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- Table of Contents
Plan GNAQ paraffin IHC using the variable cytoplasmic and membranous tissue pattern reported by HPA (HPA tissue IHC). Start with the catalog antibody’s 0.5–1 μg/mL IHC range (datasheet: PB9707), and interpret staining cautiously because antibody staining and RNA expression show low consistency (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and membranous tissue staining (HPA tissue IHC) | |
| Staining pattern | Variable cytoplasmic and membranous staining across tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB9707) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation conditions consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Low agreement between staining and RNA; possible cross-gene signal (HPA tissue IHC) | |
| Regulation | Reduced in RA peripheral blood lymphocytes (UniProt) | |
| Isoform / epitope | No listed isoforms; one full-length chain (UniProt) |
The catalog antibody uses EDTA pH 8.0 retrieval (datasheet PB9707). The published IHC protocols below cover sheep reproductive tissues, skin, and hen uterovaginal junction (PMC5088417; PMC10392076; PMC8082553).
| Sample | Paraffin-embedded rat ovary tissue; fixative not specified (datasheet PB9707) |
| Fixation | Image fixative and duration unreported (datasheet PB9707); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB9707); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9707) |
| Primary antibody | Rabbit anti-GNAQ, 0.5-1μg/ml (datasheet PB9707) |
| Primary incubation | Overnight at 4 °C (datasheet PB9707) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9707) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GNAQ-positive staining in glandular cells of appendix (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic and membranous expression at variable levels in several tissues. No signal in the no-primary control. |
GNAQ is a lipid-anchored protein associated with the plasma membrane, with Golgi and nuclear locations also annotated; it has no transmembrane segment (UniProt P50148 topology). In paraffin-section IHC, expect variable cytoplasmic and membranous staining, including in colon and prostate glandular cells (HPA: tissue IHC). Interpret this pattern cautiously: HPA rates the tissue staining Uncertain because antibody staining and RNA expression have low consistency, and the antibody may recognize proteins from more than one gene (HPA: tissue IHC reliability).
| Membranous and cytoplasmic staining in colon or prostate glandular cells, with moderate signal. | This matches the reported compartment pattern and the Medium staining recorded for those cells (HPA: tissue IHC). It is a useful expected result, but HPA's Uncertain reliability means morphology alone does not establish GNAQ specificity (HPA: tissue IHC reliability). |
| Strong, uniform nuclear staining dominates while membranous and cytoplasmic staining is absent. | This departs from the reported tissue IHC pattern (HPA: tissue IHC). Check for detection artefact before scoring it as GNAQ; nuclear and nuclear-membrane locations are annotated by UniProt, so nuclear signal alone is not proof of an artefact (UniProt P50148 subcellular location). |
| Comparable staining appears in glandular cells and nearby cells expected to be unstained. | A pattern spanning unrelated cell types may reflect cross-reactivity or endogenous detection activity (standard IHC practice). HPA reports adipocytes and bone-marrow hematopoietic cells as Not detected, but its IHC reliability is Uncertain; use matched negative controls before assigning identity (HPA: tissue IHC). |
| Pale, diffuse color covers tissue, stroma, and empty areas without clear cell boundaries. | Treat this as background rather than a scored localization pattern (standard IHC practice). Review the no-primary control and detection reagents; genuine tissue staining is described as cytoplasmic and membranous at variable levels (HPA: tissue IHC). |
| No staining is visible in colon or prostate glandular cells on the run. | Both are reported at Medium intensity, so an absent signal calls for a run-level check of antigen retrieval, antibody incubation, detection, and a known-positive control (HPA: tissue IHC; standard IHC practice). A single negative section cannot establish absence of GNAQ. |
| Membrane association and compartment | GNAQ has no transmembrane segment and is associated with the plasma membrane by a lipid anchor (UniProt P50148 topology and subcellular location). Assess membrane-associated signal alongside cytoplasmic staining; HPA reports both in tissue IHC (HPA: tissue IHC). |
| Choice of positive and comparison cells | Colon and prostate glandular cells are Medium, whereas adipocytes and bone-marrow hematopoietic cells are Not detected in HPA tissue IHC (HPA: tissue IHC). Compare defined cell populations within correctly identified sections; these observations are provisional because HPA rates the IHC evidence Uncertain (HPA: reliability). |
| Antibody-specific confidence | HPA lists IHC status as Uncertain for HPA048886 and CAB010036 and warns that the tissue-staining antibody may target protein from more than one gene (HPA: antibodies; HPA: tissue IHC reliability). Confirm an unexpected pattern with an independent specificity control before interpreting it as GNAQ. |
