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- Table of Contents
Plan CPAMD8 paraffin-section IHC around cytoplasmic and membranous staining, including high signals in adipocytes and adrenal glandular cells (HPA tissue IHC). Start the catalog antibody at 0.5–1 μg/ml (datasheet A12898), and interpret results in light of uncertain agreement between staining and RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and membranous tissue staining (HPA tissue IHC) | |
| Staining pattern | Glandular and other cells: cytoplasmic/membranous staining (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A12898) | |
| Positive control | Adipose tissue+4 more · see all | |
| Negative control | Appendix+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A12898) | |
| Caveat | A secreted variant may make staining differ from tissue RNA (HPA tissue IHC) | |
| Regulation | Specific regulators are unreported (UniProt) | |
| Isoform / epitope | 2 isoforms; signal peptide is cleaved; verify epitope coverage (UniProt) |
The catalog antibody protocol uses citrate pH 6 retrieval (datasheet A12898); the published cattle IHC protocol below uses TE pH 9 (PMC5500361).
| Sample | Paraffin-embedded human lung cancer tissue; fixative not specified (datasheet A12898) |
| Fixation | Image fixative and duration unreported (datasheet A12898); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A12898) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A12898) |
| Primary antibody | Rabbit anti-CPAMD8, 0.5-1μg/ml (datasheet A12898) |
| Primary incubation | Overnight at 4 °C (datasheet A12898) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A12898) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CPAMD8-positive staining in adipocytes of adipose tissue (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic and membranous expression in several different tissue types. No signal in the no-primary control. |
In paraffin IHC, expect cytoplasmic and membranous CPAMD8 staining in selected cell populations, including adipocytes, respiratory epithelium and cerebellar Purkinje cells (HPA: High; cytoplasmic and membranous profile). Secreted and cell-membrane annotations, with no transmembrane segment, make extracellular signal plausible but do not define its appearance (UniProt Q8IZJ3 topology). Interpret the pattern cautiously: HPA rates tissue IHC reliability Uncertain because staining and RNA expression have low consistency (HPA: tissue IHC reliability).
| Cytoplasmic and membranous staining in adipocytes, bronchial respiratory epithelial cells or cerebellar Purkinje cells. | This fits the reported compartment and cell types (HPA: cytoplasmic and membranous profile; High in each listed cell type). Compare staining within the named cells. HPA's Uncertain reliability means agreement supports a working interpretation, rather than confirming antibody specificity (HPA: tissue IHC reliability). |
| Predominantly nuclear staining, with little cytoplasmic or membranous signal in the expected cells. | A nuclear-dominant pattern differs from the reported tissue profile (HPA: cytoplasmic and membranous profile). Check the counterstain and detection controls, then reassess antibody specificity. The supplied record does not establish a nuclear CPAMD8 pattern (HPA: tissue IHC profile; UniProt Q8IZJ3 subcellular annotations). |
| Strong staining in appendix glandular cells or bone-marrow hematopoietic cells. | HPA reports CPAMD8 as Not detected in those specific cell populations (HPA: appendix glandular cells; bone-marrow hematopoietic cells). First consider nonspecific antibody binding or endogenous detection activity; do not treat either whole tissue as a universal negative control. |
| Widespread diffuse color obscures cell boundaries and appears in a no-primary control. | The control result points to detection background rather than interpretable CPAMD8 staining (general IHC practice). Distinguish diffuse background from plausible extracellular signal: CPAMD8 is annotated as secreted, while HPA's observed tissue profile is cytoplasmic and membranous (UniProt Q8IZJ3; HPA: tissue IHC profile). |
| No visible signal in adipocytes despite an intact section and readable counterstain. | Adipocytes are reported High by HPA, so their absence of staining warrants a technical and antibody check (HPA: adipocytes High). Confirm the cell identification and compare a second reported High population before concluding that the specimen lacks CPAMD8; HPA rates the IHC evidence Uncertain (HPA: tissue IHC reliability). |
| Tissue and cell selection | HPA calls adipocytes, bronchial respiratory epithelial cells and cerebellar Purkinje cells High, while appendix glandular cells are Not detected (HPA: tissue IHC). Score the specified cell population, because these labels do not describe every cell in its tissue. |
| Compartment and processing | UniProt annotates CPAMD8 as secreted and cell-membrane associated, with a signal peptide at residues 1–25 and a chain at 26–1885 (UniProt Q8IZJ3). The record supplies no cleavage or shedding pattern to assign to a particular IHC signal. |
| Isoforms and epitope coverage | UniProt lists 2 isoforms, but the supplied evidence does not map an IHC antibody epitope to either one (UniProt Q8IZJ3; HPA: antibody list). A different staining result between antibodies cannot be attributed to an isoform without further epitope information. |
