). | Check whether cytoplasmic signal is also present and whether the edge signal persists above the no-primary control (general IHC practice). Avoid calling a membrane-only pattern definitive. |
| Weak staining in lung alveolar cells is scored as a failed run. | Alveolar cells are listed at Low staining, while bronchial respiratory epithelial cells are High (HPA tissue IHC). | Score the specific cell population and compare with an appropriate positive-control section (general IHC practice). Do not apply the bronchial intensity expectation to alveolar cells. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Cerebellum | Bergmann glia - cytoplasm/membrane | Medium | Protein (IHC) | HPA → |
| Fallopian tube | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Colon | Endothelial cells | Not detected | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CAPN2 staining in paraffin sections by checking retrieval, cell type, subcellular pattern and controls before comparing chromogenic signal (HPA tissue IHC; UniProt P17655).
Anti-CAPN2 antibodies have IHC images from paraffin-embedded human cancer tissue, rat small intestine, and mouse lung, plus IF/ICC images from HELA, A549, and U251 cells (catalog image captions).
A03492 will render with IHC data from paraffin-embedded human intestinal and lung cancer tissue and rat small intestine, and IF/ICC data from HELA cells (A03492 image captions). M03492 will render with IHC data from paraffin-embedded human intestinal and mammary cancer tissue and mouse lung, and IF/ICC data from A549 and U251 cells (M03492 image captions).
Which to pick: For paraffin-section IHC, choose A03492 for the rabbit antibody’s citrate pH 6 example or M03492 for the mouse monoclonal 8I6 antibody’s EDTA pH 8.0 example; fixation is unreported in both captions (A03492 and M03492 IHC image captions; M03492 catalog clone). For IF/ICC, both list that application at 2 μg/ml; A03492 has a HELA image, while M03492 has A549 and U251 images (catalog applications and IF dilutions; IF image captions). For cross-species work, A03492 lists human, mouse, and rat reactivity, while M03492 lists human, monkey, and mouse reactivity; the IHC images document rat tissue for A03492 and mouse tissue for M03492 (catalog reactivity; IHC image captions).