| Processing and isoform expectations | The supplied UniProt record lists one 1–359 chain, no signal peptide or propeptide, and no reported isoforms (UniProt P50148 processing and isoforms). These annotations give no basis for predicting a secreted or shed staining pattern; use the reported cellular locations when interpreting the slide (UniProt P50148 subcellular location). |
| IF/ICC Q: Should the IHC pattern appear identically in IF/ICC? | A: No identical pattern is established. HPA ICC-IF reports supported plasma-membrane localization, with nuclear speckles and cytosol marked uncertain; images are listed for A-431, MCF-7, and U2OS (HPA: subcellular). Interpret IF/ICC on its own guide page; this section provides no IF/ICC protocol. |
| Detection-system background | Endogenous enzyme activity or nonspecific detection can produce color unrelated to primary-antibody binding (standard IHC practice). Judge diffuse signal against a no-primary control and use the detection system's appropriate blocking step when background is present (standard IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| Colon or prostate glandular cells are blank. | The run may have insufficient detectable signal; both cell populations are reported at Medium staining (HPA: tissue IHC). | Check a known-positive section, then review antigen retrieval, primary-antibody incubation, and detection controls using the IHC-validated antibody's instructions (standard IHC practice). Do not infer a GNAQ-specific fixation effect. |
| All tissue regions develop diffuse chromogen. | Background may arise from endogenous detection activity or nonspecific reagent binding (standard IHC practice). | Inspect the no-primary control, review blocking and washes, and score only cell-associated signal with interpretable morphology (standard IHC practice). |
| Unexpected cells stain as strongly as expected glandular cells. | Cross-reactivity is plausible because HPA cautions that the tissue-staining antibody may target more than one gene (HPA: tissue IHC reliability). | Compare the same cell type in a reported Not detected tissue, where available, and seek independent specificity evidence before calling the unexpected signal GNAQ (HPA: tissue IHC; standard IHC practice). |
| Predominantly nuclear signal appears without membrane or cytoplasmic staining. | It differs from the HPA tissue IHC profile, although UniProt also annotates nuclear locations (HPA: tissue IHC; UniProt P50148 subcellular location). | Review a no-primary control and an expected-positive tissue; withhold a compartment-specific conclusion until the signal is reproducible and antibody specificity is supported (standard IHC practice). |
| Membrane signal is weak but cytoplasmic signal remains visible. | HPA reports variable levels of cytoplasmic and membranous expression; an individual section need not show equal prominence in both compartments (HPA: tissue IHC). | Check cell boundaries and compare the expected-positive control under the same staining conditions before scoring membrane localization (standard IHC practice). |
| A negative comparison tissue shows no staining, but the positive control also fails. | A failed positive control leaves the negative result uninterpretable (standard IHC practice). | Repeat or resolve the IHC run before using absence of color as evidence; HPA's Not detected categories are observational and its tissue IHC reliability is Uncertain (HPA: tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Uncertain — Low consistency between antibody staining and RNA expression data. Caution, targets protein from more than one gene. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Caudate | Glial cells | Medium | Protein (IHC) | HPA → |
| Cerebellum | Purkinje cells | Medium | Protein (IHC) | HPA → |
| Colon | Glandular cells | Medium | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | Low | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot chromogenic GNAQ IHC in paraffin sections using the catalog antibody’s tissue example, while treating uncertain atlas staining as a validation concern.
The catalog shows GNAQ IHC in paraffin sections from human, mouse and rat tissues, plus IF in A431 cells and an unnamed sample (catalog image captions).
PB9707 shows IHC in rat ovary, mouse testis and human prostatic cancer, plus IF in A431 cells (PB9707 image captions). M00898 shows IHC in human ovarian cancer and mouse testis (M00898 image captions); M00898-1 shows IF at 1:50, with no sample identified (M00898-1 IF image caption).
Which to pick: For tissue IHC, choose M00898 for its human ovarian cancer and mouse testis examples, or PB9707 for its rat ovary, mouse testis and human prostatic cancer examples (respective IHC image captions). Both IHC captions describe paraffin sections; the fixative is unreported (respective IHC image captions). For IF/ICC, PB9707 has an A431-cell example at 2 μg/ml (PB9707 IF image caption), while M00898-1 lists IF/ICC and shows IF at 1:50 without identifying the sample (M00898-1 applications and IF image caption). For the broadest stated species reactivity, choose mouse monoclonal M00898, which lists human, monkey, mouse and rat; rabbit PB9707 and rabbit monoclonal M00898-1 list human, mouse and rat (catalog host, clone and reactivity fields).