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- Table of Contents
Plan chromogenic NFAT5 IHC in paraffin sections using the catalog antibody’s validated conditions. Compare nuclear and cytoplasmic staining with the tissue pattern, and account for the possible shift toward nuclear staining under hypertonic conditions (HPA tissue IHC; UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear and cytoplasmic staining (HPA tissue IHC) | |
| Staining pattern | Goblet cells: nuclear and cytoplasmic staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01815-3) | |
| Positive control | Bronchus+4 more · see all | |
| Negative control | Lymph node+3 more · see all |
| Fixation | Keep fixation conditions consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Staining and RNA show medium consistency (HPA tissue IHC) | |
| Regulation | Hypertonicity may raise nuclear signal (UniProt) | |
| Isoform / epitope | 5 isoforms; verify epitope coverage (UniProt) |
The catalog antibody protocol is accompanied by four published NFAT5 IHC procedures, each drawn from a target-verified PMC article.
| Sample | Paraffin-embedded human bladder cancer tissue; fixative not specified (datasheet A01815-3) |
| Fixation | Image fixative and duration unreported (datasheet A01815-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01815-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01815-3) |
| Primary antibody | Rabbit anti-NFAT5, 2-5μg/ml (datasheet A01815-3) |
| Primary incubation | Overnight at 4 °C (datasheet A01815-3) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A01815-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | NFAT5-positive staining in goblet cells of bronchus (HPA tissue IHC: High). HPA tissue profile: General nuclear and cytoplasmic expression. No signal in the no-primary control. |
NFAT5 should show nuclear and cytoplasmic staining, with the strongest reported tissue IHC signal in bronchial and nasopharyngeal goblet cells (HPA: general nuclear and cytoplasmic expression; High in goblet cells). NFAT5 is a nuclear, cytoplasmic and chromosome-associated transcription factor without a transmembrane segment (UniProt O94916: subcellular location and topology). Treat tissue comparisons as guides because HPA rates its IHC profile Approved, with medium consistency between staining and RNA expression (HPA: reliability).
| Goblet cells show clear nuclear staining with possible cytoplasmic staining in bronchus or nasopharynx. | This fits the reported High goblet-cell IHC signal and general nuclear/cytoplasmic profile (HPA: bronchus, nasopharynx and tissue profile). Score the nuclear and cytoplasmic compartments separately; a cytoplasmic component alone does not establish mislocalisation (HPA: tissue profile). |
| Strong staining outlines cell membranes while nuclei and cytoplasm remain largely unstained. | An isolated membrane pattern conflicts with the reported nuclear/cytoplasmic distribution and lack of a transmembrane segment (HPA: tissue profile; UniProt O94916: topology). Review morphology, detection and controls before assigning that signal to NFAT5 (general IHC practice). |
| Strong signal appears in cells reported as undetected, such as lymph-node germinal-center cells. | HPA reports NFAT5 as Not detected in those cells (HPA: lymph node). Consider antibody cross-reactivity or endogenous detection activity, and compare with a no-primary control (general IHC practice). HPA's medium consistency means this comparison is a warning rather than proof of nonspecificity (HPA: reliability). |
| Brown precipitate spreads across extracellular space, tissue folds and multiple cell types without clear boundaries. | Diffuse staining is difficult to assign to a compartment or cell type (general IHC practice). Check the no-primary control and detection reagents, then reassess blocking and washes (general IHC practice); this appearance alone cannot identify its cause. |
| A bronchus or nasopharynx section shows no goblet-cell signal. | The missing signal conflicts with HPA's High goblet-cell observations (HPA: bronchus and nasopharynx). Confirm that goblet cells are present on the section, then check antibody and detection controls (general IHC practice). One negative section does not establish absent NFAT5 expression. |
| Cell-type reference | Bronchial and nasopharyngeal goblet cells are reported High; adipocytes, adrenal glandular cells and several neural populations are Medium (HPA: tissue IHC). Use the named cell type, rather than the whole organ, when choosing and scoring a reference section (general IHC practice). |
| Physiological localisation | Nuclear distribution increases under hypertonic conditions, according to a by-similarity annotation (UniProt O94916: subcellular location). Record treatment conditions when comparing nuclear with cytoplasmic staining; the annotation does not supply an expected IHC intensity or a required nuclear-only pattern. |
| Antibody validation | The HPA tissue profile is Approved with medium staining–RNA consistency (HPA: reliability). Among listed HPA antibodies, HPA069711 has Approved IHC status, while the others have no listed IHC status (HPA: antibodies). Validation supports interpretation but does not make every unexpected positive specific (general IHC practice). |
