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- Table of Contents
Plan IDH2 chromogenic IHC in paraffin sections around its granular cytoplasmic tissue pattern (HPA tissue IHC) and mitochondrial location (UniProt). Use the documented positive and undetected cell populations to assess staining, with attention to endogenous peroxidase in bone marrow (HPA tissue IHC; standard IHC practice).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Granular cytoplasm (HPA tissue IHC); mitochondrion (UniProt) | |
| Staining pattern | General granular cytoplasmic staining across cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M00510-3) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Epididymis+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Endogenous peroxidase in bone marrow may confound staining (HPA tissue IHC; standard IHC practice) | |
| Regulation | Tissue-dependent expression (HPA tissue IHC) | |
| Isoform / epitope | 2 isoforms; mature chain 40–452; epitope coverage unknown (UniProt) |
The catalog antibody's IHC-P protocol is paired with a published protocol for IDH2 R172S staining in breast tumors (PMC7286791).
| Sample | Paraffin-embedded human lung cancer tissue; fixative not specified (datasheet M00510-3) |
| Fixation | Image fixative and duration unreported (datasheet M00510-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M00510-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M00510-3) |
| Primary antibody | Mouse monoclonal (clone 2H4) anti-IDH2, 2μg/ml (datasheet M00510-3) |
| Primary incubation | Overnight at 4 °C (datasheet M00510-3) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet M00510-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | IDH2-positive staining in glandular cells of appendix (HPA tissue IHC: High). HPA tissue profile: General cytoplasmic expression with a granular pattern. No signal in the no-primary control. |
IDH2 localizes to mitochondria and has no transmembrane segment (UniProt P48735). In paraffin sections, expect granular cytoplasmic staining in positive cells, including colon glandular cells and bronchial respiratory epithelial cells (HPA: High; general cytoplasmic, granular pattern). HPA rates the tissue IHC evidence Enhanced, while reporting medium consistency between antibody staining and RNA expression data (HPA: reliability).
| Granular cytoplasmic staining in colon glandular cells or bronchial respiratory epithelial cells. | This fits the reported pattern in these High staining cell populations (HPA: tissue IHC). Granularity is consistent with mitochondrial localization (UniProt P48735; HPA: subcellular), although chromogenic IHC alone does not prove that each visible granule is a mitochondrion (general IHC practice). |
| Predominantly nuclear or sharply cell-surface staining, with little granular cytoplasmic signal. | That compartment conflicts with the reported mitochondrial localization and general granular cytoplasmic IHC profile (UniProt P48735; HPA: tissue IHC and subcellular). Review the signal as a possible staining artefact; compartment alone cannot identify its cause (general IHC practice). |
| Strong staining in liver cholangiocytes, while the expected positive cells are weak. | HPA reports IDH2 as Not detected in cholangiocytes, specifically; it does not classify every liver cell as negative (HPA: tissue IHC). Consider cross-reactivity or endogenous chromogenic activity, then compare cell identity and controls (general IHC practice). |
| Uniform color across cells, extracellular areas, or most of the section. | A widespread haze obscures the reported granular cytoplasmic pattern (HPA: tissue IHC). It can arise from nonspecific staining or the detection system; judge it against a control processed with the same detection reagents (general IHC practice). |
| No staining in colon glandular cells or bronchial respiratory epithelial cells. | Those cells are reported High, so an absent signal calls for a technical review (HPA: tissue IHC). Check tissue preservation, retrieval, antibody application, and detection with appropriate controls before interpreting the result as biological absence (general IHC practice). |
| Cell identity and comparator | HPA reports High staining in colon glandular cells and Not detected staining in liver cholangiocytes (HPA: tissue IHC). Score the named cell populations; neither observation defines an entire organ as uniformly positive or negative (general IHC practice). |
| Compartment and topology | IDH2 is mitochondrial and has no annotated transmembrane segment (UniProt P48735). The matching tissue IHC description is general granular cytoplasmic expression (HPA: tissue IHC); a continuous plasma-membrane outline is therefore unexpected. |
| Antibody evidence | HPA lists HPA007831 as Enhanced for IHC and Supported for ICC, and describes medium consistency between staining and RNA expression (HPA: antibody validation; tissue IHC reliability). These ratings support use of the reported pattern while leaving individual slide interpretation dependent on controls. |
