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- Table of Contents
Plan ILK IHC in paraffin sections using skeletal-muscle myocytes and kidney glomerular cells as high-staining references (HPA tissue IHC). This guide covers the catalog antibody’s 2–5 μg/ml IHC range (datasheet A02932-3), fixation consistency and interpretation of cytoplasmic staining (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in most organs (HPA tissue IHC) | |
| Staining pattern | Strong cytoplasmic staining in skeletal-muscle myocytes (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A02932-3) | |
| Positive control | Kidney+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent across samples. (standard IHC practice; not target-specific) | |
| Caveat | Staining and RNA levels show medium consistency (HPA tissue IHC) | |
| Regulation | No staining-linked regulator specified (UniProt) | |
| Isoform / epitope | 3 isoforms; epitope coverage is unspecified (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet: A02932-3) with 4 published ILK IHC protocols (PMC12826184; PMC2588856; PMC4878430; PMC546218).
| Sample | Paraffin-embedded mouse colon tissue; fixative not specified (datasheet A02932-3) |
| Fixation | Image fixative and duration unreported (datasheet A02932-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A02932-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02932-3) |
| Primary antibody | Rabbit anti-ILK, 2-5 μg/ml (datasheet A02932-3) |
| Primary incubation | Overnight at 4 °C (datasheet A02932-3) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A02932-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ILK-positive staining in cells in glomeruli of kidney (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in most organs, with highest abundance in muscle tissues. No signal in the no-primary control. |
In paraffin-section IHC, expect predominantly cytoplasmic ILK staining, especially in skeletal-muscle myocytes and cells in kidney glomeruli (HPA tissue IHC: High in both; cytoplasmic expression in most organs). ILK also localizes to focal adhesions and other intracellular sites (UniProt Q13418: subcellular location). It has no transmembrane segment (UniProt Q13418: topology). HPA rates its tissue IHC evidence Enhanced, while reporting medium consistency between staining and RNA expression (HPA tissue IHC: reliability).
| Strong intracellular staining in skeletal-muscle myocytes or cells in kidney glomeruli. | This matches the reported high-staining cell populations and provides a useful positive-pattern comparison (HPA tissue IHC: High in both). Judge the relevant cells, rather than assigning one intensity to every structure in the section (general IHC practice). |
| Predominantly cytoplasmic staining, with possible signal near cell junctions or adhesion-rich edges. | The cytoplasmic pattern matches tissue IHC (HPA tissue IHC: profile); junctional and focal-adhesion localization is biologically plausible (UniProt Q13418: subcellular location). Routine chromogenic sections may not resolve individual focal adhesions (general IHC practice). |
| Signal confined to extracellular material, luminal contents, or a sharp uninterrupted surface rim. | Treat this as a pattern requiring investigation: ILK has no transmembrane segment, and its annotated locations are intracellular or adhesion-associated (UniProt Q13418: topology and subcellular location). Check controls and tissue morphology before calling it ILK (general IHC practice). |
| Staining in adipocytes or esophageal squamous epithelial cells. | These cell populations were not detected in the supplied tissue survey (HPA tissue IHC: adipocytes; esophagus). Consider nonspecific binding or endogenous chromogenic activity, but verify the exact cell identity and control results before assigning a cause (general IHC practice). |
| No staining in skeletal-muscle myocytes or cells in kidney glomeruli. | Both are reported as High in the HPA survey (HPA tissue IHC: skeletal muscle; kidney). A blank result warrants checking section quality, antibody compatibility, retrieval, detection, and a matched positive control; it alone does not prove ILK absence (general IHC practice). |
| Tissue and cell selection (HPA tissue IHC: cell-level staining). | Skeletal-muscle myocytes and glomerular cells offer High-staining comparisons; several glandular and hematopoietic populations are Medium, while listed negative calls apply to specific cells, not whole organs (HPA tissue IHC: positive and negative lists). |
| Compartment and resolution (UniProt Q13418: subcellular location; HPA subcellular ICC-IF). | Focal adhesions are a supported main ICC-IF location, with supported cytosol and approved actin-filament localization; nucleoplasm is uncertain (HPA subcellular ICC-IF). These microscopy calls can guide interpretation but do not establish a required punctate pattern in chromogenic IHC (general IHC practice). |
