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- Table of Contents
Plan paraffin section IHC for RPL4 using the reported cytoplasmic tissue pattern (HPA tissue IHC). Compare staining with appropriate controls, since antibody staining has low concordance with RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasm in most tissues (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining across most tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A05175-1) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Staining reliability is uncertain owing to low RNA concordance (HPA tissue IHC) | |
| Regulation | No expression regulation annotated (UniProt) | |
| Isoform / epitope | No isoforms annotated; mature chain spans residues 2–427 (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A05175-1) is accompanied by published protocols for colorectal cancer tissue (PMC13474844) and rat lung tissue (PMC9761115).
| Sample | Paraffin-embedded human colon cancer tissue; fixative not specified (datasheet A05175-1) |
| Fixation | Image fixative and duration unreported (datasheet A05175-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A05175-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A05175-1) |
| Primary antibody | Rabbit anti-RPL4, 1:50 recommended; image 1:100 (datasheet A05175-1) |
| Primary incubation | Overnight at 4 °C (datasheet A05175-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A05175-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | RPL4-positive staining in glandular cells of adrenal gland (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic expression in most tissues. No signal in the no-primary control. |
RPL4 is a cytoplasmic ribosomal protein with no transmembrane segment (UniProt P36578: function, location, topology). In paraffin sections, expect cytoplasmic staining in many cell types, including colon glandular cells, bronchial respiratory epithelial cells and cerebral cortex neurons (HPA tissue IHC: Medium). Treat the pattern as provisional: HPA rates the tissue IHC profile Uncertain because antibody staining and RNA expression show low consistency (HPA tissue IHC: reliability).
| Cytoplasmic staining in colon glandular cells, bronchial respiratory epithelial cells or cerebral cortex neurons. | This matches the reported compartment and examples of Medium tissue staining (HPA tissue IHC: profile and levels; UniProt P36578: cytoplasm). Assess the named cells within each section; a positive cell population does not imply that every cell in that tissue must stain (HPA tissue IHC: cell-specific entries). |
| Staining is confined to nuclei, cell borders or an apparent membrane rim, with little cytoplasmic signal. | A dominant noncytoplasmic IHC pattern conflicts with the reported tissue profile and cytoplasmic location; check specificity and staining controls (HPA tissue IHC: cytoplasmic profile; UniProt P36578: cytoplasm, no transmembrane segment). Focal nucleolar signal alone is less decisive because that additional location is Uncertain in ICC-IF (HPA subcellular). |
| A purported positive result is strongest in adipocytes, cardiomyocytes or endometrial stromal cells. | These named cell populations are reported Not detected by tissue IHC (HPA tissue IHC: negative entries). Check cell identification, primary antibody controls and detection controls for possible cross-reactivity or endogenous activity (general IHC practice). HPA's Uncertain tissue reliability makes this a flag for verification, not proof of an artefact (HPA tissue IHC: reliability). |
| Color spreads evenly across tissue, empty spaces or unrelated cell populations. | Diffuse staining that obscures cellular boundaries is difficult to score as cytoplasmic RPL4 (HPA tissue IHC: cytoplasmic profile). Review blocking, wash steps, chromogen development and detection controls for nonspecific or endogenous signal (general IHC practice); do not interpret a uniform haze as broad expression. |
| A section expected to contain colon glandular cells shows no detectable staining. | HPA reports Medium staining in that cell population, so first confirm the cells are present and compare a documented positive section processed in the same run (HPA tissue IHC: colon glandular cells; general IHC practice). An absent result may reflect an assay failure, but the Uncertain HPA rating prevents treating one negative slide as biological absence (HPA tissue IHC: reliability). |
| Reported tissue pattern and confidence | HPA describes cytoplasmic expression in most tissues but rates tissue IHC Uncertain because staining and RNA data have low consistency (HPA tissue IHC: profile, reliability). Use the named cell populations as comparison points, not as an absolute expression map. |
| Cell population within a tissue | HPA reports Medium staining in colon glandular cells but Not detected in adipocytes and cardiomyocytes (HPA tissue IHC: positive and negative entries). Score the specified cells rather than assigning one intensity to an entire organ section. |