| Processing and isoforms | UniProt lists two isoforms and a mature chain spanning residues 40–452 (UniProt P48735). The supplied record gives no antibody epitope, so it cannot establish whether either isoform or processing changes this antibody's staining; avoid assigning a compartment change to either. |
| IF/ICC Q&A: what localization should an image show? | The supported IF/ICC location is mitochondria; HPA lists images for A-431, U-251MG, and U2OS and rates HPA007831 ICC Supported (HPA: subcellular; antibody validation). This is a localization answer, not an IF/ICC protocol or a claim about paraffin-section signal intensity. |
| Situation | Likely cause | Next action |
|---|---|---|
| Known-positive cells remain unstained. | The run may have lost detectable signal; the supplied sources do not establish IDH2-specific fixation sensitivity (HPA: tissue IHC; UniProt P48735). | Confirm the named positive cell population, then review the run's retrieval, primary antibody, and detection controls using general IHC practice. Treat an isolated negative slide cautiously when HPA reports those cells High (HPA: tissue IHC). |
| Color is predominantly nuclear or outlines cell surfaces. | The distribution disagrees with mitochondrial localization and the reported granular cytoplasmic profile (UniProt P48735; HPA: tissue IHC). | Verify morphology and repeat with appropriate negative and positive controls. Review nonspecific binding or detection artefact before scoring it as IDH2 (general IHC practice). |
| A Not detected comparator stains strongly. | For example, cholangiocytes are reported Not detected; unexpected color could reflect cell misidentification, cross-reactivity, or detection background (HPA: tissue IHC; general IHC practice). | Confirm that the stained cells are cholangiocytes and compare them with a High staining population and detection controls. Do not treat the whole liver as the negative comparator (HPA: tissue IHC). |
| Granular signal is buried in diffuse brown haze. | Background from nonspecific binding or endogenous detection activity can obscure cell-level interpretation (general IHC practice). | Inspect a matched negative detection control and the blocking and wash steps. Assess endogenous peroxidase control if using peroxidase detection; then judge whether the granular cytoplasmic pattern is distinguishable (general IHC practice; HPA: tissue IHC pattern). |
| Signal varies between cells or sections. | HPA reports specific cell populations at different levels, including High colon glandular cells and Not detected liver cholangiocytes (HPA: tissue IHC). Variation alone does not show an assay failure. | Record tissue, cell identity, compartment, and intensity separately. Compare like cell populations and the same run's controls before attributing variation to staining conditions (general IHC practice). |
| The researcher wants to transfer this chromogenic result to IF/ICC. | HPA supports mitochondrial ICC localization, while this section's tissue intensity categories come from IHC (HPA: subcellular; tissue IHC). | Use the IF/ICC guide for its own controls and imaging decisions. Expect a mitochondrial localization pattern in supported ICC evidence, but do not convert IHC intensity categories into IF intensity predictions (HPA: subcellular; general IF practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Cerebellum | GLUC cells - cytoplasm/membrane | High | Protein (IHC) | HPA → |
| Cervix | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Epididymis | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Liver | Cholangiocytes | Not detected | Protein (IHC) | HPA → |
| Ovary | Ovarian stroma cells | Not detected | Protein (IHC) | HPA → |
| Smooth muscle | Smooth muscle cells | Not detected | Protein (IHC) | HPA → |
| Spleen | Cells in red pulp | Not detected | Protein (IHC) | HPA → |
These questions guide chromogenic IHC of paraffin sections stained for IDH2, with one entry on adapting the readout to IF.
Catalog images document IDH2 IHC in human cancer paraffin sections and mouse heart tissue, plus IF in A431 cells (catalog image captions: M00510-3, M00510-4, PB9602, M00510, A00510, M00510-2).
IHC figures show M00510-3 in human lung cancer, M00510-4 in human testicular cancer, PB9602 and M00510 in human colon cancer, and A00510 in mouse heart (catalog image captions). M00510-2 has an IF figure in A431 cells (catalog image caption).
Which to pick: For paraffin-section IHC, consider M00510-3 or M00510-4: both are mouse monoclonals whose own captions show EDTA retrieval at pH 8.0 and primary antibody at 2 μg/mL in human lung or testicular cancer sections, respectively; the fixative is unreported (catalog clone fields and IHC image captions). For IF/ICC, M00510-2 has an A431 cell IF figure, while M00510-4 lists both IF/ICC and IHC applications (catalog image captions and applications). For IHC across species, PB9602 has images from human colon cancer and mouse and rat heart, with Human, Mouse and Rat reactivity listed; its own IHC caption reports EDTA retrieval at pH 8.0 and 2 μg/mL primary antibody, but no fixative (catalog IHC image captions and reactivity).