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- Table of Contents
Plan paraffin-section PTN IHC around cytoplasmic staining in cortical neurons, parathyroid glandular cells and pachytene spermatocytes (HPA tissue IHC). This guide covers fixation, antibody use, detection and scoring while accounting for PTN secretion and cell-surface binding (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Observed cytoplasmic staining (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic neurons, spermatocytes and endocrine cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01368-2) | |
| Positive control | Cerebral cortex+3 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Secreted PTN binds cell-surface proteoglycans (UniProt) | |
| Regulation | Expression induction is unspecified (UniProt) | |
| Isoform / epitope | No isoforms annotated; mature chain spans residues 33–168 (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet A01368-2) with published PTN protocols for thyroid, pancreatic, and sheep tooth-socket sections (PMC4767803; PMC5467077; PMC10099163).
| Sample | Paraffin-embedded human glioma tissue; fixative not specified (datasheet A01368-2) |
| Fixation | Image fixative and duration unreported (datasheet A01368-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01368-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01368-2) |
| Primary antibody | Rabbit anti-PTN, 2-5 μg/ml (datasheet A01368-2) |
| Primary incubation | Overnight at 4 °C (datasheet A01368-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A01368-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PTN-positive staining in neuronal cells of cerebral cortex (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in spermatocytes, neurons in cerebral cortex, and endocrine cells in parathyroid and pituitary gland. No signal in the no-primary control. |
PTN is a secreted protein with no transmembrane segment (UniProt P21246 topology). In paraffin-section IHC, HPA reports cytoplasmic staining in cerebral cortex neurons, parathyroid glandular cells, pachytene spermatocytes, and anterior pituitary cells (HPA tissue IHC). HPA rates its tissue pattern Enhanced, while noting that a secreted protein’s RNA-producing cells and protein location may differ (HPA tissue IHC).
| Distinct cytoplasmic staining in cerebral cortex neurons, parathyroid glandular cells, or pachytene spermatocytes. | These are HPA High IHC examples and suitable reference patterns (HPA tissue IHC). Compare staining with the expected cell population and a matched negative control; intensity alone does not establish specificity (general IHC practice). |
| Predominantly nuclear staining, with little cytoplasmic signal in an HPA-positive cell population. | A nuclear-dominant pattern does not match HPA’s reported cytoplasmic tissue staining or its supported endoplasmic-reticulum ICC-IF location (HPA tissue IHC; HPA subcellular). Check nuclear counterstain, detection controls, and antibody specificity before calling it PTN (general IHC practice). |
| Strong staining in an HPA-listed undetected cell population, such as adrenal glandular cells or caudate glial cells. | That result differs from the specified HPA cell-level observations, though it does not prove universal absence of PTN in those tissues (HPA tissue IHC). Assess cross-reactivity and endogenous detection activity with appropriate controls (general IHC practice). |
| Diffuse chromogen across many cell types, including negative-control areas. | A widespread pattern obscures the cell-specific cytoplasmic observations reported by HPA (HPA tissue IHC). Review primary-omission and detection controls, blocking, washing, and development time to identify background (general IHC practice). |
| No staining in cerebral cortex neurons, parathyroid glandular cells, and pachytene spermatocytes. | These populations are reported High, so a blank run calls for an assay check before interpreting other sections as negative (HPA tissue IHC). Verify tissue identity, antibody IHC validation, reagent activity, retrieval conditions, and controls (general IHC practice). |
| Cell and tissue selection | HPA reports High staining in cortex neurons, parathyroid glandular cells, and pachytene spermatocytes; anterior pituitary cells are Medium (HPA tissue IHC). Select a named positive cell population for run assessment rather than treating every cell in that tissue as positive (general IHC practice). |
| Secretion and compartment | PTN has a signal peptide and is secreted, with no transmembrane segment (UniProt P21246). HPA describes cytoplasmic tissue staining and warns that RNA and protein locations may differ for secreted proteins (HPA tissue IHC). Extracellular signal therefore needs tissue and control context before assignment. |
