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Plan CCR7 chromogenic IHC on paraffin sections using documented human IHC conditions for the catalog antibody (datasheet A00390-2). Assess cytoplasmic staining in inflammatory-cell subsets, including high staining reported in lymph node non-germinal center cells and spleen white pulp (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic in inflammatory cells (HPA tissue IHC); membrane expected (UniProt) | |
| Staining pattern | Cytoplasmic staining in subsets of inflammatory cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A00390-2) | |
| Positive control | Lung+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation conditions consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Only subsets of inflammatory cells stain; adjacent cells may be negative (HPA tissue IHC) | |
| Regulation | Up-regulated in EBV-infected B cells (UniProt) | |
| Isoform / epitope | 0 isoforms annotated; signal 1–24 cleaved; epitope side matters (UniProt) |
The catalog antibody’s IHC-P protocol uses EDTA pH 8.0 retrieval (datasheet A00390-2). The published CCR7 IHC protocols below provide tissue-specific starting conditions (PMC6141431; PMC4008409; PMC8149363; PMC3923395).
| Sample | Paraffin-embedded human lymphoma tissue; fixative not specified (datasheet A00390-2) |
| Fixation | Image fixative and duration unreported (datasheet A00390-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A00390-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A00390-2) |
| Primary antibody | Rabbit anti-CCR7, 2-5 μg/ml (datasheet A00390-2) |
| Primary incubation | Overnight at 4 °C (datasheet A00390-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A00390-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CCR7-positive staining in alveolar cells of lung (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in subsets of inflammatory cells. No signal in the no-primary control. |
CCR7 is a 7-transmembrane cell-membrane receptor (UniProt P32248 topology and subcellular location). In paraffin-section IHC, expect staining in subsets of inflammatory cells, with high staining reported in lymph-node and tonsil non-germinal-center cells and spleen white-pulp cells (HPA tissue IHC). HPA rates the tissue pattern Enhanced, while reporting medium consistency between staining and RNA expression (HPA tissue IHC reliability).
| Discrete staining in lymph-node or tonsil non-germinal-center cells, or spleen white-pulp cells (HPA tissue IHC). | This matches the reported high IHC pattern (HPA tissue IHC). Assess the stained cells and compartment together: HPA describes cytoplasmic staining in subsets of inflammatory cells, while UniProt places the receptor at the cell membrane (HPA tissue IHC; UniProt P32248 subcellular location). |
| Predominantly nuclear or uniform staining across unrelated compartments (HPA tissue IHC; UniProt P32248 subcellular location). | Question the result before scoring it as CCR7: neither nuclear localisation nor a uniform tissue-wide pattern is established by these sources (HPA tissue IHC; UniProt P32248 subcellular location). Review morphology and controls; the HPA mitochondrial ICC-IF result belongs to a separate assay context (HPA subcellular ICC-IF). |
| Strong staining in adipocytes or respiratory epithelial cells (HPA tissue IHC). | These cells are reported as not detected in adipose tissue and bronchus, respectively (HPA tissue IHC). Check for cross-reactivity or endogenous detection activity as possible causes (general IHC practice). A cell-level comparison matters more than calling an entire tissue positive or negative (HPA tissue IHC). |
| Widespread, indistinct chromogen obscures cell boundaries (general IHC practice). | Treat this as background until controls and a dilution check show a cell-specific pattern (general IHC practice). It cannot establish CCR7 expression simply because the section contains lymphoid tissue; HPA reports staining in specified cell subsets (HPA tissue IHC). |
| No staining in lymph-node non-germinal-center cells or spleen white-pulp cells (HPA tissue IHC). | The missing signal conflicts with HPA's high staining observations (HPA tissue IHC). Check the assay controls, antibody suitability, retrieval and detection workflow before interpreting the sample as negative (general IHC practice). HPA's Enhanced rating does not guarantee every section will stain (HPA tissue IHC reliability). |
| Cell population and tissue (HPA tissue IHC). | HPA reports high staining in lung alveolar cells, lymph-node and tonsil non-germinal-center cells, and spleen white-pulp cells; skin corneal-layer cells are medium (HPA tissue IHC). Use the named cells when comparing sections; HPA also reports bone-marrow hematopoietic cells at low level (HPA tissue IHC). |
| Compartment and antibody epitope (UniProt P32248 topology). | CCR7 has 7 transmembrane segments plus extracellular and cytoplasmic regions (UniProt P32248 topology). UniProt does not identify the catalog antibody's epitope, so topology alone cannot predict its staining appearance or establish a retrieval requirement (UniProt P32248 topology; general IHC practice). |
