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- Table of Contents
Plan CD28 paraffin-section IHC using lymph node or tonsil, where immune-cell subsets show cytoplasmic staining (HPA tissue IHC). Compare that pattern with CD28’s expected cell-surface location (UniProt), and start the catalog antibody at 2 μg/mL (datasheet: 2 μg/mL).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Observed immune-cell cytoplasm (HPA tissue IHC); expected cell surface (UniProt) | |
| Staining pattern | Selective cytoplasmic staining in immune-cell subsets (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6.0 HIER, 95–98 °C, 20 min (rule: cytoplasmic / membrane antigen) | |
| Positive control | Lymph node+1 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Tissue IHC shows cytoplasm despite surface topology (HPA tissue IHC; UniProt) | |
| Regulation | Regulation of staining intensity unreported (UniProt) | |
| Isoform / epitope | 7 isoforms; check extracellular versus cytoplasmic epitope (UniProt) |
The catalog antibody’s IHC-P protocol is followed by a published CD28 protocol for FFPE tissue from patients with adult T-cell leukemia/lymphoma (PMC8748252).
| Sample | Tissue sections; selected-image fixative not specified (standard IHC workflow) |
| Fixation | Image fixative and duration unreported (datasheet A00065); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat-induced epitope retrieval in citrate buffer, pH 6.0, 20 min at 95–98 °C (standard rule: cytoplasmic / membrane antigen) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit anti-CD28, 2 μg/mL (datasheet A00065) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CD28-positive staining in non-germinal center cells of lymph node (HPA tissue IHC: Medium). HPA tissue profile: Selective cytoplasmic expression in subsets of immune cells. No signal in the no-primary control. |
CD28 is a cell-surface receptor with an extracellular region at residues 19–152 and a membrane-spanning segment at 153–179 (UniProt P10747 topology). In tissue IHC, expect selective staining of immune-cell subsets; HPA reports medium cytoplasmic staining in lymph-node and tonsil non-germinal-center cells (HPA tissue IHC). HPA rates the tissue pattern Enhanced for consistency with RNA expression, pending external verification (HPA tissue IHC).
| Medium staining in subsets of lymph-node or tonsil non-germinal-center cells (HPA tissue IHC). | This matches the reported tissue IHC distribution and intensity (HPA tissue IHC). Score the stained immune-cell subsets separately from surrounding unstained cells; a uniformly positive field would exceed the selective pattern reported by HPA (HPA tissue IHC). |
| Predominantly nuclear staining, without the reported immune-cell pattern (HPA tissue IHC; UniProt P10747 location). | Treat a nuclear-only result as suspect: CD28 is assigned to the cell surface by UniProt, while HPA describes selective cytoplasmic tissue IHC staining (UniProt P10747 location; HPA tissue IHC). Check localization against a positive tissue control and examine the omitted-primary control before interpreting it as CD28 (standard IHC practice). |
| Strong staining of adipocytes or respiratory epithelial cells (HPA tissue IHC). | HPA reports CD28 as not detected in adipocytes of adipose tissue or respiratory epithelial cells of bronchus (HPA tissue IHC). Widespread staining there raises possible cross-reactivity or endogenous detection activity; assess the omitted-primary and detection controls (standard IHC practice). |
| Diffuse color across cells and tissue spaces, obscuring cell boundaries (standard IHC practice). | This is background rather than a scorable selective pattern (standard IHC practice; HPA tissue IHC). Compare an omitted-primary section, inspect blocking and washing, and review detection development under the same imaging conditions (standard IHC practice). |
| No signal in lymph-node or tonsil non-germinal-center cells (HPA tissue IHC). | An absent result conflicts with the reported medium staining in those cells (HPA tissue IHC). Verify that the control section contains the relevant cell population, then review antibody dilution, retrieval, and detection using the catalog antibody's IHC-P instructions (standard IHC practice). |
| Tissue IHC versus ICC-IF localization (HPA tissue IHC; HPA subcellular). | HPA describes selective cytoplasmic tissue IHC staining, while its ICC-IF summary supports plasma-membrane localization (HPA tissue IHC; HPA subcellular). Preserve that distinction when scoring paraffin sections; ICC-IF images do not establish the exact chromogenic tissue pattern (HPA tissue IHC; HPA subcellular). |
| CD28 topology (UniProt P10747 topology). | The extracellular region spans residues 19–152, the transmembrane segment 153–179, and the cytoplasmic tail 180–220 (UniProt P10747 topology). Membrane-associated signal is biologically plausible, but the supplied record does not identify the catalog antibody's epitope or predict its IHC appearance (UniProt P10747 topology). |
