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- Table of Contents
Plan chromogenic IHC for MAP2K1 in paraffin sections using the catalog antibody at 2–5 μg/ml (datasheet A00292). Compare cytoplasmic staining with the tissue profile and account for its low consistency with RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | General cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic in glandular cells and lung macrophages (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A00292) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Breast+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific). Selected-image fixative and duration unreported (datasheet A00292); verify before use. | |
| Caveat | Antibody staining has low consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Expression regulation is not specified (UniProt) | |
| Isoform / epitope | Two isoforms; map the antibody epitope across both (UniProt) |
The catalog antibody uses EDTA pH 8.0 heat retrieval (datasheet A00292). Published IHC protocols cover HSCC tissue (PMC11984367) and liver sections (PMC7641625).
| Sample | Paraffin-embedded human ovarian cancer tissue; fixative not specified (datasheet A00292) |
| Fixation | Image fixative and duration unreported (datasheet A00292); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A00292); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A00292) |
| Primary antibody | Rabbit anti-MAP2K1, 2-5 μg/ml (datasheet A00292) |
| Primary incubation | Overnight at 4 °C (datasheet A00292) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A00292) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | MAP2K1-positive staining in glandular cells of adrenal gland (HPA tissue IHC: Medium). HPA tissue profile: General cytoplasmic expression. No signal in the no-primary control. |
MAP2K1 staining in paraffin sections should be predominantly cytoplasmic, especially in glandular cells and lung macrophages reported at medium intensity by HPA (HPA tissue IHC: general cytoplasmic expression; medium in listed cells). Its lack of a transmembrane segment is consistent with an intracellular protein, although UniProt also lists nuclear and cell-cycle-associated locations (UniProt Q02750: topology and subcellular location). HPA rates its tissue IHC as Approved but reports low consistency between staining and RNA data (HPA tissue IHC: reliability).
| Cytoplasmic chromogen in adrenal or appendix glandular cells, with discernible cell outlines. | This fits the reported medium staining in those cell types (HPA tissue IHC: adrenal gland and appendix). Score the relevant cells, since HPA reports levels by cell type; the result alone does not prove antibody specificity (HPA tissue IHC: cell-level observations and low staining–RNA consistency). |
| Strong staining confined to luminal material or extracellular spaces, with little cellular staining. | This does not match the reported general cytoplasmic IHC profile or a protein without a signal peptide or transmembrane segment (HPA tissue IHC: profile; UniProt Q02750: processing and topology). Consider deposited chromogen or nonspecific staining (general IHC practice). Nuclear staining alone needs context: UniProt also lists the nucleus (UniProt Q02750: subcellular location). |
| Respiratory epithelial cells stain strongly while nearby lung macrophages do not. | HPA reports respiratory epithelial cells in bronchus as not detected and lung macrophages as medium (HPA tissue IHC: bronchus and lung). The mismatch raises possible cross-reactivity or endogenous detection activity; assess cell identity and controls before assigning MAP2K1 expression (general IHC practice). |
| Chromogen covers most of the section, including spaces between cells. | A diffuse deposit obscures the cell-level cytoplasmic pattern used for interpretation (HPA tissue IHC: general cytoplasmic expression). Excess detection reagent, incomplete blocking or inadequate washing can produce background (general IHC practice); background alone cannot establish MAP2K1 distribution. |
| No cellular signal in an adrenal gland or appendix section selected as a positive reference. | HPA reports medium staining in glandular cells at these sites, so absence warrants a run-level check (HPA tissue IHC: adrenal gland and appendix). Confirm that the expected cells are present, then review antibody use and chromogenic detection with controls (general IHC practice). |
| Cell type and tissue selection | HPA reports medium staining in adrenal, appendix, duodenum and gallbladder glandular cells and lung macrophages, but not detected in breast adipocytes or bronchial respiratory epithelium (HPA tissue IHC). Use the named cell population when comparing sections; a whole tissue is not uniformly positive or negative (HPA tissue IHC: cell-level observations). |
| Compartment and topology | General cytoplasmic IHC staining is reported by HPA; UniProt lists cytoplasm, nucleus and locations at mitotic structures, with no signal peptide or transmembrane segment (HPA tissue IHC: profile; UniProt Q02750: subcellular location, processing and topology). Interpret a membrane-like edge with cellular context; these records do not set an IHC membrane-intensity threshold. |
| Strength of tissue evidence | The HPA tissue IHC status is Approved, with low consistency between antibody staining and RNA expression data (HPA tissue IHC: reliability and description). Three listed antibodies have Approved IHC status, but the supplied record gives no target-specific fixation or retrieval sensitivity (HPA antibodies: IHC status; supplied UniProt and HPA records). |
