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- Table of Contents
Plan DOCK1 chromogenic IHC on paraffin sections with 2–5 μg/ml primary antibody (datasheet A03440-2). Compare cytoplasmic staining in breast glandular cells, where signal is high, with adrenal glandular cells, where it is undetected (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in several cell types (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic signal across several cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A03440-2) | |
| Positive control | Breast+4 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Signal varies by cell type; some are undetected (HPA tissue IHC) | |
| Regulation | No specific regulator reported (UniProt) | |
| Isoform / epitope | No listed isoforms; one 1–1865 chain (UniProt) |
The catalog antibody’s EDTA retrieval protocol (datasheet A03440-2) and a published endometrial tissue IHC protocol (PMC10913561) provide starting conditions for chromogenic DOCK1 staining.
| Sample | Paraffin-embedded human colorectal adenocarcinoma tissue; fixative not specified (datasheet A03440-2) |
| Fixation | Image fixative and duration unreported (datasheet A03440-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A03440-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03440-2) |
| Primary antibody | Rabbit anti-DOCK1, 2-5 μg/ml (datasheet A03440-2) |
| Primary incubation | Overnight at 4 °C (datasheet A03440-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A03440-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | DOCK1-positive staining in glandular cells of breast (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in several cell types. No signal in the no-primary control. |
In paraffin-section IHC, expect DOCK1 chiefly in the cytoplasm of several cell types, including breast and thyroid glandular cells and tonsillar squamous epithelial cells (HPA tissue IHC: Approved; pending external verification). UniProt places DOCK1 in the cytoplasm and at membranes, with recruitment linked to phosphatidylinositol 3,4,5-trisphosphate; it has no transmembrane segment (UniProt Q14185: subcellular location and topology).
| Cytoplasmic staining in breast or thyroid glandular cells, or tonsillar squamous epithelial cells. | This matches cell types scored High by HPA tissue IHC (HPA: High in those cells). Compare stained cells with the section's morphology; tissue-wide colour alone cannot establish the expected cell pattern (general IHC interpretation). |
| Predominantly nuclear staining in an IHC section, with little cytoplasmic signal. | Check for artefact or nonspecific staining against the cytoplasmic tissue IHC profile (HPA tissue IHC). Nuclear signal is not inherently impossible: HPA reports approved nucleoplasmic localisation in ICC-IF, a different application (HPA subcellular ICC-IF). |
| Strong staining in a cell population reported as not detected, such as lymph-node germinal center cells. | This conflicts with the reported IHC pattern for that cell population (HPA: Not detected in lymph-node germinal center cells). Consider cross-reactivity or endogenous chromogen-generating activity; neither can be assigned from the slide alone (general IHC practice). |
| Diffuse colour across cells and extracellular spaces, obscuring boundaries. | Treat the pattern as background until controls separate specific cellular staining from nonspecific antibody binding or endogenous detection activity (general IHC practice). HPA describes cytoplasmic expression in several cell types, rather than a diffuse tissue-level readout (HPA tissue IHC). |
| No staining in a breast, thyroid or tonsil section with suitable target cells. | A missing signal warrants a technical check because HPA scores the specified cell populations High (HPA tissue IHC). HPA's IHC status is Approved with external verification pending, so a negative result alone does not establish absence of DOCK1 (HPA: reliability). |
| Compartment and membrane recruitment | The tissue IHC profile is cytoplasmic (HPA tissue IHC). UniProt also lists membrane localisation through phosphatidylinositol 3,4,5-trisphosphate interaction and no transmembrane segment (UniProt Q14185). Assess any edge staining in the context of a cellular pattern; membrane staining is not a required positive-call criterion from these IHC data. |
| Cell-specific tissue distribution | HPA scores bronchial respiratory epithelial cells, caudate glial cells and glandular cells in cervix, duodenum and endometrium Medium, while several other populations are Low or Not detected (HPA tissue IHC). Select and score the named cell population, since a tissue label alone does not predict uniform staining. |
