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- Table of Contents
Plan chromogenic paraffin IHC using hepatocytes as a high-staining reference and duodenal glandular cells as a medium-staining reference (HPA tissue IHC). This guide covers fixation, antibody titration, controls, and interpretation of cytoplasmic staining, including the reported cross-gene detection caveat (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining (HPA tissue IHC); ER membrane (UniProt) | |
| Staining pattern | High in hepatocytes; medium in duodenal glandular cells; cytoplasmic (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A02102-2) | |
| Positive control | Liver+1 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across paraffin sections. (standard IHC practice; not target-specific) | |
| Caveat | Antibody may detect proteins from more than one gene (HPA tissue IHC) | |
| Regulation | Expression regulation not annotated (UniProt) | |
| Isoform / epitope | No isoforms; one 1–490 chain; epitope side unannotated (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet A02102-2) is accompanied by a published rat liver paraffin-section workflow (PMC12840301).
| Sample | Paraffin-embedded rat liver tissues; fixative not specified (datasheet A02102-2) |
| Fixation | Image fixative and duration unreported (datasheet A02102-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A02102-2) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02102-2) |
| Primary antibody | Rabbit anti-CYP2C19, 1μg/ml (datasheet A02102-2) |
| Primary incubation | Overnight at 4 °C (datasheet A02102-2) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A02102-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CYP2C19-positive staining in hepatocytes of liver (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in liver and small intestines. No signal in the no-primary control. |
CYP2C19 is associated with the endoplasmic reticulum and microsome membranes, with no transmembrane segment annotated (UniProt P33261 topology). In paraffin-section IHC, expect cytoplasmic staining chiefly in hepatocytes, with weaker staining in duodenal glandular cells (HPA: High in hepatocytes; Medium in duodenal glandular cells). HPA rates the tissue pattern Supported but reports medium agreement with RNA data and cautions that the staining antibodies can target proteins from more than one gene (HPA tissue IHC).
| Strong cytoplasmic signal in hepatocytes, with a weaker duodenal glandular-cell signal. | This matches the reported tissue pattern (HPA: High in hepatocytes; Medium in duodenal glandular cells). The membrane association supports an intracellular pattern, but routine chromogenic IHC does not by itself resolve the endoplasmic reticulum (UniProt P33261 subcellular location). |
| Predominantly nuclear staining, or a crisp cell-surface rim where cytoplasmic signal is absent. | These compartments conflict with the reported cytoplasmic tissue stain and endoplasmic reticulum or microsome association (HPA tissue IHC; UniProt P33261 subcellular location). Treat the result as suspect and assess staining specificity and section-level artefact before assigning it to CYP2C19. |
| Strong staining in a cell population reported as undetected, such as adipocytes. | HPA reports no detection in adipocytes (HPA: Not detected in adipocytes). Unexpected signal could reflect antibody cross-reactivity or endogenous chromogenic detection activity; it cannot establish CYP2C19 expression on its own. HPA also cautions that its staining antibodies target proteins from more than one gene (HPA tissue IHC). |
| Uniform color across cells and surrounding section, with little cell-type contrast. | A diffuse deposit lacks the hepatocyte-enriched distribution reported by HPA (HPA: High in hepatocytes). As a general IHC interpretation, consider nonspecific antibody binding, incomplete blocking, endogenous detection activity, or inadequate washing; compare the staining run with its negative detection control. |
| No detectable hepatocyte staining in a liver section. | This conflicts with the reported high hepatocyte staining (HPA: High in hepatocytes). As general IHC troubleshooting, check tissue preservation, retrieval, antibody and detection steps, and the counterstained section. A failed run should not be scored as biological absence without a working positive control. |
| Compartment and apparent texture | UniProt places CYP2C19 at endoplasmic reticulum and microsome membranes and annotates no transmembrane segment (UniProt P33261 topology). HPA describes cytoplasmic tissue staining (HPA tissue IHC). Score the broad compartment in chromogenic sections; do not claim organelle-level resolution from that pattern alone. |
| Tissue and cell selection | Liver hepatocytes offer the strongest reported positive comparison; duodenal glandular cells are medium, while adipocytes are reported undetected (HPA tissue IHC). Lower staining in stomach glandular cells, enterocytes of small intestine or colon, and gallbladder glandular cells may be less decisive (HPA tissue IHC). |
| Antibody evidence and specificity | HPA lists IHC support for HPA015066; HPA074424 has ICC support, with no IHC status listed (HPA antibodies). Tissue staining has Supported reliability with medium RNA agreement, and HPA cautions that antibodies target proteins from more than one gene (HPA tissue IHC). Interpret unexpected positives conservatively. |
