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- Table of Contents
Plan chromogenic IHC for ORM1 in paraffin sections using plasma positivity as the observed tissue pattern (HPA tissue IHC). The guide covers fixation, retrieval, antibody dilution and interpretation of a secreted protein (UniProt; datasheet PB9956).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Secreted (UniProt); plasma staining observed (HPA tissue IHC) | |
| Staining pattern | Plasma positivity; cellular pattern unresolved (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB9956) | |
| Positive control | Testis | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Secreted protein may stain away from its site of synthesis (HPA tissue IHC) | |
| Regulation | Associated with the acute-phase response (UniProt) | |
| Isoform / epitope | No isoforms listed; mature chain spans 19–201 (UniProt) |
Compare the catalog antibody’s IHC-P protocol with 4 published ORM1 IHC protocols (datasheet: PB9956; PMC8491347; PMC4916783; PMC9589312; PMC9467997).
| Sample | Paraffin-embedded human intestinal cancer tissue; fixative not specified (datasheet PB9956) |
| Fixation | Image fixative and duration unreported (datasheet PB9956); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB9956); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9956) |
| Primary antibody | Rabbit anti-ORM1, 0.5-1μg/ml (datasheet PB9956) |
| Primary incubation | Overnight at 4 °C (datasheet PB9956) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9956) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ORM1-positive staining in elongated or late spermatids of testis (HPA tissue IHC: High). HPA tissue profile: Positivity in plasma. No signal in the no-primary control. |
ORM1 is secreted, has no transmembrane segment, and is expressed by the liver before entering plasma (UniProt P02763). In tissue IHC, expect plasma-associated positivity and high staining in elongated or late spermatids; do not infer that every liver cell must stain (HPA tissue IHC). HPA rates its tissue profile Approved but cautions that the antibodies can target proteins from more than one gene (HPA tissue IHC).
| Plasma-associated staining, with high signal in elongated or late spermatids (HPA tissue IHC). | This matches the reported tissue pattern (HPA tissue IHC). Because ORM1 is secreted into plasma, extracellular signal need not identify the cell that produced it (UniProt P02763). |
| A dominant nuclear, membrane-rim, or other unexpected intracellular pattern. | That pattern is unsupported by ORM1's secreted, non-transmembrane annotation (UniProt P02763). Review morphology and controls before assigning it to ORM1; HPA vesicle and Golgi observations come from ICC-IF, not tissue IHC (HPA subcellular). |
| Strong staining confined to a cell population listed as not detected, such as adipocytes or respiratory epithelial cells (HPA tissue IHC). | Consider cross-reactivity or endogenous detection activity (general IHC practice). Check whether the signal instead follows plasma or extracellular material, since secreted ORM1 can appear away from its producing cells (UniProt P02763). |
| Broad, diffuse color across tissue and background, without a discernible plasma-associated or spermatid pattern. | This is difficult to interpret as specific ORM1 staining against the reported pattern (HPA tissue IHC). Background may arise from detection chemistry or nonspecific binding; inspect matched reagent controls (general IHC practice). |
| No staining in an adequately represented testis section containing elongated or late spermatids. | The reported high signal makes this a useful investigation trigger, not proof that ORM1 is absent (HPA tissue IHC). Check cell-stage representation and run conditions (general IHC practice). |
| Secretion and tissue origin (UniProt P02763). | Liver expression and secretion into plasma mean protein location can differ from RNA location (UniProt P02763; HPA tissue IHC). Interpret extracellular staining by location, without calling nearby cells producers. |
| Reported tissue contrast (HPA tissue IHC). | Testis elongated or late spermatids are reported High; selected adipocytes, glandular cells, respiratory epithelial cells, and other listed populations are Not detected (HPA tissue IHC). These are cell-specific comparisons, not whole-organ negatives. |
| Antibody scope and validation (HPA tissue IHC; HPA antibodies). | The tissue profile is Approved, while HPA cautions that antibodies target proteins from more than one gene (HPA tissue IHC). Listed IHC antibodies are Approved, so a matching stain still requires specificity-aware interpretation (HPA antibodies; HPA tissue IHC). |
