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- Table of Contents
Plan chromogenic paraffin IHC around selective erythrocyte staining (HPA tissue IHC) and expected membrane localization (UniProt). This guide covers fixation consistency, epitope placement, and interpretation of kidney distal tubule staining (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Erythrocyte membrane expected (UniProt) | |
| Staining pattern | Selective erythrocyte staining; compartment unresolved (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A02184-2) | |
| Positive control | Bone marrow+1 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep formalin fixation consistent across paraffin sections. (standard IHC practice; not target-specific) | |
| Caveat | Kidney distal tubules also show medium staining (HPA tissue IHC) | |
| Regulation | Expression regulation not specified (UniProt) | |
| Isoform / epitope | 3 isoforms; check extracellular vs cytoplasmic epitope (UniProt) |
The catalog antibody’s IHC-P protocol is followed by published GYPA staining methods for placenta, mouse choroid plexus, fetal tissues, and hepatocellular carcinoma (PMC8036899; PMC3310074; PMC7780123; PMC11106372).
| Sample | Paraffin-embedded human liver cancer tissues; fixative not specified (datasheet A02184-2) |
| Fixation | Image fixative and duration unreported (datasheet A02184-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A02184-2) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02184-2) |
| Primary antibody | Rabbit anti-GYPA, 1μg/ml (datasheet A02184-2) |
| Primary incubation | Overnight at 4 °C (datasheet A02184-2) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A02184-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GYPA-positive staining in hematopoietic cells of bone marrow (HPA tissue IHC: Medium). HPA tissue profile: Selective expression in erythrocytes. No signal in the no-primary control. |
GYPA is an erythrocyte membrane protein with an extracellular segment at residues 20–91 and a transmembrane segment at 92–114 (UniProt P02724 topology/function). In paraffin-section IHC, expect staining associated with erythrocytes; HPA describes the tissue profile as selective for erythrocytes and rates its IHC evidence Enhanced (HPA tissue IHC). Interpret other stained structures against HPA's cell-level observations, including marrow hematopoietic cells and kidney distal tubules (HPA tissue IHC).
| Crisp staining outlines erythrocytes, with little signal in surrounding cells. | This fits GYPA's role as a major erythrocyte membrane protein and its cell-membrane location (UniProt P02724 function/subcellular). HPA calls the tissue profile selective for erythrocytes (HPA tissue IHC). Judge the result by cell identity and membrane association as well as chromogen intensity; a dark deposit alone does not identify its source (general IHC practice). |
| Medium staining appears among bone-marrow hematopoietic cells, or in kidney distal tubules. | Both are recorded observations: bone-marrow hematopoietic cells and kidney distal tubules are listed at Medium staining (HPA tissue IHC). HPA's overall erythrocyte-selective profile does not erase the distal-tubule entry. Review the image and local morphology before treating kidney staining as either confirmed GYPA expression or an artefact (HPA tissue IHC; general IHC practice). |
| Nuclear or diffuse cytoplasmic staining dominates the tissue section. | That distribution is discordant with UniProt's cell-membrane assignment and the erythrocyte-selective tissue profile (UniProt P02724 subcellular; HPA tissue IHC). HPA separately reports nucleoplasm and cytosol in ICC-IF, so those cell-line observations should not be used to validate a dominant nuclear IHC pattern in tissue (HPA subcellular ICC-IF). Check controls and morphology before calling it GYPA (general IHC practice). |
| Strong stain appears in unrelated cells or across an HPA-listed negative compartment. | Cross-reactivity or endogenous detection activity is possible when signal does not follow the expected cell and compartment pattern (general IHC practice). HPA lists adipocytes in adipose tissue and respiratory epithelial cells in bronchus as Not detected; these are compartment-level comparisons, not claims that every cell in those sections must be unstained (HPA tissue IHC). |
| The known-positive area is blank, or faint colour covers nearly the whole slide. | A blank erythrocyte-rich area leaves the staining run uninterpretable until a positive control works (UniProt P02724 function; general IHC practice). Broad colour without cell boundaries suggests background rather than the selective tissue pattern described by HPA (HPA tissue IHC; general IHC practice). Evaluate the positive and negative controls, tissue preservation and detection run before assigning biological absence (general IHC practice). |
| Epitope location | The mature chain spans residues 20–150, including an extracellular region at 20–91 and cytoplasmic region at 115–150 (UniProt P02724 processing/topology). Interpret staining and any retrieval comparison in light of the antibody's documented epitope, if available; the supplied record does not identify that epitope (general IHC practice). |
