This website uses cookies to ensure you get the best experience on our website.
- Table of Contents
Plan paraffin-section LIF IHC around the cytoplasmic staining reported in most tissues (HPA tissue IHC). Start with the catalog antibody’s 0.5–1 µg/mL range, and interpret staining in light of LIF secretion and the atlas’s uncertain reliability (datasheet PB9036; UniProt; HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in most tissues (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining across many cell types (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet PB9036) | |
| Positive control | Adipose tissue+4 more · see all | |
| Negative control | Smooth muscle |
| Fixation | Keep fixation consistent between sections (standard IHC practice; not target-specific) | |
| Caveat | Secreted LIF can make RNA and protein locations differ (HPA tissue IHC) | |
| Regulation | Expression regulation not annotated (UniProt) | |
| Isoform / epitope | 2 isoforms; epitope coverage is unspecified (UniProt) |
The catalog antibody’s IHC-P protocol is paired with four published LIF immunohistochemistry protocols covering rat uterus, mouse uterus, human oral tissue, and human liver (PMC3655613; PMC12911375; PMC12508188; PMC538256).
| Sample | Paraffin-embedded human lung cancer tissues; fixative not specified (datasheet PB9036) |
| Fixation | Image fixative and duration unreported (datasheet PB9036); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet PB9036) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9036) |
| Primary antibody | Rabbit anti-LIF, 0.5-1μg/ml (datasheet PB9036) |
| Primary incubation | Overnight at 4 °C (datasheet PB9036) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9036) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | LIF-positive staining in adipocytes of adipose tissue (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic expression in most tissues. No signal in the no-primary control. |
LIF is secreted and has no transmembrane segment (UniProt P15018 topology). In tissue sections, HPA reports cytoplasmic staining in most tissues, including medium staining in adipocytes and selected glandular, epithelial, neuronal and endothelial cells (HPA tissue IHC). Treat this as a provisional pattern: HPA rates its tissue IHC profile Uncertain because secreted protein can appear away from its site of production, and retesting is pending (HPA tissue IHC reliability).
| Cytoplasmic staining in adipocytes or listed glandular, epithelial, neuronal or endothelial cells. | Consistent with the reported tissue pattern; HPA records medium staining in these listed cell types (HPA tissue IHC). Score cell identity and intensity together, while retaining the Uncertain reliability rating (HPA tissue IHC reliability). |
| Predominantly nuclear or sharply membrane-restricted staining. | Neither is the reported main pattern: HPA describes cytoplasmic tissue staining and supported cytosolic ICC-IF localization (HPA tissue IHC; HPA subcellular). Recheck morphology and detection background before assigning LIF positivity; LIF has no transmembrane segment (UniProt P15018 topology). |
| Strong staining of smooth muscle cells while expected positive cells remain weak. | This conflicts with HPA’s Not detected result for smooth muscle cells (HPA tissue IHC). Consider cross-reactivity or endogenous chromogenic detection activity as possibilities, then compare with an appropriate reagent control (general IHC practice). |
| Diffuse color across stroma, lumens or tissue edges without identifiable positive cells. | Do not equate extracellular color with a producing cell: LIF is secreted, so protein and source may differ (UniProt P15018 localization; HPA tissue IHC reliability). Test whether the color persists in a detection-only control (general IHC practice). |
| No staining in a section expected to contain HPA-listed medium-positive cells. | An absent result can reflect assay performance or sampling; the listed staining is an uncertain reference, not a guaranteed control outcome (HPA tissue IHC; HPA tissue IHC reliability). Confirm that the expected cell population is present before changing the staining conditions (general IHC practice). |
| Secreted protein and processing | LIF has a signal peptide at residues 1–22 and a mature chain at 23–202 (UniProt P15018 processing). Its secreted status complicates assignment of extracellular staining to a producing cell (UniProt P15018 localization; HPA tissue IHC reliability). |
| Tissue choice | Adipocytes, several listed glandular cells, respiratory epithelium, neurons and colon endothelium are medium-positive examples; smooth muscle cells are Not detected (HPA tissue IHC). Verify that the relevant cells occur in the chosen section (general IHC practice). |