| Protein form and epitope | UniProt lists five NFAT5 isoforms, an RHD at residues 264–443, no signal peptide and one annotated chain spanning residues 1–1531 (UniProt O94916: isoforms, domains and processing). These annotations do not identify the catalog antibody's epitope or establish equal recognition of every isoform. |
| IF/ICC Q: Where should NFAT5 appear? | A: Mainly in the nucleoplasm, with additional cytosolic signal (HPA: subcellular ICC-IF). This is a localisation comparison only; the HPA ICC-IF record does not provide an IF protocol or set the chromogenic IHC dilution. |
| Situation | Likely cause | Next action |
|---|---|---|
| Goblet cells in a reference section are unstained. | The section may lack identifiable target cells, or the IHC detection run may have failed (general IHC practice). | Confirm goblet-cell morphology in bronchus or nasopharynx, where HPA reports High signal (HPA: tissue IHC). Check the run's positive control and the IHC-validated antibody's instructions before adjusting general retrieval or detection steps (general IHC practice). |
| Signal is confined to cell membranes. | That distribution is inconsistent with reported nuclear/cytoplasmic localisation and no transmembrane segment (HPA: tissue profile; UniProt O94916: topology). | Compare with the no-primary control, inspect tissue edges and reassess whether staining follows cells or deposits (general IHC practice). Do not score an isolated membrane rim as the expected NFAT5 pattern. |
| Strong staining appears in HPA Not detected cells. | Cross-reactivity or endogenous detection activity is possible (general IHC practice); HPA lists lymph-node germinal-center cells as Not detected (HPA: lymph node). | Run a no-primary control and review blocking appropriate to the chromogenic detection system (general IHC practice). Interpret disagreement cautiously because the HPA tissue profile has medium staining–RNA consistency (HPA: reliability). |
| Background obscures nuclear boundaries. | Diffuse detection signal can prevent cell-level and compartment-level scoring (general IHC practice). | Check the no-primary control, reagent exposure, blocking and washes; adjust those general IHC steps only in response to the controls (general IHC practice). Score NFAT5 only where cellular boundaries remain interpretable. |
| Nuclear and cytoplasmic proportions differ between specimens. | NFAT5 occupies both compartments, and hypertonicity can increase nuclear distribution by similarity (HPA: tissue profile; UniProt O94916: subcellular location). | Document specimen conditions and score each compartment separately. Avoid calling cytoplasmic signal alone an artefact; HPA reports a general nuclear and cytoplasmic IHC pattern (HPA: tissue profile). |
| A new antibody gives a pattern unlike the HPA reference. | The HPA list does not assign IHC status to every antibody, and the record does not specify the new antibody's epitope or isoform coverage (HPA: antibodies; UniProt O94916: isoforms). | Check that the antibody is IHC validated, compare reference cell types and compartments, and include appropriate positive and no-primary controls (general IHC practice; HPA: tissue IHC). Avoid attributing the discrepancy to fixation sensitivity without target-specific evidence. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bronchus | Goblet cells | High | Protein (IHC) | HPA → |
| Nasopharynx | Goblet cells | High | Protein (IHC) | HPA → |
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Lymph node | Germinal center cells | Not detected | Protein (IHC) | HPA → |
| Parathyroid gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Seminal vesicle | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Soft tissue | Chondrocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot NFAT5 staining in paraffin sections by checking retrieval, compartment patterns, controls and scoring before interpreting biological differences.
Two antibodies have IHC images from paraffin-embedded human bladder and liver cancer sections (catalog IHC captions); A01815-3 also has IF images from A549 cells and human bladder cancer tissue (catalog IF captions).
A01815-3 will render with its human bladder cancer paraffin-section IHC image; its catalog also lists IF/ICC and human, mouse and rat reactivity (A01815-3 catalog). P01815 will render with its human liver cancer paraffin-section IHC image and targets phospho-NFAT5 Ser1197; its catalog lists human and mouse reactivity (P01815 catalog).
Which to pick: For total NFAT5 tissue IHC, choose A01815-3, whose IHC caption shows a human bladder cancer paraffin section with EDTA pH 8 retrieval and 2 μg/ml primary antibody; the fixative is unreported (A01815-3 IHC caption). For IF/ICC, choose A01815-3 because those applications are listed and IF images are supplied; P01815 has an IF image, but IF is absent from its listed applications (catalog applications and IF captions). For the broadest listed species reactivity, choose A01815-3 (human, mouse and rat); choose the polyclonal P01815 when phospho-NFAT5 Ser1197 is the target, noting that its IHC caption shows a human liver cancer paraffin section with Tris-EDTA pH 9 retrieval and leaves the fixative unreported (catalog reactivity; P01815 dilution data and IHC caption).