This website uses cookies to ensure you get the best experience on our website.
- Table of Contents
Plan chromogenic IHC for LIF in paraffin sections using the catalog antibody’s documented conditions (datasheet PB9036). Interpret cytoplasmic staining against HPA’s uncertain tissue profile, accounting for LIF secretion (HPA tissue IHC; UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining; LIF is secreted (HPA tissue IHC; UniProt) | |
| Staining pattern | Cytoplasmic staining in most tissues (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet PB9036) | |
| Positive control | Adipose tissue+4 more · see all | |
| Negative control | Smooth muscle |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific). Selected-image fixative and duration unreported (datasheet PB9036); verify before use. | |
| Caveat | Secreted LIF may stain away from its producer cells (HPA tissue IHC; UniProt) | |
| Regulation | Regulation not specified in the record (UniProt) | |
| Isoform / epitope | 2 isoforms; signal peptide 1–22 is removed; epitope unreported (UniProt) |
The catalog antibody’s IHC-P protocol is accompanied by 4 published LIF immunohistochemistry protocols spanning paraffin and frozen sections.
| Sample | Paraffin-embedded human lung cancer tissues; fixative not specified (datasheet PB9036) |
| Fixation | Image fixative and duration unreported (datasheet PB9036); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet PB9036) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9036) |
| Primary antibody | Rabbit anti-LIF, 0.5-1μg/ml (datasheet PB9036) |
| Primary incubation | Overnight at 4 °C (datasheet PB9036) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9036) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | LIF-positive staining in adipocytes of adipose tissue (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic expression in most tissues. No signal in the no-primary control. |
LIF is a secreted protein with no transmembrane segment (UniProt P15018 topology). In tissue IHC, expect predominantly cytoplasmic staining; HPA reports medium staining in adipocytes, respiratory epithelial cells, neurons and selected glandular cells (HPA tissue IHC). Treat this as a provisional pattern: HPA rates its tissue IHC reliability Uncertain because secretion can separate protein location from RNA expression, and retesting is pending (HPA tissue IHC).
| Cytoplasmic staining in adipocytes or bronchial respiratory epithelial cells, with interpretable cell borders. | This fits HPA's reported medium staining in those cells and its broad cytoplasmic profile (HPA tissue IHC). Score the relevant cells and their intensity; the HPA pattern is provisional because tissue IHC reliability is Uncertain (HPA tissue IHC). |
| Strong, sharply nuclear or membrane-restricted staining dominates the section. | That pattern differs from HPA's cytoplasmic tissue profile and supported cytosolic ICC-IF location (HPA tissue IHC; HPA subcellular). Review morphology and controls before assigning it to LIF; secretion alone does not establish a membrane-restricted pattern (UniProt P15018 topology). |
| Smooth muscle cells stain strongly, especially when control sections show similar color. | HPA reports LIF as not detected in smooth muscle cells (HPA tissue IHC). Consider antibody cross-reactivity or endogenous detection activity; inspect controls before calling these cells positive. A single unexpected stain cannot resolve HPA's Uncertain tissue reliability (HPA tissue IHC). |
| Diffuse color covers extracellular space, tissue edges or many cell types without clear boundaries. | The distribution is difficult to score against HPA's cell-associated cytoplasmic observations (HPA tissue IHC). LIF is secreted, so extracellular material is biologically possible, but diffuse chromogen alone cannot identify its source (UniProt P15018 subcellular location; general IHC interpretation). |
| No staining appears in an adipocyte-rich area with preserved morphology. | HPA reports medium adipocyte staining in adipose tissue and breast (HPA tissue IHC). Check that the cells are present, then review assay controls and detection. Because HPA tissue IHC is Uncertain, absence in one section does not by itself establish assay failure (HPA tissue IHC). |
| Secretion and processing (UniProt P15018 topology) | LIF has a signal peptide at residues 1–22 and a mature chain at 23–202; it lacks a transmembrane segment (UniProt P15018). Cytoplasmic IHC can reflect cellular protein, while extracellular staining requires cautious interpretation because secreted protein may move beyond its producing cell (UniProt P15018; HPA tissue IHC). |
| Glycosylation and isoforms (UniProt P15018) | UniProt lists six glycosylation sites and two isoforms (UniProt P15018). Without an antibody epitope or isoform-specific validation in this payload, these annotations cannot predict which form the stain detects or justify a particular retrieval condition. |
| Tissue distribution and confidence (HPA tissue IHC) | HPA reports medium staining in eight listed tissue and cell combinations, low staining in six others, and no detection in smooth muscle cells (HPA tissue IHC). Its overall tissue IHC reliability is Uncertain, so these are comparison patterns rather than definitive positive and negative standards (HPA tissue IHC). |
