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- Table of Contents
Plan chromogenic IHC on paraffin sections using the nuclear and cytoplasmic S100B pattern seen in CNS glia and peripheral nerves (HPA tissue IHC). This guide covers specimen handling, staining controls and interpretation.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear and cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Nuclear and cytoplasmic staining in CNS, nerves and adipocytes (HPA tissue IHC) | |
| Antigen retrieval | Tris-EDTA pH 9.0 HIER, 95–98 °C, 20 min (rule: nuclear antigen) | |
| Positive control | Breast+4 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image M00979-1) | |
| Caveat | Secretion may complicate tissue RNA–protein correlation (HPA tissue IHC) | |
| Regulation | Expression regulation not specified (UniProt) | |
| Isoform / epitope | No isoforms listed; mature chain spans residues 2–92 (UniProt) |
Compare the catalog antibody’s IHC-P protocol with four published S100B IHC workflows (PMC4003764; PMC1769505; PMC10906296; PMC5339465).
| Sample | Paraffin-embedded Rat cerebral cortex tissue; fixative not specified (datasheet M00979-1) |
| Fixation | Image fixative and duration unreported (datasheet M00979-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat-induced epitope retrieval in Tris-EDTA buffer, pH 9.0, 20 min at 95–98 °C (standard rule: nuclear antigen) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit monoclonal (clone BCB-19) anti-S100B, 1:50 recommended; image 1:500 (datasheet M00979-1) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | S100B-positive staining in myoepithelial cells of breast (HPA tissue IHC: High). HPA tissue profile: Nuclear and cytoplasmic expression mainly in CNS, peripheral nerves, adipocytes and subset of lymphoid cells. No signal in the no-primary control. |
S100B can localize to the cytoplasm and nucleus and can be secreted; it has no transmembrane segment (UniProt P04271). In tissue sections, expect nuclear and cytoplasmic staining chiefly in CNS glia and peripheral nerves, with staining also reported in adipocytes and selected other cells (HPA: tissue IHC profile). HPA rates its tissue staining evidence Enhanced, while noting medium consistency with RNA data and a complex RNA–protein relationship for a secreted protein (HPA: tissue IHC reliability).
| Strong nuclear and cytoplasmic staining in glial cells of cerebral cortex, caudate or hippocampus (HPA: High in glial cells). | This fits the reported tissue pattern and UniProt localization (HPA: tissue IHC profile; UniProt P04271). Judge the signal by cell identity and compartment together: staining elsewhere on the section does not establish a positive glial result. HPA’s Enhanced rating supports the pattern, but its stated RNA–protein consistency is medium (HPA: tissue IHC reliability). |
| High staining in cerebellar Bergmann glia, especially cytoplasm or membrane, or in a peripheral nerve (HPA: High in both). | These are reported positive structures (HPA: cerebellum and soft tissue IHC). The Bergmann glia description is specific to cerebellum; it does not make isolated membrane staining in every tissue an expected S100B pattern. Compare morphology and the paired nuclear or cytoplasmic distribution before scoring an unfamiliar structure (HPA: tissue IHC profile). |
| A membrane-only outline or staining confined to an unexpected compartment, without the expected cellular pattern (HPA: tissue IHC profile). | Treat this as a possible artifact or nonspecific signal and recheck morphology, controls and detection. UniProt lists cytoplasm, nucleus and secretion, with no transmembrane segment (UniProt P04271); secretion alone does not validate a crisp cell-surface outline. HPA’s cerebellar Bergmann glia entry is a tissue-specific cytoplasm/membrane observation (HPA: cerebellum IHC). |
| Prominent staining in cells expected to lack S100B, such as adrenal glandular cells or bronchial respiratory epithelium (HPA: Not detected). | Check for antibody cross-reactivity or endogenous detection activity before calling these cells positive. HPA reports those particular cell populations as not detected; it does not classify every cell in either organ as negative (HPA: adrenal gland and bronchus IHC). Compare a no-primary control and the morphology of an established positive structure (general IHC practice). |
| A uniform haze across many cells, or no stain in an established positive structure (HPA: High in CNS glia and peripheral nerve). | Diffuse haze weakens a cell-specific interpretation; absent staining in an HPA-positive structure raises a sensitivity or run-control concern (HPA: tissue IHC). Check background controls for the former and the validated staining workflow for the latter (general IHC practice). Neither observation, by itself, demonstrates a target-specific fixation effect; none is documented in the supplied sources. |
| Which tissue provides an interpretable positive comparison? | Cerebral cortex, caudate and hippocampus contain glial cells scored High; cerebellar Bergmann glia and soft-tissue peripheral nerve are also High (HPA: tissue IHC). Confirm the named cell type on the slide, since a tissue label alone does not identify which cells should stain (HPA: tissue IHC cell-level entries). |
| How should a negative comparison be chosen? | Adrenal glandular cells and bronchial respiratory epithelial cells are reported Not detected (HPA: tissue IHC). Use those named populations when assessing unexpected staining; do not infer that an entire adrenal gland or bronchus is uniformly negative from a cell-level entry (HPA: tissue IHC). |