| Antigen retrieval | No target-specific fixation or retrieval effect is supplied (UniProt P33261; HPA tissue IHC). Retrieval optimization is a general paraffin-section IHC workflow decision. Evaluate any chosen condition against a positive liver section and detection controls; do not infer a CYP2C19-specific sensitivity change from these sources. |
| ICC-IF evidence boundary | HPA describes mainly vesicular ICC-IF localization as uncertain and cautions that the antibodies can target proteins from multiple genes (HPA subcellular ICC-IF). That observation does not replace the cytoplasmic liver and duodenal pattern reported for tissue IHC (HPA tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| Liver positive control is blank or much weaker than expected. | A missed antibody or detection step, unsuitable retrieval, or a poorly preserved section may impair an IHC run; HPA provides no CYP2C19-specific fixation-effect evidence (HPA tissue IHC). | Repeat with a liver section and check the staining sequence, reagent activity, retrieval condition, and counterstain. Use the reported high hepatocyte signal as the comparison (HPA: High in hepatocytes). |
| Color is diffuse across the section or appears in the negative detection control. | General chromogenic IHC causes include endogenous enzyme activity, nonspecific binding, or insufficient washing. Diffuse color lacks the cell-selective pattern reported for CYP2C19 (HPA tissue IHC). | Review the detection control, apply the appropriate endogenous-activity block for the detection system, and optimize blocking and washes. Reassess whether hepatocytes stand out from background (HPA: High in hepatocytes). |
| Nuclei or cell surfaces dominate while cytoplasm remains unstained. | That distribution disagrees with cytoplasmic tissue staining and the endoplasmic reticulum or microsome location (HPA tissue IHC; UniProt P33261 subcellular location). | Inspect morphology and control sections, then review antibody and detection conditions. Withhold a positive CYP2C19 call until a reproducible cytoplasmic pattern appears in reported positive cells (HPA tissue IHC). |
| Strong staining appears in adipocytes or another HPA-undetected cell population. | Cross-reactivity or endogenous detection activity is possible. HPA reports adipocytes as undetected and warns that its staining antibodies can target proteins from more than one gene (HPA tissue IHC). | Compare with the detection control and hepatocyte positive control, then review antibody specificity before interpreting the new cell population as CYP2C19-positive (HPA: High in hepatocytes; Not detected in adipocytes). |
| Duodenal staining is weaker than liver staining. | This difference can match the reported pattern: duodenal glandular cells are Medium and hepatocytes are High (HPA tissue IHC). | Compare the correct cell types on well-preserved sections and score each against its reported level (HPA tissue IHC). Investigate a complete loss of liver signal as a run issue before treating weaker duodenal staining as failure. |
| Can this tissue IHC result serve as an ICC-IF localization guide? | HPA reports uncertain, mainly vesicular ICC-IF localization with a multiple-gene antibody caution; its tissue IHC report describes cytoplasmic staining in liver and small intestine (HPA subcellular ICC-IF; HPA tissue IHC). | Use the separate IF/ICC guide for that application. Treat vesicular fluorescence as uncertain and assess antibody specificity there; use hepatocyte cytoplasmic staining to judge this paraffin-section IHC result (HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data. Caution, targets protein from more than one gene.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Liver | Hepatocytes | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Endocrine cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot CYP2C19 staining by checking retrieval, cell identity and compartment before comparing signal intensity across paraffin sections.
Anti-CYP2C19 antibodies have IHC images from human, mouse, and rat paraffin sections (catalog IHC captions). A02102 also lists human IF (catalog applications/reactivity); no IF image is supplied (catalog IF image alts).
A02102-2 has IHC images from rat and mouse liver and human liver cancer paraffin sections (A02102-2 IHC captions); A02102 has a human gastric adenocarcinoma paraffin-section image and lists IF (A02102 IHC caption; catalog applications). M02102 and M02102-1 each have a human liver cancer paraffin-section IHC image (their respective IHC captions); both are mouse monoclonals (catalog host/clones).
Which to pick: For human tissue IHC, choose M02102 or M02102-1 if a monoclonal is preferred (catalog clones 10G5/5G4; respective human liver cancer IHC captions), or A02102 for its human gastric adenocarcinoma example (A02102 IHC caption). For human IF, A02102 is the listed option (catalog applications/reactivity); ICC validation and an IF image are unreported (catalog applications/IF image alts). For cross-species tissue IHC, A02102-2 has paraffin-section images from human, mouse, and rat samples (A02102-2 IHC captions); those captions do not report a fixative (A02102-2 IHC captions).