| Glycosylation | Five glycosylation sites are annotated at residues 117, 190, 267, 757 and 1439 (UniProt Q8IZJ3). These annotations alone do not predict antigen-retrieval requirements, fixation sensitivity or staining intensity in a paraffin section. |
| IHC antibody evidence | HPA rates IHC for HPA031327, HPA031328 and HPA031330 Uncertain (HPA: antibody validation). If comparing stains, record the antibody identity and judge agreement at the cell and compartment level; apparent agreement still needs cautious interpretation (HPA: tissue IHC reliability Uncertain). |
| IF/ICC question: should focal adhesions guide IHC scoring? | HPA reports focal adhesion sites in ICC-IF with uncertain localisation and lists HPA031329 as ICC Approved (HPA: subcellular summary; antibody validation). That observation does not establish a paraffin IHC pattern or an IHC protocol; use the tissue IHC profile for this application (HPA: tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| A reported High population gives no chromogenic signal. | Possible section, retrieval, antibody or detection failure (general IHC practice); HPA's High call alone does not identify the failed step (HPA: tissue IHC). | Check tissue preservation and the assay's positive and detection controls. Compare another HPA-High cell population, then optimize retrieval and antibody dilution within the IHC-validated antibody's instructions (general IHC practice; HPA: High populations). |
| Signal is predominantly nuclear. | The compartment differs from HPA's cytoplasmic and membranous tissue profile (HPA: tissue IHC); counterstain overlap or nonspecific signal may confuse localisation (general IHC practice). | Inspect the signal against the counterstain at higher magnification and review no-primary controls. Repeat with an independently assessed IHC antibody if available; HPA's listed IHC antibody ratings remain Uncertain (HPA: antibody validation). |
| Appendix glandular cells stain as strongly as a proposed positive control. | HPA reports those cells as Not detected; cross-reactivity or endogenous detection activity is possible (HPA: appendix glandular cells; general IHC practice). | Confirm that the stained cells are glandular cells, inspect a no-primary control and use the detection system's appropriate endogenous-activity block (general IHC practice). Reassess specificity against HPA-High cells (HPA: tissue IHC). |
| Brown signal spreads across most of the section or appears in the no-primary control. | Excess detection background or endogenous activity can obscure cell boundaries (general IHC practice). Secreted CPAMD8 makes extracellular localisation possible, but does not validate indiscriminate staining (UniProt Q8IZJ3). | Review blocking, washes and chromogen development using routine IHC controls (general IHC practice). Score CPAMD8 only where a reproducible cellular pattern remains distinguishable from control background (HPA: tissue IHC profile). |
| Two antibodies stain different cells or compartments. | HPA rates its three listed IHC antibodies Uncertain, and the tissue profile has low staining–RNA consistency (HPA: antibody validation; tissue IHC reliability). Epitope coverage is unspecified in the supplied record. | Record antibody IDs, section conditions and the exact cell populations. Compare matched sections and controls before choosing a working pattern; do not resolve the discrepancy by assuming an isoform or retrieval effect (UniProt Q8IZJ3: two isoforms; HPA: tissue IHC reliability). |
| ICC-IF shows focal adhesion signal that does not match paraffin IHC. | HPA's focal adhesion localisation is uncertain and comes from ICC-IF, while its tissue IHC profile is cytoplasmic and membranous (HPA: subcellular summary; tissue IHC). | Evaluate paraffin sections against the tissue IHC pattern and controls. Treat ICC-IF as a separate application with its own validation; HPA031329 is ICC Approved, while its supplied listing gives no IHC rating (HPA: antibody validation). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Uncertain — Low consistency between antibody staining and RNA expression data. At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Cerebellum | Purkinje cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Colon | Endothelial cells | Not detected | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CPAMD8 staining in paraffin sections by checking retrieval, controls, cellular pattern and detection before interpreting chromogenic signal.
A12898 has real IHC data from paraffin sections of human lung and mammary cancer tissues (catalog: IHC image captions). Monkey reactivity is listed; IF data are absent (catalog: reactivity; IF images).
A12898 will render with its own IHC figure from a paraffin section of human lung cancer tissue (catalog: figure caption). Its other IHC caption documents human mammary cancer tissue; the catalog lists human and monkey reactivity, but provides no monkey IHC image (catalog: IHC image captions; reactivity).
Which to pick: Choose A12898 for chromogenic IHC on paraffin sections: its captions document citrate retrieval at pH 6 for 20 minutes, a 1 μg/ml rabbit primary, and DAB detection in human tissue (catalog: IHC image captions). No IF/ICC validated SKU is supplied here; A12898 has no listed IF application, dilution or image (catalog: applications; IF dilution; IF images). A12898 is the cross-species candidate because human and monkey reactivity are listed, although its IHC images show human tissue only; its clone and the tissue fixative are unreported (catalog: reactivity; IHC image captions; clone).