| Processing and glycosylation (UniProt P02763). | ORM1 has a signal peptide at residues 1–18, a chain at 19–201, and five annotated glycosylation sites (UniProt P02763). These features describe the protein; the supplied sources do not establish an antigen-retrieval or fixation effect. |
| ICC-IF compartment evidence (HPA subcellular). | HPA reports mainly vesicles and additional Golgi localization in ICC-IF, with a multiple-gene antibody caution (HPA subcellular). Use this as qualified IF context; it does not replace the plasma-associated tissue IHC expectation (HPA tissue IHC). |
| Detection chemistry (general IHC practice). | Endogenous enzyme activity or nonspecific detection can add chromogenic signal (general IHC practice). Reagent controls help separate this from the reported ORM1 tissue pattern (HPA tissue IHC); no ORM1-specific susceptibility is established here. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected testis signal is absent (HPA tissue IHC). | Elongated or late spermatids may be missing from the section, or the staining run may have failed (general IHC practice). | Confirm those cells are present, inspect the positive control, and review antibody and detection steps before interpreting absence (general IHC practice). |
| Strong signal appears in a listed Not detected cell population (HPA tissue IHC). | Cross-reactivity, endogenous detection activity, or adjacent plasma-associated staining may explain it (general IHC practice; UniProt P02763). | Compare cell boundaries with extracellular material and review reagent controls; report unresolved signal as nonspecific or uncertain (general IHC practice). |
| A nuclear or membrane-rim pattern dominates. | That compartment assignment conflicts with secreted, non-transmembrane ORM1 topology (UniProt P02763). | Recheck morphology, antibody specificity, and detection controls before calling the stain ORM1-positive (general IHC practice; HPA tissue IHC). |
| Color spreads across the section and obscures the expected pattern. | Nonspecific binding or detection background can obscure localization (general IHC practice). | Review blocking, washes, antibody concentration, and detection controls; compare with plasma-associated and spermatid staining (general IHC practice; HPA tissue IHC). |
| Plasma-associated staining is mistaken for expression by adjacent cells. | ORM1 is produced by the liver and secreted into plasma; tissue protein and RNA locations can differ (UniProt P02763; HPA tissue IHC). | Score extracellular signal separately from cell-associated signal, and avoid assigning a producer cell from proximity alone (UniProt P02763). |
| Can IF/ICC use the same compartment call as tissue IHC? | HPA reports vesicles and additional Golgi localization in ICC-IF, while tissue IHC reports plasma positivity (HPA subcellular; HPA tissue IHC). | Interpret IF/ICC on its own guide page using its qualified compartment evidence; do not treat the ICC-IF pattern as a tissue IHC control (HPA subcellular; HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Caution, targets protein from more than one gene. Secreted protein, tissue location of RNA and protein is expected to differ.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Testis | Elongated or late spermatids | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot ORM1 staining in paraffin sections using the PB9956 tissue-IHC conditions, while accounting for secretion, glycosylation and plasma-associated signal.
PB9956 has real ORM1 IHC data from a human paraffin-embedded intestinal cancer section (catalog IHC caption). No IF data is supplied (catalog IF images; catalog IF dilution).
PB9956 is the sole card and shows IHC staining of a human paraffin-embedded intestinal cancer section (catalog cards; PB9956 IHC caption). It lists Human, Mouse and Rat reactivity and IHC among its applications (catalog reactivity; catalog applications).
Which to pick: Choose PB9956 for human paraffin-section chromogenic IHC: its figure documents EDTA retrieval at pH 8.0, 1 μg/ml primary antibody and DAB detection (PB9956 IHC caption). No IF/ICC pick is supported because PB9956 has no listed IF application, image or dilution; its clonality is unreported (catalog applications; catalog IF data; catalog clone). PB9956 lists Human, Mouse and Rat reactivity, but its supplied IHC figure covers human tissue only, and the fixative is unreported (catalog reactivity; PB9956 IHC caption).