| Antibody validation (HPA antibodies: CAB004041 IHC Enhanced; HPA tissue IHC: reliability). | The listed IHC antibody has Enhanced validation, but the tissue profile reports only medium agreement with RNA expression (HPA antibodies: CAB004041; HPA tissue IHC: reliability description). Use the actual IHC-validated antibody's controls when judging a surprising pattern (general IHC practice). |
| Protein forms and epitope scope (UniProt Q13418: isoforms and processing). | UniProt lists three isoforms and a single annotated chain spanning residues 1–452, with no signal peptide or propeptide (UniProt Q13418: isoforms and processing). Without an antibody epitope, these facts cannot establish which isoforms its staining detects. |
| Situation | Likely cause | Next action |
|---|---|---|
| The known-positive myocytes or glomerular cells are blank (HPA tissue IHC: High in both). | Possible weak assay signal, an incompatible reagent, or loss of usable tissue; the slide alone cannot distinguish these (general IHC practice). | Confirm section integrity and the antibody's IHC-P instructions; compare a matched positive control, then review retrieval, dilution, incubation, and detection one variable at a time (general IHC practice). |
| Color covers most of the section without recognizable cellular boundaries. | Broad background can result from nonspecific binding, excess primary antibody, incomplete washes, or endogenous detection activity (general IHC practice). | Inspect a no-primary control, verify blocking and wash steps, and adjust antibody or detection conditions according to the assay controls (general IHC practice). |
| Unexpected signal appears in HPA-undetected adipocytes or esophageal squamous cells. | Potential nonspecific staining or endogenous chromogenic activity; HPA's negative observations do not diagnose the mechanism (HPA tissue IHC: negative list; general IHC practice). | Recheck cell identification and compare no-primary and positive controls. If the signal persists only with primary antibody, reassess specificity using the IHC-validated antibody's validation information (general IHC practice). |
| A crisp extracellular or luminal pattern dominates. | That distribution conflicts with ILK's annotated intracellular locations and lack of a transmembrane segment (UniProt Q13418: subcellular location and topology). | Check morphology and a no-primary control for deposits or endogenous color; compare the intracellular staining of a known-positive section before scoring the pattern (general IHC practice; HPA tissue IHC: High in myocytes and glomerular cells). |
| Nuclear staining accompanies a convincing cytoplasmic pattern. | Nuclear localization is annotated by UniProt, while nucleoplasmic ICC-IF localization is uncertain in HPA (UniProt Q13418: subcellular location; HPA subcellular ICC-IF). | Record cytoplasmic and nuclear staining separately and check controls. Do not classify nuclear signal as either confirmed ILK or automatic artifact from compartment alone (general IHC practice). |
| Can the ICC-IF focal-adhesion image define the required IHC-P pattern? | HPA supports focal adhesions as the main ICC-IF location, whereas its tissue IHC summary describes mainly cytoplasmic staining (HPA subcellular ICC-IF; HPA tissue IHC: profile). | Use ICC-IF as compartment context and score paraffin-section IHC against its cellular morphology, tissue pattern, and assay controls (general IHC practice; HPA tissue IHC: positive list). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Antibody staining in cells/structures not annotated, view images.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Kidney | Cells in glomeruli | High | Protein (IHC) | HPA → |
| Skeletal muscle | Myocytes | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Endometrium | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot chromogenic ILK staining in paraffin sections by checking retrieval, compartment, controls and scoring before interpreting differences between samples.
ILK antibodies have paraffin-section IHC images from human, mouse and rat samples (catalog IHC captions); IF/ICC images show A431 and 293 cells (catalog IF captions).
A02932-3 has IHC images of mouse colon, rat kidney and human lung cancer, while A02932-2 has human bladder epithelial carcinoma IHC and A431 cell IF images (catalog image captions). M02932-2 has human squamous cell lung carcinoma and mouse kidney IHC images; M02932 has human stomach IHC and 293 cell IF images (catalog image captions).
Which to pick: For tissue IHC, choose A02932-2 for a human paraffin-section example or mouse monoclonal M02932-2 for a human carcinoma paraffin-section example; neither caption reports the fixative (catalog IHC captions; catalog clone: 3C7E1). For IF/ICC, A02932-3 has an A431 cell IF image and lists both applications (catalog IF caption; catalog applications). For IHC across species, A02932-3 has paraffin-section images from human, mouse and rat samples (catalog IHC captions).