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- Table of Contents
Plan chromogenic paraffin-section RPA2 staining around its ubiquitous nuclear tissue pattern (HPA tissue IHC). This guide provides a catalog-antibody starting concentration of 2 µg/mL (datasheet M02067-2) and a scoring consideration for DNA damage-associated nuclear foci (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear staining in tissue (HPA tissue IHC) | |
| Staining pattern | Widespread nuclear staining across cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M02067-2) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific) | |
| Caveat | DNA damage can shift nuclear signal into foci (UniProt) | |
| Regulation | Expression regulation is unreported (UniProt) | |
| Isoform / epitope | 3 isoforms; epitope coverage is unspecified (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet: M02067-2) with four published tissue protocols for RPA2 or phosphorylated RPA2 (PMC9743555; PMC5354728; PMC4344740; PMC10063624).
| Sample | Paraffin-embedded human spleen tissue; fixative not specified (datasheet M02067-2) |
| Fixation | Image fixative and duration unreported (datasheet M02067-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M02067-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M02067-2) |
| Primary antibody | Mouse monoclonal (clone 3B2E9) anti-RPA2, 2 μg/ml (datasheet M02067-2) |
| Primary incubation | Overnight at 4 °C (datasheet M02067-2) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet M02067-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | RPA2-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Ubiquitous nuclear expression. No signal in the no-primary control. |
RPA2 should appear primarily in nuclei across many cell types in paraffin tissue sections: HPA describes ubiquitous nuclear expression with supported IHC reliability (HPA tissue IHC). Nuclear staining fits its nuclear location and lack of a transmembrane segment (UniProt P15927). HPA reports high staining in selected cell populations, including bone marrow hematopoietic cells, breast glandular cells and bronchial respiratory epithelial cells (HPA tissue IHC).
| Nuclei stain in the expected tissue cell population, with little staining outside nuclei. | This matches the reported ubiquitous nuclear profile (HPA tissue IHC) and nuclear localisation (UniProt P15927). Compare the relevant cell population with its HPA entry; a high rating for one population does not set an intensity threshold for every nucleus. |
| The strongest apparent signal is cytoplasmic, membranous or extracellular. | That distribution conflicts with the reported nuclear pattern (HPA tissue IHC; UniProt P15927). Treat it as possible nonspecific staining or detection artefact, and assess whether a nuclear component remains distinguishable. |
| Signal appears mainly in a cell population other than the one selected as the expected positive control. | Check the tissue and cell annotation before calling cross-reactivity: HPA reports broad nuclear expression, while its listed high levels refer to particular populations (HPA tissue IHC). A discordant pattern may reflect nonspecific binding or endogenous detection activity (general IHC practice). |
| Colour spreads across tissue structures and obscures nuclear boundaries. | This is background rather than an interpretable nuclear pattern (HPA tissue IHC; general IHC practice). Review the negative control and detection reagents before assigning the colour to RPA2. |
| A known HPA high-staining cell population shows no nuclear signal. | The result conflicts with the reported positive pattern for that population (HPA tissue IHC). Check tissue identity, antibody performance and assay controls; this section has no target-specific evidence that fixation caused the loss. |
| Tissue and cell selection | HPA rates hematopoietic cells in bone marrow, glandular cells in breast and respiratory epithelial cells in bronchus as High (HPA tissue IHC). These are documented comparison populations, while the overall profile is ubiquitous nuclear staining (HPA tissue IHC). |
| Nuclear foci | RPA2 can redistribute to discrete nuclear foci after DNA damage in an ATR-dependent manner (UniProt P15927). Their absence in an ordinary paraffin section does not by itself contradict the expected nuclear IHC pattern (HPA tissue IHC; UniProt P15927). |
| Antibody evidence | HPA lists IHC as Supported for HPA026306, HPA026309 and CAB016538 (HPA antibodies). That supports comparison with HPA tissue patterns, but does not establish that an unlisted antibody or every assay condition will reproduce them. |