| Tissue-dependent abundance (HPA tissue IHC). | HPA reports medium staining in lymph-node and tonsil non-germinal-center cells, but low staining in appendix lymphoid tissue, splenic red-pulp cells, and marrow hematopoietic cells (HPA tissue IHC). A weak result in a low-staining tissue is less decisive than failure in the reported medium-staining controls (HPA tissue IHC). |
| Antibody-specific validation (HPA antibodies). | HPA lists IHC validation as Enhanced for HPA070003 and ICC validation as Supported for HPA041233 (HPA antibodies). These statuses apply to their respective antibodies and applications; they do not establish IHC-P performance for another antibody (HPA antibodies). |
| Reported negative cell populations (HPA tissue IHC). | HPA lists several unstained populations, including adipocytes in adipose tissue and glandular cells in adrenal gland (HPA tissue IHC). Use a documented negative population alongside a positive tissue to recognize widespread nonspecific color (HPA tissue IHC; standard IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive tissue has no interpretable staining (HPA tissue IHC). | The relevant non-germinal-center cells may be absent from the section, or the staining run may have failed (HPA tissue IHC; standard IHC practice). | Confirm the cell population on the counterstain; check the IHC-P dilution, retrieval, and detection steps against the catalog antibody instructions, then repeat with a positive control (standard IHC practice). |
| Low signal in appendix, spleen, or bone marrow (HPA tissue IHC). | These are reported as low-staining sites, with the specified positive populations differing by tissue (HPA tissue IHC). | Include lymph node or tonsil as a medium-staining comparator and score the specified cells in each section before treating a weak field as a failed run (HPA tissue IHC; standard IHC practice). |
| Staining appears mainly nuclear (UniProt P10747 location; HPA tissue IHC). | A nuclear-only pattern conflicts with the supplied CD28 localization and tissue IHC description; its source remains unresolved (UniProt P10747 location; HPA tissue IHC). | Compare the positive tissue and omitted-primary sections, then review staining specificity and detection background before assigning the signal to CD28 (standard IHC practice). |
| Many unrelated cell types stain strongly (HPA tissue IHC). | Cross-reactivity or endogenous detection activity is possible when cells HPA calls not detected show signal (HPA tissue IHC; standard IHC practice). | Inspect a documented negative population, run an omitted-primary control, and review the blocking and detection steps under matched conditions (HPA tissue IHC; standard IHC practice). |
| Diffuse chromogen obscures the selective pattern (HPA tissue IHC). | Excess background can make the reported subset staining impossible to distinguish (standard IHC practice; HPA tissue IHC). | Compare matched controls and review primary-antibody dilution, blocking, washes, and chromogen development using the catalog antibody's IHC-P instructions (standard IHC practice). |
| Can ICC-IF membrane images define the expected IHC-P result? (HPA subcellular). | HPA supports plasma-membrane localization by ICC-IF, but reports selective cytoplasmic staining for tissue IHC; the antibody validation entries also differ by application (HPA subcellular; HPA tissue IHC; HPA antibodies). | Judge the paraffin-section result against tissue IHC controls and its own antibody validation; consult the separate IF/ICC guide for fluorescence interpretation (HPA tissue IHC; HPA antibodies; standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Lymph node | Non-germinal center cells | Medium | Protein (IHC) | HPA → |
| Tonsil | Non-germinal center cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CD28 staining in paraffin sections by checking retrieval, cellular distribution, controls, and scoring; use the IF guidance for a separate fluorescence workflow.
A00065 has IHC and IF images from human spleen tissue (catalog IHC and IF image captions); Human is its only listed reactivity (catalog reactivity: Human).
A00065 will render with an IHC image from human spleen tissue at 2 μg/mL (catalog IHC image caption). Its IF application is supported by a human spleen image at 20 μg/mL (catalog applications; catalog IF image caption).
Which to pick: Choose A00065 for human tissue IHC; its image documents human spleen, but section processing and fixative are unreported, so paraffin compatibility cannot be confirmed from the caption (catalog IHC image caption). For IF, A00065 has a human spleen image; ICC validation and clonality are unreported. No cross-species option is listed (catalog reactivity: Human).