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- Table of Contents
Plan chromogenic CTHRC1 IHC on paraffin sections with the catalog antibody at 0.5–1 μg/mL (datasheet A05203-1). Compare cytoplasmic staining in intestinal glandular cells with a negative control such as prostate glandular cells (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Observed cytoplasm (HPA tissue IHC); secreted ECM protein (UniProt) | |
| Staining pattern | Cytoplasmic staining in gut glandular cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A05203-1) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Secretion can separate protein and RNA tissue patterns (HPA tissue IHC) | |
| Regulation | Regulation not specified (UniProt) | |
| Isoform / epitope | 3 isoforms; mature chain 31–243; epitopes unreported (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet: A05203-1) with two published CTHRC1 paraffin-section protocols (PMC3466254; PMC13235751).
| Sample | Paraffin-embedded human mammary cancer tissue; fixative not specified (datasheet A05203-1) |
| Fixation | Image fixative and duration unreported (datasheet A05203-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A05203-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A05203-1) |
| Primary antibody | Rabbit anti-CTHRC1, 0.5-1μg/ml (datasheet A05203-1) |
| Primary incubation | Overnight at 4 °C (datasheet A05203-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A05203-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CTHRC1-positive staining in glandular cells of appendix (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in several tissues. No signal in the no-primary control. |
CTHRC1 is secreted into the extracellular space and matrix and has no transmembrane segment (UniProt Q96CG8 topology). In paraffin sections, expect cytoplasmic staining in several tissues, including glandular cells of the colon and trophoblastic cells of the placenta (HPA tissue IHC: High). Treat that pattern as a guide: HPA rates its tissue IHC profile Approved, pending external verification, and notes that secreted protein may not coincide with its site of RNA expression (HPA tissue IHC: reliability description).
| Strong cytoplasmic signal in colon glandular cells or placental trophoblastic cells (HPA tissue IHC: High). | This matches the reported tissue IHC pattern (HPA tissue IHC: cytoplasmic expression). Score the named cell population and its compartment; secretion means nearby extracellular signal may also be biologically plausible, but HPA does not establish it as the required positive pattern (UniProt Q96CG8: extracellular space and matrix; HPA tissue IHC: profile). |
| Predominantly nuclear staining in a paraffin tissue section, without the expected cytoplasmic pattern (HPA tissue IHC: profile). | Treat it as an unresolved IHC localisation discrepancy and check controls and detection artefacts (general IHC practice). HPA separately reports approved nucleoplasmic ICC-IF localisation, so a nuclear image alone cannot prove that an antibody is cross-reactive (HPA subcellular ICC-IF: Nucleoplasm approved). |
| Strong staining in adipocytes or prostate glandular cells, reported as Not detected by HPA (HPA tissue IHC). | Investigate cross-reactivity or endogenous detection activity, especially if a no-primary control also stains (general IHC practice). HPA's Not detected designation describes its sampled cells and assay; it does not prove universal absence across specimens or conditions (HPA tissue IHC: Not detected). |
| Widespread, similar colour across cells and empty tissue spaces, with little cell-type contrast (general IHC practice). | Diffuse background makes compartment and cell-type scoring unreliable (general IHC practice). Compare a no-primary control and review blocking, washing and chromogen development before calling the pattern CTHRC1-specific (general IHC practice); HPA reports a selective cytoplasmic tissue profile (HPA tissue IHC). |
| No signal in colon glandular cells or kidney tubule cells (HPA tissue IHC: High). | First suspect an assay or section-level failure and check an on-run positive control, antibody dilution, retrieval and detection steps (general IHC practice). A single negative section cannot overturn the HPA reference pattern, whose Approved reliability remains pending external verification (HPA tissue IHC: reliability description). |
| Secretion and topology (UniProt Q96CG8: extracellular space, matrix; no transmembrane segment). | Protein can be present beyond its producing cell, so interpret adjacent extracellular colour in tissue context (UniProt Q96CG8: localisation; general IHC practice). HPA's observed tissue IHC pattern is cytoplasmic and does not establish a required matrix-staining threshold (HPA tissue IHC: profile). |
| Maturation and glycosylation (UniProt Q96CG8: signal peptide 1–30; chain 31–243; site 186). | The annotated mature chain excludes the signal peptide (UniProt Q96CG8: processing). Epitope placement could matter for antibody recognition, but the supplied record gives no antibody epitope; do not predict staining loss or a retrieval requirement from these annotations alone (UniProt Q96CG8; general IHC practice). |
| Three annotated isoforms (UniProt Q96CG8: isoforms 1, 2 and 3). | Antibody coverage across isoforms cannot be inferred without an epitope or isoform-validation record (UniProt Q96CG8: isoforms; general IHC practice). The reported expression of isoform 1 in calcified atherosclerotic plaque and chondrocyte-like cells is not an HPA tissue IHC intensity claim (UniProt Q96CG8: tissue specificity). |
