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- Table of Contents
Plan DAPK1 staining in paraffin sections using the catalog antibody at 2 μg/ml with chromogenic detection (datasheet A01161-1). Esophageal squamous cells provide an HPA high staining reference, while adipocytes provide an HPA undetected comparison (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in most tissues (HPA tissue IHC) | |
| Staining pattern | High cytoplasmic signal in esophageal squamous cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01161-1) | |
| Positive control | Esophagus+4 more · see all | |
| Negative control | Adipose tissue+3 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A01161-1) | |
| Caveat | Antibody staining and RNA show medium consistency (HPA tissue IHC) | |
| Regulation | Isoform 2 occurs in intestine and CRC (UniProt) | |
| Isoform / epitope | 4 isoforms; no extracellular domain; verify epitope coverage (UniProt) |
The catalog antibody protocol uses EDTA pH 8.0 retrieval (datasheet A01161-1). Published DAPK1 IHC protocols below cover liver cancer TMA and placental sections (PMC5520959; PMC5429897).
| Sample | Paraffin-embedded human colorectal adenocarcinoma tissue; fixative not specified (datasheet A01161-1) |
| Fixation | Image fixative and duration unreported (datasheet A01161-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01161-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01161-1) |
| Primary antibody | Rabbit anti-DAPK1, 2-5 μg/ml (datasheet A01161-1) |
| Primary incubation | Overnight at 4 °C (datasheet A01161-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A01161-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | DAPK1-positive staining in squamous epithelial cells of esophagus (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in most tissues. No signal in the no-primary control. |
DAPK1 is expected mainly in the cytoplasm, with cytoskeletal association; it has no transmembrane segment (UniProt P53355). In paraffin-section IHC, look for cytoplasmic staining in the cell types reported by HPA, including squamous epithelial cells and keratinocytes (HPA tissue IHC). HPA describes cytoplasmic expression in most tissues, but its tissue IHC reliability is Approved with medium consistency between antibody staining and RNA data (HPA tissue IHC).
| Cytoplasmic staining in esophageal or tonsillar squamous epithelial cells, or skin keratinocytes. | This matches HPA's reported high staining in those cells and its overall cytoplasmic tissue pattern (HPA tissue IHC). Compare cells within the section; a brown deposit alone does not establish that the stained cell is a reported positive cell type (standard IHC interpretation). |
| Predominantly nuclear staining, with little or no cytoplasmic staining. | A nuclear-only pattern does not match the cytoplasmic IHC profile (HPA tissue IHC; UniProt P53355). Review morphology, detection background and controls before calling it DAPK1; HPA's centrosome finding comes from ICC-IF and does not make nuclear-only IHC an expected result (HPA subcellular ICC-IF). |
| Strong staining in adipocytes, smooth muscle cells or hippocampal glial cells. | HPA reports DAPK1 as not detected in those specified cells (HPA tissue IHC). Check that the stained cells were identified correctly, then investigate cross-reactivity or detection activity. Treat discordance as a reason to validate the result, since HPA's tissue IHC and RNA data have medium consistency (HPA tissue IHC). |
| Diffuse brown haze across cells and surrounding tissue, without a clear cytoplasmic boundary. | A field-wide haze obscures the cell-based cytoplasmic pattern reported by HPA (HPA tissue IHC). Uneven blocking, excessive antibody or detection background are general IHC possibilities, not established DAPK1-specific effects (standard IHC practice). Interpret expression only after appropriate controls distinguish specific signal from background. |
| No detectable signal in a section containing a reported high-staining cell population. | Absence of staining in esophageal squamous epithelial cells, for example, conflicts with HPA's reported high level there (HPA tissue IHC). First verify that those cells are present and preserved; then assess the antibody, detection reagents and run controls (standard IHC practice). One failed section cannot establish biological absence. |
| Choice of comparison tissue and cell population | HPA reports high staining in esophageal and tonsillar squamous epithelium, nasopharyngeal respiratory epithelium, placental trophoblasts, skeletal myocytes, skin keratinocytes and vaginal squamous epithelium (HPA tissue IHC). Its not-detected calls are cell-specific: adipocytes, hippocampal glia, parathyroid glandular cells and smooth muscle cells (HPA tissue IHC). Score the named cells, not an entire tissue as uniformly positive or negative. |
| Strength of the HPA evidence | The tissue IHC profile is Approved, with medium consistency against RNA expression data (HPA tissue IHC). HPA lists IHC Approved status for HPA040472, HPA048436 and CAB037302; HPA003516 has no listed IHC status in the supplied antibody record (HPA antibodies). These statuses support comparison with the reported pattern but do not prove specificity in every section. |
| Isoforms and epitope coverage | UniProt lists four DAPK1 isoforms and reports isoform 2 in normal intestinal tissue and colorectal carcinomas (UniProt P53355). The supplied record gives no antibody epitope or isoform coverage. An unexpected intestinal result therefore cannot be assigned to an isoform from this evidence alone; check the chosen antibody's stated epitope before making an isoform-specific interpretation. |