| Antibody validation (HPA antibodies; HPA tissue IHC reliability). | HPA lists CAB003796 as IHC Enhanced and describes the tissue profile as Enhanced with medium staining–RNA consistency (HPA antibodies; HPA tissue IHC reliability). This supports using the reported pattern as a reference while retaining cell-level controls for interpretation (HPA tissue IHC; general IHC practice). |
| Does IF predict the paraffin-section result? (HPA subcellular ICC-IF). | No direct equivalence is established: HPA reports mitochondrial localisation in ICC-IF images from A-549, U2OS and Rh30, while UniProt lists cell membrane and HPA tissue IHC describes cytoplasmic staining in inflammatory-cell subsets (HPA subcellular ICC-IF; UniProt P32248 subcellular location; HPA tissue IHC). Assess IF on its own guide page. |
| Antigen retrieval and detection setup (general IHC practice). | Target-specific fixation effects are not established by the supplied assay evidence. Verify with a matched IHC source before attributing a result to fixation. |
| Situation | Likely cause | Next action |
|---|---|---|
| The expected lymphoid-cell populations are unstained (HPA tissue IHC). | An assay or detection failure is possible; absence of signal alone does not identify its cause (general IHC practice). | Verify section integrity, positive-control staining and detection reagents, then review antibody dilution and retrieval against the validated IHC workflow (general IHC practice). |
| Chromogen covers most cells without clear boundaries (general IHC practice). | Excess background can obscure the subset pattern reported by HPA (general IHC practice; HPA tissue IHC). | Check blocking, washing, reagent concentration and the negative control; score cells only after the background is resolved (general IHC practice). |
| Adipocytes or bronchial respiratory epithelium stain strongly (HPA tissue IHC). | Cross-reactivity or endogenous detection activity is possible in a discordant pattern (general IHC practice; HPA tissue IHC). | Compare a negative control and the expected positive-cell pattern; review endogenous activity blocking and antibody dilution (general IHC practice; HPA tissue IHC). |
| Signal appears mainly nuclear (general IHC practice). | The compartment conflicts with UniProt's membrane assignment and HPA's cytoplasmic tissue-IHC description (UniProt P32248 subcellular location; HPA tissue IHC). | Recheck counterstain, cell boundaries and controls before assigning CCR7 positivity; investigate nonspecific signal if the nuclear pattern persists (general IHC practice). |
| ICC-IF shows mitochondria, but tissue IHC shows another pattern (HPA subcellular ICC-IF; HPA tissue IHC). | The supplied HPA observations come from different assay contexts, and UniProt assigns CCR7 to the cell membrane (HPA subcellular ICC-IF; HPA tissue IHC; UniProt P32248 subcellular location). | Interpret the paraffin section against tissue-IHC cell populations and controls; evaluate the ICC-IF observation separately (HPA tissue IHC; HPA subcellular ICC-IF; general IHC practice). |
| A low-signal marrow section seems inconsistent with a high-signal lymphoid section (HPA tissue IHC). | HPA reports low staining in bone-marrow hematopoietic cells and high staining in specified lymph-node, tonsil and spleen populations (HPA tissue IHC). | Compare like cell populations and review the positive control before changing assay conditions; tissue-level signal alone does not resolve cell-specific staining (HPA tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Lung | Alveolar cells | High | Protein (IHC) | HPA → |
| Lymph node | Non-germinal center cells | High | Protein (IHC) | HPA → |
| Skin | Cells in corneal layer | Medium | Protein (IHC) | HPA → |
| Spleen | Cells in white pulp | High | Protein (IHC) | HPA → |
| Tonsil | Non-germinal center cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Endocrine cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CCR7 chromogenic IHC in paraffin sections using the catalog antibody’s tissue evidence, receptor topology, and appropriate controls.
Anti-CCR7 antibodies have IHC images from human lymphoma and spleen sections and IF images from human spleen and HeLa cells (catalog image captions); one also lists mouse and rat reactivity (catalog: M00390).
A00390-2 will render with IHC data from a paraffin-embedded human lymphoma section (A00390-2 image caption). M00390 will render with IHC data from paraffin-embedded human spleen; its catalog also lists ICC/IF and an IF image of HeLa cells (M00390 image captions; catalog applications).
Which to pick: For tissue IHC, choose A00390-2 when a documented paraffin-section procedure is useful: its lymphoma caption reports EDTA retrieval and 2 μg/ml primary antibody (A00390-2 image caption). For IF/ICC, choose M00390, a rabbit monoclonal with ICC/IF listed and a HeLa IF image (M00390 catalog); it also lists human, mouse and rat reactivity for cross-species work (M00390 catalog reactivity). Both IHC captions describe paraffin sections, but neither reports the fixative (A00390-2 and M00390 image captions).