This website uses cookies to ensure you get the best experience on our website.
- Table of Contents
Plan chromogenic GOLM1 IHC in paraffin sections using its granular cytoplasmic tissue pattern (HPA tissue IHC). Select glandular tissue controls and assess staining by cell type (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Observed granular cytoplasm (HPA tissue IHC); cis-Golgi expected (UniProt) | |
| Staining pattern | Granular cytoplasm in most tissues, including glandular cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A02975-3) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Lumenal pH disruption can redistribute GOLM1 via endosomes (UniProt) | |
| Regulation | HBV/HCV infection raises liver expression (UniProt) | |
| Isoform / epitope | 2 isoforms; check epitopes against cytoplasmic and lumenal regions (UniProt) |
The catalog antibody protocol uses EDTA pH 8.0 retrieval (datasheet: A02975-3). Two published GOLM1 IHC protocols provide prostate and head and neck tissue examples (PMC10071148; PMC9737887).
| Sample | Paraffin-embedded human esophageal squamous carcinoma tissue; fixative not specified (datasheet A02975-3) |
| Fixation | Image fixative and duration unreported (datasheet A02975-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A02975-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02975-3) |
| Primary antibody | Rabbit anti-GOLM1, 2-5μg/ml (datasheet A02975-3) |
| Primary incubation | Overnight at 4 °C (datasheet A02975-3) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A02975-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GOLM1-positive staining in glandular cells of appendix (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression with a granular pattern in most tissues. No signal in the no-primary control. |
GOLM1 is an early Golgi membrane protein with a short cytoplasmic segment and a lumenal region (UniProt Q8NBJ4 topology). In paraffin-section IHC, expect granular cytoplasmic staining, especially in glandular epithelium and kidney distal tubules (HPA tissue IHC). HPA rates the tissue pattern Enhanced, based on agreement between staining and RNA expression (HPA tissue IHC).
| Granular cytoplasmic staining in stomach or prostate glandular cells, or kidney distal tubules (HPA tissue IHC). | This fits the expected epithelial pattern: HPA reports High staining in those cells (HPA tissue IHC). A granular cytoplasmic readout is compatible with Golgi localization, although chromogenic IHC alone does not prove that individual granules are Golgi structures (HPA tissue IHC; UniProt Q8NBJ4 subcellular location; general IHC practice). |
| Predominantly nuclear staining, with little granular cytoplasmic signal (HPA tissue IHC expected pattern). | Treat this as a compartment mismatch: HPA describes granular cytoplasmic IHC and Golgi ICC-IF localization (HPA tissue IHC; HPA subcellular). Review antibody specificity and slide controls before scoring it as GOLM1; an unexpected compartment alone does not identify the artefact’s cause (general IHC practice). |
| Strong staining in a cell population HPA lists as not detected, such as adipocytes or cardiomyocytes (HPA tissue IHC). | This conflicts with the reported baseline pattern (HPA tissue IHC). Consider cross-reactivity or endogenous detection activity, and compare with a control lacking primary antibody (general IHC practice). Cell identity and tissue context matter: a result for one population should not be generalized to every cell in its organ (HPA tissue IHC). |
| Uniform color across cells and extracellular areas, obscuring granules (HPA tissue IHC expected pattern). | Diffuse background limits interpretation of the expected granular cytoplasmic pattern (HPA tissue IHC; general IHC practice). Compare background with a no-primary control, then review blocking, washes, antibody concentration and detection conditions; the slide appearance alone does not isolate one cause (general IHC practice). |
| No staining in stomach glandular cells or kidney distal tubules (HPA tissue IHC). | These are reported High IHC populations, so an entirely blank result warrants a workflow check (HPA tissue IHC; general IHC practice). Confirm the relevant cells are present and inspect the antibody, retrieval and detection controls before interpreting absence as biological (general IHC practice). |
| Subcellular context | GOLM1 occupies the cis-Golgi network membrane, with residues 1–12 cytoplasmic and 36–401 lumenal (UniProt Q8NBJ4 topology). This supports a Golgi-associated interpretation of granular cytoplasmic staining, without specifying where this antibody binds (HPA tissue IHC; general IHC practice). |
| Positive and comparison tissues | HPA reports High staining in stomach and prostate glandular cells and kidney distal tubules; it reports adipocytes and cardiomyocytes as Not detected (HPA tissue IHC). Compare the named cell populations, since whole-section staining can contain other cells (general IHC practice). |