| Antibody evidence | HPA018844 has Uncertain IHC validation; CAB025985 has no IHC status in the supplied HPA record (HPA antibodies). HPA’s tissue profile is also Uncertain, so concordant morphology should not be treated as definitive target validation (HPA tissue IHC reliability). |
| Isoforms and glycosylation | UniProt lists 2 isoforms and 6 glycosylation sites (UniProt P15018 isoforms; glycosylation). The supplied sources do not map antibody epitopes, so they cannot predict an isoform-specific or glycosylation-dependent IHC pattern. |
| IF/ICC Q&A: expected compartment? | HPA reports mainly cytosolic localization in ICC-IF and Supported ICC status for both listed antibodies (HPA subcellular; HPA antibodies). This informs compartment interpretation only; the primary application here is tissue IHC. |
| Situation | Likely cause | Next action |
|---|---|---|
| A listed medium-positive cell population shows no color. | The population may be absent from the cut, or the IHC run may have failed; HPA’s medium result remains Uncertain (HPA tissue IHC reliability). | Check the section’s cell identity and run controls first. If controls fail, review retrieval, primary dilution and chromogenic detection as general IHC workflow variables (general IHC practice); no LIF-specific retrieval condition is established here. |
| Smooth muscle cells stain as strongly as the intended cells. | HPA reports smooth muscle cells as Not detected, making this an unexpected pattern (HPA tissue IHC). Cross-reactivity or endogenous detection activity is possible (general IHC practice). | Compare with a section processed without primary antibody and assess whether the signal follows tissue morphology (general IHC practice). Do not score smooth muscle color as validated LIF expression from this record. |
| Nuclei dominate the signal. | A mainly nuclear pattern conflicts with HPA’s cytoplasmic tissue profile and supported cytosolic ICC-IF location (HPA tissue IHC; HPA subcellular). | Check the counterstain and detection-only control, then reassess compartment boundaries (general IHC practice). Keep the result provisional if nuclear color remains dominant. |
| Broad extracellular haze obscures cell boundaries. | Secreted LIF can complicate assignment of protein to a source cell (UniProt P15018 localization; HPA tissue IHC reliability); nonspecific chromogenic background is another possibility (general IHC practice). | Compare primary-omission and tissue controls, then score only clearly localized cellular staining (general IHC practice). Record extracellular color separately rather than assigning it to nearby cells. |
| Only low-level color appears in a proposed reference tissue. | HPA reports Low staining for several cell populations, including duodenal and rectal glandular cells; they provide a weaker reference than its listed medium-positive cells (HPA tissue IHC). | Use an HPA-listed medium-positive cell population for a clearer comparison, while checking cell identity and the Uncertain reliability rating (HPA tissue IHC; HPA tissue IHC reliability). |
| ICC-IF appears cytosolic but tissue IHC is ambiguous. | Supported ICC localization and Uncertain tissue IHC answer different questions (HPA subcellular; HPA antibodies; HPA tissue IHC reliability). Agreement in compartment alone cannot settle tissue specificity. | Interpret the tissue slide by its cell types, compartment and IHC controls (general IHC practice); retain HPA’s Uncertain tissue rating when reporting the result (HPA tissue IHC reliability). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Uncertain — At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex. Pending retesting.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Breast | Adipocytes | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Smooth muscle | Smooth muscle cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot LIF staining in paraffin sections by checking retrieval, cellular pattern, detection controls, and scoring before assigning biological meaning.
PB9036 has IHC images from human lung cancer and placenta paraffin sections (catalog PB9036 IHC captions); the payload supplies no IF/ICC images (catalog PB9036 image fields).
PB9036 is listed for human IHC and WB (catalog PB9036 applications and reactivity). Its IHC captions show staining in paraffin sections of human lung cancer and placenta (catalog PB9036 IHC captions).
Which to pick: Choose PB9036 for human paraffin-section IHC: its captions document citrate retrieval and chromogenic detection, but do not report the fixative (catalog PB9036 IHC captions). No SKU in this payload is listed for IF/ICC or reactivity beyond human, so it does not establish an IF/ICC or cross-species choice (catalog PB9036 applications and reactivity).