| IHC antibody evidence (HPA antibodies) | The supplied HPA antibody record marks HPA018844 IHC as Uncertain; CAB025985 has no IHC status listed (HPA antibodies). Neither entry supplies an Enhanced IHC validation designation, so agreement with the reported tissue pattern should be interpreted with that limitation. |
| IF/ICC: what localization is expected? (HPA subcellular) | Mainly cytosolic signal is supported in HPA ICC-IF; images are listed for A-431, U-251MG and U2OS, and both supplied antibodies have Supported ICC status (HPA subcellular; HPA antibodies). That ICC evidence does not establish IHC reliability or an IF/ICC protocol (HPA antibodies). |
| Antigen retrieval choice (general IHC practice) | Evaluate retrieval against the IHC-validated antibody's instructions and assay controls (general IHC practice). Neither UniProt nor the supplied HPA records reports LIF-specific fixation sensitivity or an optimal retrieval condition; HPA staining levels cannot establish either effect (UniProt P15018; HPA tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal appears in the test section or an HPA-listed medium-staining tissue. | The sampled cells may be absent, or the IHC workflow may have failed; HPA's medium calls are provisional (HPA tissue IHC; general IHC practice). | Confirm the expected cell type and morphology, then check reagent and detection controls and the antibody's IHC instructions (general IHC practice). Repeat before interpreting a single blank section as biological absence. |
| A low-staining HPA tissue gives a faint, patchy result. | HPA lists several cell types at Low intensity, including caudate glia and duodenal glandular cells (HPA tissue IHC). Faint staining is therefore harder to separate from background. | Compare with a listed medium-staining cell type and the negative control under the same scoring criteria (HPA tissue IHC; general IHC practice). Record ambiguous cells as indeterminate rather than assigning a strong positive call. |
| Nuclei or cell membranes stain more strongly than cytoplasm. | A dominant nuclear or membrane-restricted pattern conflicts with HPA's cytoplasmic tissue profile and supported cytosolic ICC-IF localization (HPA tissue IHC; HPA subcellular). | Inspect counterstain, morphology and detection controls, then reassess antibody specificity (general IHC practice). Do not use the receptor-signaling description to label membrane staining as LIF: LIF itself is secreted (UniProt P15018). |
| Smooth muscle cells stain, despite an otherwise plausible section. | HPA reports smooth muscle cells as Not detected; unexpected color could reflect cross-reactivity or endogenous detection activity (HPA tissue IHC; general IHC practice). | Compare smooth muscle with adjacent expected cell types, and check a no-primary control and the detection-system controls (general IHC practice). Treat persistent staining as unresolved until specificity is supported. |
| Broad diffuse chromogen obscures cellular localization. | Background from blocking, detection or washing can obscure cell-associated staining (general IHC practice). LIF secretion also makes extracellular signal possible, but its source cannot be inferred from diffuse color alone (UniProt P15018). | Review negative controls, blocking and wash steps, then score only interpretable cell-associated staining (general IHC practice). Document extracellular color separately from HPA's reported cytoplasmic pattern (HPA tissue IHC). |
| IHC and IF/ICC appear to disagree. | HPA rates tissue IHC Uncertain while reporting supported cytosolic ICC-IF localization; the two observations have different validation status (HPA tissue IHC; HPA subcellular). | Compare compartment and cell identity within each assay, check its controls, and report the discordance with those source-specific confidence levels (HPA tissue IHC; HPA subcellular; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Uncertain — At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex. Pending retesting.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Breast | Adipocytes | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Smooth muscle | Smooth muscle cells | Not detected | Protein (IHC) | HPA → |
Use the catalog antibody’s paraffin-section workflow as the IHC starting point, and interpret LIF staining cautiously because secreted protein can appear away from its producing cells (UniProt P15018; HPA tissue IHC).
PB9036 has real IHC staining data from human paraffin-embedded lung cancer and placenta sections (catalog image captions). The catalog supplies no IF/ICC data (catalog applications and image captions).
PB9036 is listed for human IHC and WB (catalog applications and reactivity). Its IHC captions show staining of human paraffin-embedded lung cancer and placenta sections (catalog image captions).
Which to pick: Choose PB9036 for human paraffin-section IHC: its stated range is 0.5–1 μg/ml, and its captions use citrate retrieval at pH 6 for 20 minutes (datasheet dilution; PB9036 IHC captions). The captions do not report the fixative, and no clone is specified (PB9036 IHC captions; catalog clone field). No listed SKU is validated here for IF/ICC or cross-species use: PB9036 lists human reactivity and IHC/WB applications only (catalog reactivity and applications).