| Isoforms and modification | UniProt lists three RPA2 isoforms and phosphorylated residues (UniProt P15927). The supplied sources do not locate an antibody epitope or show how isoforms or phosphorylation change this IHC stain; avoid assigning pattern differences to either. |
| IF/ICC Q&A | Where is RPA2 seen by IF/ICC? HPA reports enhanced nucleoplasm and nuclear-body localisation; its listed ICC images include A-431, U-251MG and U2OS (HPA subcellular). This is an IF/ICC observation, not an IHC intensity standard. |
| Fixation sensitivity | Target-specific effects of fixation or antigen retrieval on RPA2 staining are unreported in the supplied UniProt and HPA records. Use the assay's documented controls to assess a paraffin-section result (general IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| The positive-control section has no nuclear colour. | An assay step or antibody may have failed; HPA documents high staining in specified cell populations, but gives no RPA2-specific fixation explanation here (HPA tissue IHC). | Confirm that the chosen cell population matches its HPA annotation, then inspect reagent validity, retrieval, dilution, detection and counterstain against the assay controls (general IHC practice). |
| Staining is predominantly cytoplasmic or membranous. | This conflicts with the nuclear location (UniProt P15927; HPA tissue IHC). Nonspecific binding or detection background is possible (general IHC practice). | Compare with a reagent-omission control and a documented HPA positive tissue; score RPA2 only where a convincing nuclear signal remains (HPA tissue IHC; general IHC practice). |
| Many tissue structures show uniform brown haze. | Diffuse colour can mask nuclear localisation and may arise from nonspecific staining or detection background (general IHC practice). | Review the negative control, blocking and detection steps; adjust the assay only against its controls, then reassess whether nuclei are distinct (general IHC practice). |
| Only an unexpected cell population appears strongly positive. | A cell-identity mismatch, nonspecific binding or endogenous detection activity may explain the result (general IHC practice). HPA's high ratings are cell-population specific (HPA tissue IHC). | Verify histology and the HPA cell annotation; compare the suspect population with control staining before treating it as RPA2-specific (HPA tissue IHC; general IHC practice). |
| The nuclear stain is present, but no discrete foci are visible. | Foci are reported after DNA damage (UniProt P15927); the HPA tissue IHC profile is ubiquitous nuclear staining and does not require visible foci (HPA tissue IHC). | Interpret the nuclear IHC result on its own merits. Reserve claims about damage-induced foci for an experiment designed to assess that response (UniProt P15927; general IHC practice). |
| Two antibodies yield different nuclear intensities. | HPA supports IHC staining for its listed antibodies, but the supplied record does not establish matched epitopes or identical intensities (HPA antibodies). | Check each antibody's own validation and assay controls, then compare compartment and cell population before comparing intensity (HPA antibodies; HPA tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Endocrine cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: RPA2 is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Use the catalog antibody’s paraffin-section result as the starting point, then judge staining against RPA2’s predominantly nuclear localisation (datasheet M02067-2; HPA subcellular).
The catalog includes anti-RPA2 IHC images from human tissues and mouse and rat liver (catalog IHC captions), plus HeLa IF images for three human-reactive antibodies (catalog IF captions; catalog reactivity).
M02067-2 has a human spleen IHC image, and A02067-1 has a human mammary cancer IHC image (respective IHC captions). M02067-5 has human kidney, mouse liver and rat liver IHC images, while A30447 has a human lung carcinoma IHC image (respective IHC captions).
Which to pick: For paraffin-section IHC, choose M02067-2 for human spleen or A02067-1 for human mammary cancer; both captions document EDTA pH 8.0 retrieval and DAB detection, but neither reports the fixative (respective IHC captions). For IF/ICC, A02067-1 and M02067-2 both list those applications and show HeLa IF staining (catalog applications; respective IF captions). For IHC across human, mouse and rat samples, choose M02067-5, whose reactivity list covers all three species and whose IHC captions show human kidney and mouse and rat liver (catalog reactivity; M02067-5 IHC captions).