| Antibody validation scope | HPA lists IHC as Approved for HPA048692 and CAB004378; neither entry is labelled Enhanced in the supplied record (HPA antibodies). The tissue profile's reliability is Approved with external verification pending (HPA tissue IHC). Treat a conflicting slide as a result to investigate, rather than as definitive proof that either profile is wrong. |
| IF/ICC Q: Should its localisation match paraffin IHC? | A: HPA reports approved nucleoplasm and cytosol as main ICC-IF locations, plus nucleoli, plasma membrane, actin filaments and focal adhesions as additional locations (HPA subcellular ICC-IF). These observations inform interpretation; the supplied IHC tissue profile remains cytoplasmic (HPA tissue IHC). |
| Processing and epitope scope | UniProt lists one chain spanning residues 1–1865, no signal peptide or propeptide, and no annotated isoforms (UniProt Q14185). These facts do not identify the epitope of a chosen antibody or establish a DOCK1-specific antigen-retrieval or fixation response. |
| Situation | Likely cause | Next action |
|---|---|---|
| A High-scored target cell population is unstained. | Possible failure in staining or detection; the absence conflicts with HPA's breast, thyroid or tonsil scores (HPA tissue IHC; general IHC practice). | Check that the expected cells are present, then review the antibody's IHC validation, retrieval, primary incubation and detection controls (HPA antibodies; general IHC practice). Do not infer DOCK1-specific fixation sensitivity from these sources. |
| Nuclei dominate the IHC signal. | This departs from HPA's cytoplasmic tissue IHC profile, although nucleoplasm is an approved ICC-IF location (HPA tissue IHC; HPA subcellular ICC-IF). | Review morphology and a primary-omission control for detection background; assess whether cytoplasmic staining remains in the named positive cells (general IHC practice; HPA tissue IHC). |
| A reported Not detected cell population stains strongly. | The result differs from its HPA IHC score; antibody cross-reactivity or endogenous detection activity are possible technical causes (HPA tissue IHC; general IHC practice). | Confirm cell identity on the counterstained section and compare a primary-omission control; interpret a persistent primary-dependent signal cautiously (general IHC practice). |
| Colour spreads beyond cell outlines. | Diffuse chromogen can reflect nonspecific binding or endogenous detection activity rather than the reported cellular pattern (general IHC practice; HPA tissue IHC). | Compare a primary-omission control, review blocking and washing, and score only signal assignable to identifiable cells (general IHC practice). |
| Only faint staining appears in an HPA Medium or Low population. | A weaker signal may accord with that population's reported level; HPA scores vary by cell type (HPA tissue IHC). | Compare the correct cell population with a High-scored control section processed in the same run before calling the faint result a failed stain (HPA tissue IHC; general IHC practice). |
| An IHC result is being compared with an ICC-IF image. | HPA reports a cytoplasmic tissue IHC profile and approved nucleoplasmic and cytosolic main ICC-IF locations (HPA tissue IHC; HPA subcellular ICC-IF). | Interpret each result within its application and cell context; use the tissue IHC cell scores for the paraffin-section positive call (HPA tissue IHC; general IHC interpretation). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Thyroid gland | Glandular cells | High | Protein (IHC) | HPA → |
| Tonsil | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Caudate | Glial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | Not detected | Protein (IHC) | HPA → |
| Rectum | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Skeletal muscle | Myocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot DOCK1 staining in paraffin section IHC using the catalog antibody’s tissue example and compartment and cell type controls.
A03440-2 has IHC images from human paraffin sections of colorectal and lung adenocarcinoma, plus IF images from human paraffin sections of esophageal squamous cell carcinoma and intestinal cancer (catalog image captions).
A03440-2 is listed for human IHC and IF (catalog applications and reactivity). Its IHC images show colorectal and lung adenocarcinoma sections; its IF images show esophageal squamous cell carcinoma and intestinal cancer sections (catalog image captions).
Which to pick: Choose A03440-2 for human paraffin-section IHC; its captions document EDTA retrieval at pH 8.0 and primary antibody at 2 μg/ml, but do not report the fixative (catalog IHC image captions). For IF, A03440-2 has human paraffin-section images at 5 μg/ml; ICC validation and clonality are unreported (catalog IF image captions; catalog applications and clone field). No cross-species option is documented here because A03440-2 lists human reactivity only (catalog reactivity).