| Antibody validation | The listed antibody HPA034600 is rated Uncertain for IHC and Supported for ICC (HPA antibodies: validation status). The ICC rating does not upgrade confidence in paraffin-section IHC; corroborate unexpected IHC patterns with appropriate controls (general IHC practice). |
| Compartment and topology | UniProt places RPL4 in the cytoplasm and lists no transmembrane segment (UniProt P36578: location, topology). HPA ICC-IF supports endoplasmic reticulum and cytosol localization; nucleoli and nuclear bodies are additional Uncertain locations (HPA subcellular). |
| Target-specific fixation sensitivity | No target-specific fixation effect is supplied by UniProt or HPA here (source scope). Optimize section preparation using routine IHC controls if needed (general IHC practice); do not infer an RPL4 retrieval requirement or predict a changed tissue result from these records. |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in colon glandular cells. | The expected Medium cell-population result is missing, though the tissue IHC record is Uncertain (HPA tissue IHC: colon, reliability). | Confirm glandular cells are present; check a documented positive section, primary antibody inclusion and detection reagents from the same run (general IHC practice). |
| Strong staining in adipocytes or cardiomyocytes. | Those cells are reported Not detected, so cell misidentification or assay background is possible (HPA tissue IHC: negative entries; general IHC practice). | Recheck morphology and compare primary-omission and detection controls before calling expression; treat disagreement as unresolved if controls are clean (general IHC practice; HPA tissue IHC: Uncertain). |
| Mostly nuclear or membrane-rim staining. | This differs from the cytoplasmic tissue pattern and lacks support from the no-transmembrane topology (HPA tissue IHC: profile; UniProt P36578: topology). | Check cellular boundaries and control sections; review antibody specificity before scoring. Interpret small nucleolar foci cautiously because their ICC-IF assignment is Uncertain (general IHC practice; HPA subcellular). |
| Uniform brown haze obscures cells. | Background or overdeveloped chromogen can prevent compartment scoring (general IHC practice). | Compare a primary-omission control, inspect blocking and washes, and adjust detection development within the assay workflow (general IHC practice). |
| Staining varies sharply between adjacent sections. | Cell composition, section handling or detection variation can change the apparent pattern (general IHC practice). | Compare the same named cell population in matched sections and include a positive control in each run; avoid whole-tissue intensity comparisons (general IHC practice; HPA tissue IHC: cell-specific entries). |
| ICC-IF appears positive but paraffin IHC does not. | HPA rates the listed antibody Supported for ICC and Uncertain for IHC, so the applications have different validation evidence (HPA antibodies: validation status). | Assess each assay with its own controls and report the IHC result as unresolved; do not transfer the ICC confidence rating to paraffin IHC (general IHC practice; HPA antibodies: validation status). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Uncertain — Low consistency between antibody staining and RNA expression data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Caudate | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Cerebellum | Purkinje cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | Not detected | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Kidney | Cells in glomeruli | Not detected | Protein (IHC) | HPA → |
Troubleshoot RPL4 staining in paraffin sections by checking retrieval, cytoplasmic localisation, controls and scoring before interpreting differences between samples.
Anti-RPL4 antibodies have IHC images from human, mouse and rat paraffin sections (A05175-1 and A05175 captions; A05175-1 reactivity) and IF images from human U-2 OS cells (M05175 caption).
A05175-1 has IHC images from human colon cancer, mouse bladder and rat bladder paraffin sections (A05175-1 captions). A05175 has IHC images from rat kidney and mouse brain paraffin sections (A05175 captions); M05175 has IF data from human U-2 OS cells (M05175 caption).
Which to pick: For tissue IHC, choose A05175-1 for its human, mouse and rat reactivity and IHC application listing (A05175-1 catalog), or A05175 for its illustrated rat kidney and mouse brain staining (A05175 captions). For IF/ICC, choose polyclonal A05175-1 when both applications or human, mouse and rat reactivity matter (A05175-1 catalog), or polyclonal M05175 for IF in human cells (M05175 catalog and caption). The IHC captions describe paraffin sections with EDTA pH 8.0 retrieval for A05175-1 and citrate pH 6.0 retrieval for A05175; neither reports the tissue fixative (A05175-1 and A05175 captions).