| Liver context | UniProt describes low expression in normal liver, constitutive biliary epithelial expression and increased expression in virus-infected liver (UniProt Q8NBJ4 tissue specificity). Record biliary cells and hepatocytes separately; liver disease context can change the expected hepatocyte result (UniProt Q8NBJ4 tissue specificity). |
| Antibody evidence | Three listed antibodies have Enhanced HPA IHC status: HPA010638, HPA011929 and CAB015341 (HPA antibodies). This supports the reported tissue pattern but does not establish the specificity or optimal conditions of a different antibody (HPA antibodies; general IHC practice). |
| Molecular features | UniProt lists 2 isoforms and glycosylation sites at residues 109, 144 and 398 (UniProt Q8NBJ4). Without an antibody epitope or target-specific retrieval data, these annotations do not predict a change in IHC staining after processing (UniProt Q8NBJ4; general IHC practice). |
| IF/ICC Q: What localization should appear? | A: Golgi localization is the HPA ICC-IF result, rated Enhanced; images are listed for A-431, U-251MG and U2OS (HPA subcellular; HPA antibodies). That observation helps interpret compartment, but does not supply an IF/ICC protocol or establish the IHC intensity of those cell lines (HPA subcellular; general IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| A reported High control population is blank (HPA tissue IHC). | The cell population may be absent from the viewed area, or an IHC step may have failed; the blank result does not distinguish these possibilities (general IHC practice). | Locate the named cells, then check a working slide control, antibody application, retrieval record and detection reagents (general IHC practice). No GOLM1-specific retrieval condition is supplied (UniProt Q8NBJ4; HPA tissue IHC). |
| Granules are obscured by diffuse chromogen (HPA tissue IHC expected pattern). | Excess background can arise from antibody or detection conditions; appearance alone cannot assign the cause (general IHC practice). | Compare a no-primary control and review blocking, washes, dilution and chromogen development one variable at a time (general IHC practice). |
| The dominant signal is nuclear (HPA tissue IHC expected pattern). | Nuclear staining conflicts with the reported Golgi and granular cytoplasmic locations (HPA subcellular; HPA tissue IHC). | Check the positive tissue and no-primary controls; assess whether the signal persists with an independently validated antibody where available (HPA antibodies; general IHC practice). |
| Adipocytes or cardiomyocytes stain strongly (HPA tissue IHC). | HPA lists those cell populations as Not detected; cross-reactivity or endogenous detection activity is possible (HPA tissue IHC; general IHC practice). | Verify cell identity and inspect the no-primary control before assigning the staining to GOLM1 (general IHC practice). |
| A normal liver section shows biliary staining but little hepatocyte signal (UniProt Q8NBJ4 tissue specificity). | That distribution accords with constitutive biliary expression and low normal-liver expression (UniProt Q8NBJ4 tissue specificity). | Score biliary cells and hepatocytes separately, and document whether the section is normal or from virus-infected liver (UniProt Q8NBJ4 tissue specificity; general IHC practice). |
| A glandular positive control stains unevenly (HPA tissue IHC). | Section quality, cell distribution or uneven reagent coverage may contribute; the pattern alone does not establish which (general IHC practice). | Compare intact glandular areas on the same slide, inspect section coverage and repeat with controls if the result remains uninterpretable (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Endometrium | Glandular cells | High | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
| Kidney | Distal tubules | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | Not detected | Protein (IHC) | HPA → |
Use the catalog antibody’s paraffin-section evidence and the expected Golgi pattern to troubleshoot GOLM1 chromogenic IHC (datasheet A02975-3; UniProt Q8NBJ4 topology).
IHC data cover human paraffin sections and rat brain tissue; IF data cover A431 cells and rat brain tissue (catalog image captions). Both antibodies list human, mouse and rat reactivity (catalog applications/reactivity).
A02975-3 will render with human esophageal squamous carcinoma paraffin-section IHC; its separate IF image uses A431 cells (A02975-3 image captions). A02975 will render with rat brain IHC and also has a rat brain IF image (A02975 image captions).
Which to pick: For human paraffin-section IHC, choose A02975-3: its image documents that preparation and 2 μg/mL primary antibody (A02975-3 IHC caption); the fixative is unreported (A02975-3 IHC caption). For cell IF/ICC, A02975-3 has an A431 cell image at 5 μg/mL (A02975-3 IF caption); A02975 also has a rat brain IF image at 20 μg/mL (A02975 IF caption). For rat tissue IHC, choose A02975, which has a rat brain IHC image at 2.5 μg/mL (A02975 IHC caption); both list mouse reactivity, but neither supplied IHC image documents a mouse sample (catalog reactivity and IHC image captions).