| Topology and processing | UniProt reports no transmembrane segment, signal peptide or propeptide, and identifies one DAPK1 chain spanning residues 1–1430 (UniProt P53355). This supports a cellular, mainly cytoplasmic interpretation alongside the tissue IHC profile (HPA tissue IHC). It supplies no basis for predicting staining in a membrane compartment or a shed extracellular product. |
| Q: What should IF/ICC show? | A: HPA reports the centrosome as the approved main ICC-IF location and lists images from A-549, HaCaT, U2OS, A-431 and U-251MG cells (HPA subcellular ICC-IF). UniProt also reports cytoplasmic and cytoskeletal localization (UniProt P53355). Interpret this as an application-specific observation; it does not replace the cytoplasmic tissue IHC expectation (HPA tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| Reported high-staining cells are present, but the section has no signal. | A failed staining run or unsuitable antibody conditions are possible (standard IHC practice); HPA reports high staining in several defined cell populations (HPA tissue IHC). | Confirm the cell identity, then check a known-positive section in the same run, antibody handling and detection reagents (standard IHC practice). If controls fail, repeat the run before scoring DAPK1 absent. |
| Expected cytoplasmic staining is weak or hard to separate from counterstain. | Suboptimal staining or detection settings may reduce contrast (standard IHC practice). HPA reports a cytoplasmic tissue profile but supplies no target-specific fixation or retrieval effect (HPA tissue IHC). | Compare the positive control and background together. Review the chosen antibody's IHC-P instructions for dilution and antigen retrieval, and adjust one general workflow variable at a time (standard IHC practice). Do not infer a DAPK1-specific retrieval requirement from HPA staining levels. |
| The strongest signal is nuclear rather than cytoplasmic. | The compartment disagrees with UniProt's cytoplasmic localization and HPA's tissue IHC profile (UniProt P53355; HPA tissue IHC). Nonspecific staining or scoring error remains possible (standard IHC interpretation). | Recheck the nucleus against the counterstain, inspect positive and negative controls, and confirm whether cytoplasm is also stained. Withhold a positive DAPK1 call if the pattern remains nuclear-only. |
| Adipocytes or smooth muscle cells stain as strongly as the proposed positive cells. | Those specified cells are reported as not detected (HPA tissue IHC). Cell misidentification, cross-reactivity or detection background could explain the mismatch (standard IHC interpretation). | Verify cell identity on the section and compare with reported high-staining cells processed in the same run (HPA tissue IHC). Check negative detection controls; investigate persistent discordance before using those cells as evidence of DAPK1 expression. |
| Brown staining spreads across the section, including areas without a clear cellular pattern. | Diffuse detection background can mask specific cytoplasmic staining (standard IHC practice); it does not resemble HPA's described cell-based profile (HPA tissue IHC). | Inspect reagent-only controls, blocking and wash steps, and the detection system (standard IHC practice). Reduce background and reassess staining within identifiable cells before comparing intensity across tissues. |
| A low-staining cell population is scored as equivalent to a high-staining one. | HPA reports low staining in cerebral cortex endothelial cells and rectal glandular cells, while skin keratinocytes are high (HPA tissue IHC). Section-to-section intensity alone can mislead without matched processing and controls (standard IHC interpretation). | Compare the named cell populations using consistent staining and imaging conditions, record cytoplasmic signal relative to local background, and keep HPA's medium IHC–RNA consistency in view (HPA tissue IHC). Avoid converting an intensity difference into an absolute expression claim. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Esophagus | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Nasopharynx | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Placenta | Trophoblastic cells | High | Protein (IHC) | HPA → |
| Skeletal muscle | Myocytes | High | Protein (IHC) | HPA → |
| Skin | Keratinocytes | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Not detected | Protein (IHC) | HPA → |
| Parathyroid gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Smooth muscle | Smooth muscle cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot DAPK1 staining in paraffin sections by checking retrieval, cell type, subcellular pattern, and controls before comparing staining intensity.
IHC images show DAPK1 staining in human paraffin sections; an IF image shows staining in HeLa cells (A01161-1 and M01161 image captions). Both antibodies list Human, Mouse, and Rat reactivity (catalog).
A01161-1 has IHC images from human colorectal adenocarcinoma, liver cancer, and lung cancer paraffin sections (A01161-1 IHC captions). M01161 has an IHC image from a human breast cancer paraffin section and an IF image from HeLa cells (M01161 image captions).
Which to pick: Choose A01161-1 for paraffin-section IHC when a documented starting workflow is useful: its human tissue captions specify EDTA retrieval at pH 8.0 and 2 μg/ml primary antibody; the fixative is unreported (A01161-1 IHC captions). Choose M01161 for IF/ICC because it is a rabbit monoclonal listed for both applications, with a HeLa-cell IF image; its IHC caption supports paraffin sections but does not report the fixative (M01161 catalog; M01161 image captions). For cross-species planning, both SKUs list Human, Mouse, and Rat reactivity, while their pictured IHC examples are human tissue (catalog reactivity; IHC captions).