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- Table of Contents
Plan chromogenic CHEK2 IHC in paraffin sections around the nuclear staining reported in most tissues (HPA tissue IHC). This guide covers fixation, antigen retrieval and antibody titration, with colon glandular cells as a high-staining reference (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear staining in most tissues (HPA tissue IHC) | |
| Staining pattern | Nuclear staining across many tissue cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB9692) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep formalin fixation consistent between sections (standard IHC practice; not target-specific) | |
| Caveat | Adipocytes may lack detectable staining (HPA tissue IHC) | |
| Regulation | DNA damage activates CHEK2; abundance unclear (UniProt) | |
| Isoform / epitope | 13 isoforms; isoform-specific staining is unestablished (UniProt) |
The catalog antibody’s IHC-P protocol uses EDTA pH 8.0 heat retrieval (datasheet: PB9692). The published CHEK2 protocols below provide tissue-specific IHC conditions (PMC7967923; PMC8497153; PMC10886656; PMC6004653).
| Sample | Paraffin-embedded human lung cancer tissue; fixative not specified (datasheet PB9692) |
| Fixation | Image fixative and duration unreported (datasheet PB9692); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB9692); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9692) |
| Primary antibody | Rabbit anti-CHEK2, 0.5-1μg/ml (datasheet PB9692) |
| Primary incubation | Overnight at 4 °C (datasheet PB9692) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9692) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CHEK2-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Nuclear expression in most tissues. No signal in the no-primary control. |
CHEK2 staining should be predominantly nuclear in cells that express it, with nucleoplasmic localization and possible PML body association (UniProt O96017; HPA subcellular). HPA reports nuclear expression in most tissues, including high staining in colon glandular cells and bronchial basal cells (HPA tissue IHC). Its tissue IHC reliability is Enhanced, with medium agreement between antibody staining and RNA data (HPA tissue IHC). CHEK2 has no transmembrane segment or signal peptide (UniProt O96017 topology).
| Distinct nuclear staining in colon glandular cells or bronchial basal cells, with relatively clear surrounding tissue (HPA tissue IHC). | This matches the reported high staining in those cell types and CHEK2's predominantly nuclear location (HPA tissue IHC; UniProt O96017). Assess the named cell population rather than assigning one intensity to the whole section (general IHC practice). |
| Strong, widespread cytoplasmic or membrane staining with little nuclear signal in a positive tissue (HPA tissue IHC; UniProt O96017). | That compartment pattern conflicts with the reported nuclear pattern and lack of a transmembrane segment (HPA tissue IHC; UniProt O96017 topology). Treat it as suspect and check antibody specificity and detection controls (general IHC practice). |
| Prominent staining in adipocytes or prostate glandular cells (HPA tissue IHC). | HPA lists these cell populations as not detected (HPA tissue IHC). A strong signal there warrants checks for cross-reactivity or endogenous detection activity; one discrepant section alone does not establish either cause (general IHC practice). |
| Diffuse colour across nuclei, cytoplasm and extracellular areas, obscuring cell boundaries (general IHC practice). | This is difficult to score as CHEK2 because the supported pattern is mainly nuclear (HPA tissue IHC; HPA subcellular). Review background controls, blocking and detection conditions before interpreting intensity (general IHC practice). |
| No visible nuclear signal in colon glandular cells or bronchial basal cells (HPA tissue IHC). | HPA reports high staining in those cells, so check tissue identity, section quality, antibody use and the detection run (HPA tissue IHC; general IHC practice). Absence of stain in one run cannot by itself establish loss of CHEK2 (general IHC practice). |
| Tissue and cell selection (HPA tissue IHC) | Colon glandular cells and bronchial basal cells are reported high, while adipocytes and prostate glandular cells are not detected (HPA tissue IHC). Use the named cell populations when judging controls; HPA also reports low staining in several other populations (HPA tissue IHC). |
| Antibody validation and evidence limits (HPA antibodies; HPA tissue IHC) | CAB002030 is IHC Enhanced and HPA001878 is IHC Approved (HPA antibodies). The overall tissue profile is Enhanced with medium agreement to RNA data; these labels support interpretation but do not guarantee every specimen's result (HPA tissue IHC; general IHC practice). |
