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- Table of Contents
Use the HPA cytoplasmic tissue pattern and high staining in cortical neurons and seminiferous duct cells as PRKACA IHC references (HPA tissue IHC). Compare the catalog antibodies’ specificity and IHC dilutions before scoring stained cell types and compartments (datasheets; standard IHC practice).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining (HPA tissue IHC); nuclear translocation is possible (UniProt) | |
| Staining pattern | Widespread cytoplasmic staining across tissue cell types (HPA tissue IHC) | |
| Antigen retrieval | Tris-EDTA pH 9.0 HIER, 95–98 °C, 20 min (rule: nuclear antigen) | |
| Positive control | Cerebral cortex+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across paraffin sections (standard IHC practice; not target-specific) | |
| Caveat | A00653 also targets PKA β/γ catalytic subunits (datasheet: A00653) | |
| Regulation | Isoform 2 enriched in pachytene cells (UniProt) | |
| Isoform / epitope | 2 isoforms; isoform 2 is sperm-specific; check epitope coverage (UniProt) |
Compare the catalog antibody’s IHC-P protocol with published PRKACA IHC methods for FFPE breast tumors and adrenal tissues (PMC4261061; PMC5427838).
| Sample | Tissue sections; selected-image fixative not specified (standard IHC workflow) |
| Fixation | Image fixative and duration unreported (datasheet M00653-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat-induced epitope retrieval in Tris-EDTA buffer, pH 9.0, 20 min at 95–98 °C (standard rule: nuclear antigen) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit anti-PRKACA, 1:2000-1:10000 (datasheet M00653-1) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PRKACA-positive staining in neuronal cells of cerebral cortex (HPA tissue IHC: High). HPA tissue profile: Ubiquitous cytoplasmic expression. No signal in the no-primary control. |
PRKACA should show predominantly cytoplasmic staining in paraffin sections, including neuronal cells in cerebral cortex and cells in testis seminiferous ducts (HPA: ubiquitous cytoplasmic expression; High in both cell groups). Nuclear or membrane-associated signal can also be biologically plausible (UniProt P17612: subcellular location). PRKACA has no transmembrane segment (UniProt P17612: topology). HPA rates its tissue IHC profile Approved, with medium consistency between staining and RNA data (HPA: tissue IHC reliability).
| Clear cytoplasmic staining in cortical neuronal cells or cells in testis seminiferous ducts. | This matches the strongest supplied tissue examples: HPA reports High staining in both cell groups (HPA: tissue IHC). Compare identifiable cells with their surrounding tissue and controls; a brown deposit alone does not establish cell identity (standard IHC practice). |
| Nuclear or membrane-adjacent staining accompanies a convincing cytoplasmic pattern. | Do not reject it solely by compartment: free catalytic subunit can enter the nucleus, and PRKACA can associate with membranes (UniProt P17612: subcellular location). Judge whether the pattern is cellular and reproducible with the same staining workflow (standard IHC practice). |
| Staining is confined to luminal debris, extracellular material, or an implausible cell population. | A deposit without a coherent cellular pattern warrants an artefact check (standard IHC practice). Because HPA describes ubiquitous cytoplasmic expression and supplies no negative tissue, staining in an unexpected cell population alone cannot prove cross-reactivity (HPA: tissue IHC). |
| Weak, widespread brown haze obscures cell borders and compartment assignment. | Treat the slide as difficult to interpret until background is controlled (standard IHC practice). Compare a no-primary control and review blocking, antibody concentration, washes, and detection chemistry; haze cannot be scored as PRKACA localisation (standard IHC practice). |
| No cellular signal appears in a cortical neuronal or testis seminiferous-duct positive reference. | This conflicts with HPA's High observations in those cell groups, but does not by itself show biological absence (HPA: tissue IHC). Check section quality and the staining workflow with appropriate controls before interpreting the test specimen (standard IHC practice). |
| Tissue and cell choice | Cerebral cortex neuronal cells and testis seminiferous-duct cells provide High examples; adipocytes and adrenal glandular cells are Medium (HPA: tissue IHC). HPA lists Low examples but no negative tissue, so a Low example is a poor absence control (HPA: tissue IHC). |
| Compartment | Cytoplasm is the main tissue IHC expectation (HPA: ubiquitous cytoplasmic expression). UniProt also lists nucleus, membrane, mitochondrion, and cilium among locations; those annotations do not establish that each compartment will resolve in routine chromogenic sections (UniProt P17612: subcellular location; standard IHC practice). |
| Isoform coverage | Isoform 1 is ubiquitous; isoform 2 is sperm-specific, enriched in pachytene spermatocytes and undetected in round spermatids (UniProt P17612: tissue specificity). The supplied record gives no antibody epitope, so a testis stain cannot be assigned to either isoform from this evidence alone (UniProt P17612: isoforms). |