| Processing and unknown epitope | UniProt annotates signal peptide residues 1–32 and mature PTN residues 33–168, with no propeptide or annotated isoform (UniProt P21246). The supplied sources give no antibody epitope, so they cannot establish which processed form an IHC stain detects or predict a retrieval condition. |
| Antibody evidence | CAB017685 has Enhanced IHC validation; HPA073913 has Approved ICC validation with no IHC status supplied (HPA antibodies). Use an IHC-validated antibody for the paraffin-section comparison and interpret each antibody within its listed application (HPA antibodies; general IHC practice). |
| IF/ICC comparison — Q: What location is reported? | A: HPA reports supported endoplasmic-reticulum localization from ICC-IF and lists AF22 images (HPA subcellular). This is an IF/ICC comparison point, while the paraffin IHC expectation comes from HPA’s cytoplasmic tissue observations (HPA tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| The known-positive section is blank. | The result conflicts with HPA High staining in the specified cortex, parathyroid, or testis cell populations (HPA tissue IHC); the failed assay step is undetermined. | Confirm the named cells are present, check the IHC antibody and detection controls, then optimize retrieval and dilution as general paraffin-IHC variables (HPA antibodies; general IHC practice). |
| Only nuclei are strongly colored. | A nuclear-dominant pattern differs from HPA’s cytoplasmic tissue profile and supported endoplasmic-reticulum ICC-IF location (HPA tissue IHC; HPA subcellular). | Check the counterstain and primary-omission control; compare with an HPA High cell population before assigning the signal to PTN (HPA tissue IHC; general IHC practice). |
| Negative-control areas show broad brown staining. | The pattern may reflect endogenous enzyme activity, nonspecific detection, or excess chromogen development (general chromogenic IHC practice). | Run primary-omission and relevant enzyme-block controls, inspect washing and blocking, and adjust development time (general chromogenic IHC practice). |
| HPA-undetected glandular cells stain as strongly as the positive reference. | For example, adrenal glandular cells are Not detected, whereas parathyroid glandular cells are High in HPA’s specified observations (HPA tissue IHC). | Compare the cell populations side by side, inspect negative controls, and assess cross-reactivity before scoring that staining as PTN (HPA tissue IHC; general IHC practice). |
| Signal looks extracellular rather than cytoplasmic. | PTN is secreted, and HPA cautions that RNA and protein locations can differ; its reported tissue IHC profile is cytoplasmic in specified cells (UniProt P21246; HPA tissue IHC). | Record the extracellular distribution separately, verify cell-associated signal in an HPA High reference, and assess background controls before interpreting deposits (HPA tissue IHC; general IHC practice). |
| An ICC-positive antibody gives an uncertain paraffin-IHC pattern. | HPA073913 is Approved for ICC but has no IHC status supplied; CAB017685 has Enhanced IHC validation (HPA antibodies). | Use an IHC-validated antibody for the paraffin-section comparison, and judge the result against HPA’s named positive and undetected cell populations (HPA antibodies; HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data. Secreted protein, tissue location of RNA and protein is expected to differ.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Parathyroid gland | Glandular cells | High | Protein (IHC) | HPA → |
| Testis | Pachytene spermatocytes | High | Protein (IHC) | HPA → |
| Pituitary gland | Cells in anterior | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot PTN staining in paraffin sections by checking retrieval, cellular context and controls before comparing chromogenic signal across samples.
The catalog antibodies have paraffin-section IHC images from human glioma, human brain, mouse brain, and rat brain (catalog image captions). No IF/ICC image or validation is supplied (catalog applications and image captions).
A01368-2 has paraffin-section IHC images from human glioma, mouse brain, and rat brain; M01368 has images from mouse and rat brain (each SKU’s IHC image captions). PA1414 has paraffin-section IHC images from human glioma and human brain (PA1414 IHC image captions).
Which to pick: For tissue IHC, choose the rabbit monoclonal M01368 for mouse or rat brain sections, or A01368-2 and PA1414 for the pictured human tissues; each caption documents paraffin sections with EDTA retrieval at pH 8.0, while the fixative is unreported (catalog antibody details; each SKU’s IHC image captions). For cross-species IHC, A01368-2 has the broadest pictured coverage—human, mouse, and rat—and lists reactivity with all three (A01368-2 IHC image captions; catalog reactivity). No listed SKU is validated for IF/ICC, so select an IF/ICC-validated antibody for that application (catalog applications and IF image captions).