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- Table of Contents
Plan HSF1 staining in paraffin sections around the general nuclear pattern seen in tissue IHC (HPA tissue IHC). This guide covers fixation, antibody use, and interpretation of stress related redistribution (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | General nuclear tissue staining (HPA tissue IHC) | |
| Staining pattern | Nuclear staining in glandular and other tissue cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A00250) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation conditions consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | During recovery, HSF1 can shift toward cytoplasm (UniProt) | |
| Regulation | Heat shock forms nuclear HSF1 foci (UniProt) | |
| Isoform / epitope | 2 isoforms, Long and Short; epitope coverage unknown (UniProt) |
The catalog antibody protocol and three published HSF1 IHC protocols cover AML bone marrow, archival tissue microarrays, and hepatocellular carcinoma (datasheet A00250; PMC9573868; PMC5356658; PMC4214332).
| Sample | Paraffin-embedded human esophageal squamous carcinoma tissue; fixative not specified (datasheet A00250) |
| Fixation | Image fixative and duration unreported (datasheet A00250); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A00250); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A00250) |
| Primary antibody | Rabbit anti-HSF1, 2 μg/ml (datasheet A00250) |
| Primary incubation | Overnight at 4 °C (datasheet A00250) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A00250) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | HSF1-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: General nuclear expression. No signal in the no-primary control. |
HSF1 is mainly nuclear, with nucleoplasmic staining expected in many cell types; HPA reports general nuclear expression with Supported tissue IHC reliability (HPA tissue IHC; HPA subcellular). Strong staining is documented in breast glandular cells and bronchial respiratory epithelial cells (HPA tissue IHC). A cytoplasmic component can occur (UniProt Q00613 subcellular). HSF1 has no transmembrane segment (UniProt Q00613 topology).
| Nuclei stain in breast glandular cells or bronchial respiratory epithelial cells. | This fits HPA's High staining in those cells and general nuclear tissue pattern (HPA tissue IHC). Compare nuclei with the counterstain and assess the proportion and intensity of stained cells; intensity can vary across tissue compartments (general IHC practice). |
| Staining is confined to extracellular material or cell borders, with nuclei clear. | That distribution does not fit the reported nuclear pattern or HSF1's lack of a transmembrane segment (HPA tissue IHC; UniProt Q00613 topology). Check for precipitate, edge staining, or nonspecific detection before interpreting the deposit as HSF1 (general IHC practice). |
| A normally low-staining cell population appears uniformly strong. | HPA lists liver cholangiocytes, soft-tissue fibroblasts, and appendix glandular cells as Low, rather than absent (HPA tissue IHC). Strong signal there warrants a specificity check, including cross-reactivity and endogenous chromogenic activity; a Low designation alone cannot prove a false positive (general IHC practice). |
| Color covers nuclei, cytoplasm, and blank slide areas with little cellular definition. | A deposit extending beyond cells is inconsistent with HPA's general nuclear tissue pattern (HPA tissue IHC). Uneven reagent coverage, incomplete washing, or detection background can obscure a real nuclear signal; inspect a negative control alongside the stained section (general IHC practice). |
| No nuclear signal appears in a selected High-staining tissue. | A blank breast glandular or bronchial epithelial compartment conflicts with HPA's High observations (HPA tissue IHC). First check tissue preservation, antibody application, retrieval and detection with controls; one negative section does not establish that the tissue lacks HSF1 (general IHC practice). |
| Tissue and cell selection | HPA reports High staining in several glandular and epithelial populations, including breast glandular cells and bronchial respiratory epithelial cells, and Low staining in liver cholangiocytes, soft-tissue fibroblasts, and appendix glandular cells (HPA tissue IHC). Use the identified cell population, rather than the whole organ, when judging a result. |
| Cellular location and stress state | HPA describes a mainly nucleoplasmic location with additional cytosolic signal (HPA subcellular). UniProt reports cytoplasmic monomers in unstressed cells, nuclear accumulation and nuclear stress bodies after heat shock, and cytoplasmic relocalization during recovery (UniProt Q00613 subcellular). Interpret a cytoplasmic component in its experimental context. |
| Catalog antibody validation | HPA lists HPA008888 and CAB004239 as Supported for IHC; HPA008888 is also Supported for ICC (HPA antibodies). Supported tissue reliability reflects agreement between antibody staining and RNA expression data (HPA tissue IHC). These designations support use of controls but do not guarantee specificity in every specimen. |