| Extracellular glycosylation | UniProt annotates 17 glycosylation sites within residues 21–69 (UniProt P02724 glycosylation/topology). This locates many modifications on the extracellular segment, but the record does not show whether they alter this antibody's IHC recognition; avoid predicting a staining gain or loss from glycosylation alone (UniProt P02724 glycosylation; general IHC practice). |
| Tissue-specific interpretation | HPA rates tissue IHC evidence Enhanced and describes selective erythrocyte expression, yet also lists Medium staining in kidney distal tubules and marrow hematopoietic cells (HPA tissue IHC). Keep those observations distinct when selecting a positive area or investigating an unexpected cell type; HPA also flags stained structures that were not annotated (HPA tissue IHC). |
| Assay and antibody context | The listed mouse monoclonal has Enhanced IHC validation; the rabbit polyclonal has Supported IHC validation (HPA antibodies). HPA's ICC-IF summary additionally includes plasma membrane, nucleoplasm and cytosol, with HEL among imaged lines (HPA subcellular ICC-IF). Those IF locations describe a different assay context and do not define an IHC-P protocol (HPA subcellular ICC-IF; general IHC practice). |
| Isoforms and retrieval evidence | UniProt lists 3 isoforms but supplies no isoform-specific staining pattern here (UniProt P02724 isoforms). The supplied sources give no target-specific fixation sensitivity or antigen-retrieval result, so choose and assess IHC-P retrieval using the antibody's validated procedure and run controls, without attributing an observed change to GYPA chemistry (general IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| No erythrocyte staining in a section expected to contain them. | A failed stain or unsuitable positive area is possible; GYPA is a major erythrocyte membrane protein (UniProt P02724 function; general IHC practice). | Confirm erythrocytes on the counterstained section, run a known-positive control, and review the antibody's IHC-P procedure and detection reagents before interpreting a negative result (general IHC practice). |
| Signal is predominantly nuclear in tissue IHC. | Nuclear dominance conflicts with the UniProt membrane assignment, although HPA reports nucleoplasm in ICC-IF (UniProt P02724 subcellular; HPA subcellular ICC-IF). | Check whether nuclear colour persists in a no-primary control, review morphology, and compare a positive erythrocyte area; keep the ICC-IF observation separate from the IHC call (general IHC practice; HPA tissue IHC). |
| Diffuse stain obscures cell boundaries. | Excess detection signal, nonspecific binding or endogenous activity can produce broad background (general IHC practice). | Inspect no-primary and negative-compartment controls; review blocking, antibody dilution, washes and chromogen development against the validated IHC-P procedure (general IHC practice). |
| Kidney distal tubules stain despite an erythrocyte-selective summary. | HPA explicitly records Medium distal-tubule staining alongside the selective erythrocyte profile (HPA tissue IHC). | Record the cell type and staining distribution, examine HPA's tissue image, and compare an erythrocyte-positive area and negative controls before classifying the finding (HPA tissue IHC; general IHC practice). |
| Adipocytes or bronchial respiratory epithelium stain strongly. | Those specific cell compartments are listed as Not detected, so cross-reactivity or endogenous detection activity warrants investigation (HPA tissue IHC; general IHC practice). | Verify the stained cells by morphology, assess the no-primary control, and repeat with an independently validated IHC antibody if needed; distinguish stained erythrocytes in the section from the named negative cell compartment (general IHC practice; HPA tissue IHC). |
| IF/ICC shows cytosolic or nucleoplasmic signal alongside plasma-membrane signal. | HPA reports all three locations in ICC-IF, whereas UniProt assigns GYPA to the cell membrane (HPA subcellular ICC-IF; UniProt P02724 subcellular). | Evaluate IF/ICC with its own controls and localisation criteria; use the separate IF/ICC guide for assay design rather than treating these locations as an IHC-P protocol option (general IHC practice; HPA subcellular ICC-IF). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data. Antibody staining in cells/structures not annotated, view images.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Kidney | Distal tubules | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
Use membrane localisation, erythroid context and matched controls to troubleshoot GYPA staining in paraffin section chromogenic IHC (UniProt P02724; HPA tissue IHC).
Two anti-GYPA antibodies have IHC images from human paraffin-embedded tumor sections (A02184-2 and M02184-1 IHC image captions). Neither has IF image data (catalog IF image fields).
A02184-2 has IHC images from human liver and renal cancer paraffin sections (A02184-2 IHC image captions). M02184-1 has IHC images from human lung and colon cancer paraffin sections (M02184-1 IHC image captions).
Which to pick: For tissue IHC, choose A02184-2 for the documented citrate pH 6 retrieval or M02184-1 for the documented EDTA pH 8 retrieval; both captions show paraffin sections, but neither reports the fixative (A02184-2 and M02184-1 IHC image captions). Neither SKU lists IF/ICC as a tested application or supplies an IF image, so neither has documented IF/ICC validation here (catalog applications and IF image fields). Neither has documented cross-species reactivity beyond human (catalog reactivity fields).