| Antibody evidence | CAB010361 has Approved IHC status in the supplied HPA list (HPA: antibodies). The tissue profile is Approved with medium staining–RNA consistency, so it supports a pattern expectation without establishing that every positive deposit is specific (HPA: tissue IHC reliability; standard IHC practice). |
| IF/ICC: should it show the same location? | Expect mainly cytosolic signal, but treat finer structures cautiously: HPA marks cytosol, microtubules, cytokinetic bridge, primary cilium, and basal body as uncertain and cautions that its subcellular summary uses antibodies targeting proteins from multiple genes (HPA: subcellular ICC-IF). HPA lists HPA071185 as ICC Approved (HPA: antibodies). |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected positive tissue has no stain. | The result disagrees with HPA's High cortical neuronal and testis seminiferous-duct examples; an incomplete IHC workflow is one possible cause (HPA: tissue IHC; standard IHC practice). | Confirm the intended cells are present, inspect a concurrently stained positive control, and review antigen retrieval, primary incubation, and detection steps (standard IHC practice). No PRKACA-specific retrieval condition is supplied. |
| All cells and empty spaces look uniformly brown. | Diffuse background or endogenous detection activity may obscure cellular staining (standard IHC practice). This appearance does not establish ubiquitous PRKACA protein (HPA: tissue IHC; standard IHC practice). | Inspect a no-primary control; review blocking, reagent concentration, washes, and the detection system, including its endogenous-activity controls where applicable (standard IHC practice). |
| Signal seems exclusively nuclear. | Nuclear PRKACA is possible after catalytic-subunit translocation, but an exclusively nuclear chromogenic pattern is not the supplied HPA tissue profile (UniProt P17612: subcellular location; HPA: ubiquitous cytoplasmic expression). | Verify nuclear and cytoplasmic boundaries with the counterstain and compare positive-reference and no-primary sections before assigning localisation (standard IHC practice). |
| A membrane or ciliary accent dominates the section. | These locations are biologically plausible (UniProt P17612: subcellular location), while HPA's finer ICC-IF locations are uncertain and its tissue profile is cytoplasmic (HPA: subcellular ICC-IF; HPA: tissue IHC). | Check whether the accent follows identifiable cells across fields and controls; report the observed compartment without treating it as the routine tissue pattern (standard IHC practice; HPA: tissue IHC). |
| Testis staining differs among seminiferous-duct cells. | HPA reports High staining for cells in seminiferous ducts without resolving each cell stage (HPA: tissue IHC). UniProt reports stage-dependent isoform 2 expression, but antibody isoform coverage is unspecified (UniProt P17612: tissue specificity). | Record the identifiable stained cell populations and intensity; avoid assigning isoform 2 or declaring a stage-specific negative from this antibody evidence alone (HPA: tissue IHC; UniProt P17612: isoforms). |
| A Low HPA example stains, or a Medium example looks weak. | HPA levels describe reported observations, not a universal pass/fail threshold for every section (HPA: tissue IHC; standard IHC practice). HPA supplies no negative tissue in this payload (HPA: tissue IHC). | Score cell identity, compartment, and control performance together; use the High cortical neuronal or testis seminiferous-duct examples to assess whether the run can detect the expected pattern (HPA: tissue IHC; standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Testis | Cells in seminiferous ducts | High | Protein (IHC) | HPA → |
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Lymphoid tissue | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: PRKACA is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot PRKACA staining in paraffin sections by checking retrieval, compartment patterns, antibody specificity and the controls used for scoring.
IHC images show PRKACA staining in human thyroid carcinoma and mouse and rat stomach (M00653-1 catalog images); IHC and IF images show human colon carcinoma and HeLa cells, respectively (A00653 catalog images).
M00653-1 is listed for human, mouse and rat IHC and IF; its IHC images show human thyroid carcinoma and mouse and rat stomach (M00653-1 catalog). A00653 is listed for human, mouse, pig and rat IHC and IF; its images show paraffin-embedded human colon carcinoma by IHC and HeLa cells by IF (A00653 catalog).
Which to pick: For tissue IHC, choose the PRKACA monoclonal M00653-1 when its human thyroid carcinoma or mouse and rat stomach IHC examples match your sample (M00653-1 catalog images); tissue processing and fixative are unreported in those captions (M00653-1 catalog images). For IF, A00653 has a HeLa cell image, while its own IHC image supports paraffin sections with fixative unreported (A00653 catalog images). For the broadest listed species coverage among the rendered cards, choose A00653, which lists human, mouse, pig and rat reactivity (A00653 catalog); its title identifies alpha, beta and gamma catalytic subunits, so assess isoform specificity for a PRKACA-specific experiment (A00653 catalog title).