| Choice of tissue controls (HPA tissue IHC: High and Not detected categories). | Colon glandular cells and kidney tubule cells offer reported High reference patterns; adipocytes and prostate glandular cells offer reported Not detected comparisons (HPA tissue IHC). Interpret each against its named cell type, since a whole-section positive or negative label can hide mixed tissue populations (general IHC practice). |
| Antibody validation (HPA antibodies: HPA059806 IHC Approved; HPA061896 ICC Approved). | The listed validations apply to different assays and antibodies (HPA antibodies). HPA's tissue IHC reliability is Approved and pending external verification; the supplied record does not label the IHC pattern Enhanced (HPA tissue IHC: reliability description; HPA antibodies). |
| IF/ICC Q&A: Should nucleoplasmic ICC-IF staining define the paraffin IHC result? (HPA subcellular ICC-IF). | No. HPA reports approved nucleoplasmic localisation in ICC-IF, while its tissue IHC profile is cytoplasmic (HPA subcellular ICC-IF; HPA tissue IHC). Assess each assay against its own reported pattern and controls (general IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected glandular or trophoblastic cells are blank (HPA tissue IHC: High). | A missed assay step, ineffective detection or an unsuitable working dilution can suppress signal (general IHC practice). | Check the on-run positive section, antibody preparation and detection reagents; optimise retrieval and dilution using standard IHC controls before interpreting a biological negative (general IHC practice). No CTHRC1-specific retrieval condition or dilution is supplied. |
| A no-primary section stains alongside the test section (general IHC practice). | Endogenous enzyme activity or nonspecific detection chemistry may contribute colour in chromogenic IHC (general IHC practice). | Review the detection system and its appropriate endogenous-activity block; compare the control and test sections at the same cell types (general IHC practice). Do not assign that shared colour to CTHRC1. |
| All tissue regions show a diffuse haze that obscures the cytoplasmic pattern (HPA tissue IHC: profile). | Excess reagent, insufficient washing or overdevelopment can raise background (general IHC practice). | Review antibody dilution, blocking, washes and chromogen development with matched controls; rescore only where named cells remain distinguishable (general IHC practice). |
| Signal appears mainly nuclear in tissue IHC (HPA tissue IHC: cytoplasmic profile). | The paraffin IHC result conflicts with HPA's tissue pattern; HPA's separate ICC-IF nucleoplasmic finding does not identify the cause (HPA tissue IHC; HPA subcellular ICC-IF). | Check a no-primary control and a reported High tissue, then review antibody identity and detection settings before assigning localisation (general IHC practice; HPA tissue IHC: High). |
| Cells reported Not detected stain as strongly as the positive control (HPA tissue IHC). | Cross-reactivity or endogenous detection activity is possible, although specimens may differ from HPA's sampled material (general IHC practice; HPA tissue IHC: Not detected). | Compare the named cell populations on matched sections, inspect the no-primary control and confirm that the positive-control pattern is cytoplasmic (general IHC practice; HPA tissue IHC: profile). |
| Extracellular deposits stain while the expected cells stain weakly (UniProt Q96CG8: extracellular localisation; HPA tissue IHC: profile). | Secretion could contribute extracellular signal, but HPA's tissue profile does not validate a matrix-only positive call (UniProt Q96CG8; HPA tissue IHC). | Record cellular and extracellular staining separately, inspect background controls and compare a reported High tissue before judging specificity (general IHC practice; HPA tissue IHC: High). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Pending external verification. At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Kidney | Cells in tubules | High | Protein (IHC) | HPA → |
| Placenta | Trophoblastic cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | Not detected | Protein (IHC) | HPA → |
| Ovary | Ovarian stroma cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CTHRC1 staining in paraffin sections by checking retrieval, cellular and extracellular localisation, and controls before comparing staining scores.
Two anti-CTHRC1 antibodies have IHC images from human tissue and IF images from human tissue or mouse cells (catalog image captions); both list Human, Mouse and Rat reactivity (catalog applications/reactivity).
A05203-1 shows paraffin-section IHC in human mammary cancer tissue and IF/ICC in mouse HEPA1-6 cells (A05203-1 image captions). A05203 shows IHC and IF in human small intestine tissue (A05203 image captions).
Which to pick: Choose A05203-1 for paraffin-section IHC because its caption documents that preparation and 1 μg/mL primary antibody (A05203-1 IHC caption); the fixative is unreported (A05203-1 IHC caption). For IF/ICC in mouse cells, choose A05203-1 (A05203-1 IF caption); for IF in human small intestine tissue, choose A05203 (A05203 IF caption). Both list Human, Mouse and Rat reactivity, but their illustrated IHC results are human samples (catalog reactivity; IHC captions); clonality is unreported for both (catalog clone fields).