| Isoforms and processing | UniProt lists Long and Short isoforms, one chain spanning residues 1–529, and no signal peptide or propeptide (UniProt Q00613 isoforms; processing). The supplied record gives no antibody epitope, so it cannot establish whether either catalog antibody recognizes both isoforms or whether an isoform changes the observed stain. |
| Fixation and antigen retrieval | Target-specific fixation sensitivity and retrieval requirements are unreported in the supplied UniProt and HPA records. For paraffin-section IHC, optimize retrieval against a positive control and check the resulting nuclear pattern; do not infer an HSF1-specific fixation effect from its topology or HPA staining levels (general IHC practice). |
| IF/ICC Q&A: what location should appear? | Expect mainly nucleoplasmic fluorescence, with possible cytosolic signal (HPA subcellular). HPA008888 has Supported ICC validation, and HPA shows ICC/IF images in A-431, U-251MG, U2OS, and KOLF2.1J cells (HPA antibodies; HPA subcellular). IF/ICC staining conditions belong in the separate guide. |
| Situation | Likely cause | Next action |
|---|---|---|
| The positive-control nuclei are blank. | The run may have lost signal during retrieval, antibody application, or chromogenic detection; the supplied sources do not identify an HSF1-specific fixation failure (general IHC practice). | Repeat with a documented High cell population, such as breast glandular cells, and inspect retrieval and detection controls before changing the biological interpretation (HPA tissue IHC; general IHC practice). |
| Strong color appears mainly at tissue edges or in empty areas. | An acellular or edge-weighted deposit is inconsistent with HPA's general nuclear pattern and may reflect uneven reagent coverage or chromogen deposit (HPA tissue IHC; general IHC practice). | Compare an adjacent negative control, check section coverage and washing, and score only cell-associated staining with interpretable nuclei (general IHC practice). |
| The negative control is brown. | Residual endogenous detection activity or nonspecific secondary/detection binding can create chromogenic signal independently of the primary antibody (general IHC practice). | Verify the control setup and appropriate activity blocking, then repeat detection before assigning any brown deposit to HSF1 (general IHC practice). |
| Only cytoplasmic signal is visible. | Cytosolic HSF1 is reported, and UniProt describes state-dependent movement, but HPA tissue IHC reports general nuclear expression (HPA subcellular; HPA tissue IHC; UniProt Q00613 subcellular). A cytoplasmic-only section therefore needs context and validation. | Check nuclear counterstain and a High-staining control, review the stress or recovery condition, and confirm that detection is not broadly cytoplasmic in the negative control (HPA tissue IHC; UniProt Q00613 subcellular; general IHC practice). |
| A Low HPA cell population stains more strongly than the control tissue. | HPA's Low category is an observed level, not proof of absence; unexpected strength can also arise from cross-reactivity or detection background (HPA tissue IHC; general IHC practice). | Confirm the exact cell identity, compare a negative control and a documented High population in the same run, and avoid calling the result specific from intensity alone (HPA tissue IHC; general IHC practice). |
| Adjacent sections give inconsistent nuclear intensity. | Uneven section handling or assay coverage can change apparent intensity across a run; the supplied sources provide no target-specific fixation-effect evidence (general IHC practice). | Review section quality, reagent coverage, retrieval consistency, and control performance; compare equivalent cell populations before interpreting a biological difference (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Cerebellum | Cells in molecular layer | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: HSF1 is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot HSF1 staining by checking retrieval, nuclear localisation, controls, and scoring in paraffin section IHC; use the IF guidance for companion imaging.
Human paraffin-section IHC images show HSF1 staining in esophageal squamous carcinoma, bladder cancer and breast cancer; an ICC image shows HeLa cells (catalog image captions).
A00250 has a human esophageal squamous carcinoma IHC image, and M00250-1 has a human bladder cancer IHC image (respective image captions). P00250 has a human breast cancer IHC image, while A00250S326 has a phospho-HSF1(S326) ICC image in HeLa cells (respective image captions).
Which to pick: For human paraffin-section IHC, select A00250 for esophageal squamous carcinoma, rabbit monoclonal M00250-1 for bladder cancer, or rabbit monoclonal P00250 for phospho-HSF1(S326) in breast cancer (catalog titles and respective IHC image captions); the IHC captions do not report a fixative. For IF/ICC, M00250-1 and P00250 list both applications, and A00250S326 has an ICC image from paraformaldehyde-fixed HeLa cells (catalog applications; A00250S326 image caption). None has documented reactivity beyond human for cross-species selection (catalog reactivity: all four SKUs).