| Isoforms and modified residues | UniProt lists 2 isoforms and phosphorylation sites including Ser218 and Ser222 (UniProt Q02750: isoforms and modified residues). Without a supplied epitope or phospho-specific antibody record, these facts cannot predict differential chromogenic staining or establish that a dark cell has activated MAP2K1 (UniProt Q02750: record scope). |
| IF/ICC Q: What location should be expected? | A: HPA reports supported plasma membrane and cytosol localization, plus basal body localization, in ICC-IF (HPA subcellular: main and additional locations). Those fluorescence observations provide context, but do not replace the general cytoplasmic pattern reported for tissue IHC (HPA tissue IHC: profile). |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected glandular cells are unstained in a positive reference section. | The cells may be absent from the field, or the staining run may have failed; HPA reports medium staining for adrenal and appendix glandular cells (HPA tissue IHC). | First locate the specified cell type. Then check the catalog antibody's IHC-P instructions, retrieval step, antibody dilution and detection controls as general IHC workflow checks; no MAP2K1-specific retrieval effect is supplied (general IHC practice; supplied record scope). |
| Strong nuclear signal appears without convincing cytoplasmic staining. | UniProt includes nuclear localization, so a nuclear component is possible, but HPA describes general cytoplasmic tissue staining (UniProt Q02750: subcellular location; HPA tissue IHC: profile). | Compare the same cell type with a reference section and negative detection control. Treat a nucleus-only result as unresolved until the cellular pattern and controls support it (general IHC practice). |
| Bronchial epithelium stains strongly while macrophage staining is weak. | The relative pattern conflicts with HPA's not-detected bronchial respiratory epithelium and medium lung macrophage observations (HPA tissue IHC: bronchus and lung). Nonspecific antibody binding or endogenous chromogenic activity is possible (general IHC practice). | Verify the cell types morphologically, then examine a control omitting primary antibody and review blocking and detection steps (general IHC practice). Do not treat one discordant field as a new tissue-wide expression profile. |
| Most cells and extracellular areas show uniform brown haze. | Diffuse background prevents assessment of the reported cytoplasmic cell pattern (HPA tissue IHC: profile). Excess primary or detection reagent and insufficient washing are common general IHC causes (general IHC practice). | Inspect the negative detection control; optimize reagent concentration, blocking and washes according to the assay workflow (general IHC practice). Reassess only when individual cells and compartments are distinguishable. |
| A whole section is called negative because one cell population lacks staining. | HPA levels apply to named cell populations: breast adipocytes and bronchial respiratory epithelial cells are not detected, while several listed glandular populations and lung macrophages are medium (HPA tissue IHC). | Record tissue, cell type, compartment and intensity separately. Compare with an HPA observation for that specific population before changing the section-level interpretation (HPA tissue IHC: cell-level observations). |
| A dark cytoplasmic result is interpreted as activated MAP2K1. | Routine total-protein IHC intensity does not identify a phosphorylation state; UniProt lists modified residues but the supplied records do not define a phospho-specific staining reagent (UniProt Q02750: modified residues; supplied record scope). | Report the observed compartment and intensity without an activation claim. A phosphorylation conclusion requires a separately validated phospho-specific assay and its controls (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Caudate | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Cervix | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Liver | Cholangiocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot MAP2K1 staining in paraffin sections by checking retrieval, controls, cellular location, and scoring before interpreting pathway activity.
These anti-MAP2K1 catalog entries include human tissue IHC images and cell IF images (catalog image captions); all four list human, mouse, and rat reactivity (catalog reactivity fields).
A00292 shows IHC in a human ovarian cancer paraffin section and IF in TPC1 and U2OS cells (A00292 image captions); M00292-5 shows IHC in human kidney and lung (M00292-5 image captions). M00292-1 shows IHC in a human kidney paraffin section and lists IF/ICC (M00292-1 image caption; catalog applications), while M00292-2 shows IF at 1:50 and lists IHC without an IHC image (M00292-2 IF caption; catalog applications and image captions).
Which to pick: Choose A00292 for paraffin tissue IHC when a documented starting method helps: its human ovarian cancer caption specifies EDTA retrieval at pH 8.0 and 2 μg/ml antibody; the fixative is unreported (A00292 IHC caption). For IF/ICC, A00292 has cell images at 5 μg/ml, while M00292-2 is a monoclonal option with an IF image at 1:50 (A00292 IF captions; M00292-2 catalog description and IF caption). For cross-species planning, all four list human, mouse, and rat reactivity, but their supplied tissue IHC images are human (catalog reactivity fields; IHC image captions).