| Isoforms and antibody epitope (UniProt O96017) | UniProt lists 13 CHEK2 isoforms, including isoform 10 throughout the cell (UniProt O96017). Epitope coverage is not supplied, so a given antibody's recognition of each isoform and the cause of any extranuclear signal remain unresolved. |
| Phosphorylation and assay scope (UniProt O96017) | CHEK2 has documented modified residues, including Thr-68 phosphorylation by ATM and MAP3K20 (UniProt O96017). The supplied evidence gives no phospho-specific antibody claim; ordinary CHEK2 staining should not be scored as kinase activation without separate validation (general IHC practice). |
| IF/ICC Q&A: what location is reported? (HPA subcellular) | HPA supports nucleoplasmic localization in ICC-IF and lists an additional Golgi location as uncertain (HPA subcellular). That uncertain observation should not override the predominantly nuclear IHC expectation (HPA tissue IHC; HPA subcellular). |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive tissue lacks nuclear staining (HPA tissue IHC). | The run may have failed, or the sampled section may differ from the HPA example (general IHC practice; HPA tissue IHC). | Confirm the named positive cell population and run controls; review the antibody's supplied IHC-P conditions and detection steps (HPA tissue IHC; general IHC practice). |
| Cytoplasmic staining dominates in an IHC-positive cell population (HPA tissue IHC). | The pattern differs from CHEK2's reported nuclear localization; the supplied evidence does not identify a specific cause (UniProt O96017; HPA tissue IHC). | Check antibody and detection controls, then score nuclear and cytoplasmic staining separately rather than combining them (general IHC practice). |
| Strong signal appears in adipocytes or prostate glandular cells (HPA tissue IHC). | Those populations are reported as not detected; cross-reactivity or endogenous detection activity is possible (HPA tissue IHC; general IHC practice). | Check appropriate negative and detection-only controls before calling that signal CHEK2 (general IHC practice). |
| Background colour obscures nuclear boundaries (general IHC practice). | Excess detection background or incomplete blocking can make localization unreadable (general IHC practice). | Review blocking, washing, antibody concentration and detection-only controls; judge localization only where nuclei remain distinct (general IHC practice). |
| Staining varies among tissues expected to express CHEK2 (HPA tissue IHC; UniProt O96017). | HPA reports cell-specific high, low and undetected staining, while its overall antibody-to-RNA consistency is medium (HPA tissue IHC). | Compare the same named cell types and use matched run controls before interpreting intensity differences (HPA tissue IHC; general IHC practice). |
| A Golgi-like signal is proposed as the main CHEK2 result (HPA subcellular). | HPA calls the additional Golgi location uncertain, while nucleoplasmic localization is supported (HPA subcellular). | Record the observation separately and require independent specificity evidence before treating it as the expected IHC pattern (HPA subcellular; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Basal cells | High | Protein (IHC) | HPA → |
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Parathyroid gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Prostate | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Seminal vesicle | Glandular cells | Not detected | Protein (IHC) | HPA → |
Use compartment, tissue context, and matched controls to troubleshoot CHEK2 staining in chromogenic paraffin-section IHC.
Anti-CHEK2 antibodies have IHC figures from human lung cancer, colon carcinoma, testis and colon, and mouse spleen; IF/ICC figures use human cells (catalog image captions).
PB9692 shows paraffin-embedded human lung cancer; A00277-1 shows formalin-fixed, paraffin-embedded colon carcinoma; M00277 shows paraffin-embedded human testis (each SKU’s IHC caption). M00277-3 shows human colon, M00277-4 shows mouse spleen, and A00277 shows Jurkat cells by ICC/IF (each SKU’s image caption).
Which to pick: For tissue IHC, choose PB9692 for human paraffin sections (PB9692 IHC caption; fixative unreported) or A00277-1 when a paraffin-section, paraffin-embedded example is useful (A00277-1 IHC caption). For IF/ICC, choose A00277, which lists both applications and has a Jurkat-cell figure (A00277 catalog applications and image caption). For cross-species IHC planning, PB9692 and M00277-3 list human, mouse and rat reactivity, while M00277-4 lists human and mouse and shows mouse spleen staining; the M00277-3 and M00277-4 captions do not report fixation (catalog reactivity and each SKU’s IHC caption). The selected PB9692 tissue-IHC caption documents paraffin sections, but does not specify the fixative (selected-SKU IHC image PB9692).