| Does antibody validation settle an unusual pattern? | Three listed antibodies have Enhanced IHC status: HPA015768, CAB000073 and CAB078196 (HPA: antibody validation). Enhanced reflects reproduction by independent antibodies or orthogonal data, but HPA also reports medium staining–RNA consistency for S100B (HPA: IHC validation and reliability). Resolve an unusual compartment or cell type with controls and morphology rather than treating the rating as proof for that observation. |
| Can secreted S100B explain extracellular color? | UniProt lists S100B as secreted and says interaction with CLSTN3beta promotes secretion into medium (UniProt P04271). HPA warns that protein and RNA tissue locations may differ for a secreted variant (HPA: reliability description). Extracellular color is therefore a cautious observation, not sufficient evidence of cell-specific expression without the expected stained cells and clean controls. |
| What should an IF/ICC result look like? | HPA’s separate ICC-IF data place S100B mainly in vesicles, cytosol and primary cilium; cilium localization is marked uncertain, while nucleoplasm is an additional supported location (HPA: subcellular ICC-IF). These cell-imaging annotations can guide interpretation of an IF/ICC image, but they do not replace the tissue IHC pattern or define a paraffin-section protocol (HPA: subcellular ICC-IF; HPA: tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in cerebral cortex, caudate or hippocampal glia (HPA: High in glial cells). | A failed staining run or insufficient assay sensitivity is possible; the slide alone cannot identify a target-specific fixation effect (general IHC practice; HPA: tissue IHC). | Verify the positive-control section and catalog antibody’s IHC-P instructions, then review the run’s antigen retrieval, primary dilution and detection steps as general IHC checks. No S100B-specific retrieval or dilution value is supplied here. |
| No signal in the intended positive tissue, while another structure stains. | The stained structure may differ from the HPA-listed cell population; tissue-level presence does not make every cell positive (HPA: tissue IHC cell-level entries). | Locate the expected glial cells, Bergmann glia or peripheral nerve by morphology and score those cells specifically (HPA: tissue IHC). Use a known-positive control section to distinguish a cell-selection problem from a weak run (general IHC practice). |
| Broad, pale chromogenic color obscures cell boundaries. | Nonspecific background or detection background may be contributing; a diffuse haze does not match HPA’s cell-specific tissue descriptions (HPA: tissue IHC profile; general IHC practice). | Inspect a no-primary control and review blocking, washes, antibody dilution and chromogen development under the validated workflow (general IHC practice). Re-score only where individual cells and compartments remain distinguishable (HPA: tissue IHC profile). |
| Adrenal glandular or bronchial epithelial cells stain strongly (HPA: Not detected). | Cross-reactivity or endogenous detection activity is possible (general IHC practice). HPA’s negative calls apply to these named cell types, not every neighboring structure (HPA: tissue IHC). | Compare the no-primary control and an HPA-positive tissue; inspect morphology before assigning the signal to the named negative cells (general IHC practice; HPA: tissue IHC). If background persists, review the detection system’s endogenous-activity blocking step (general IHC practice). |
| Signal is mainly an isolated membrane rim or extracellular deposit. | S100B lacks a transmembrane segment and can be secreted, so location alone cannot establish cellular S100B expression (UniProt P04271). | Check for accompanying nuclear or cytoplasmic staining in expected cells and compare background controls (HPA: tissue IHC profile; general IHC practice). Interpret cerebellar Bergmann glia in their tissue context, where HPA reports cytoplasm/membrane staining (HPA: cerebellum IHC). |
| An IF/ICC image shows puncta or ciliary signal that differs from the IHC slide. | HPA’s ICC-IF compartment annotations come from cell imaging; primary-cilium localization is marked uncertain (HPA: subcellular ICC-IF). | Assess IF/ICC against its separate guide and controls, and score the paraffin IHC section against tissue cell types and compartments (HPA: subcellular ICC-IF; HPA: tissue IHC). Do not transfer an ICC-IF location into an IHC positive call solely because it appears in the cell image. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Breast | Myoepithelial cells | High | Protein (IHC) | HPA → |
| Caudate | Glial cells | High | Protein (IHC) | HPA → |
| Cerebellum | Bergmann glia - cytoplasm/membrane | High | Protein (IHC) | HPA → |
| Cerebral cortex | Glial cells | High | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Cervix | Glandular cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot S100B staining in paraffin sections by checking retrieval, cellular localisation and controls before comparing chromogenic signal across samples.
Two anti-S100B antibodies have tissue IHC images and list human, mouse and rat reactivity; M00979-1 also has IF images (catalog reactivity; IHC/IF image captions).
M00979-1 lists IHC and ICC/IF applications, with IHC images of rat cerebral cortex, mouse pancreas and hippocampus, and human testis cancer, plus IF images (catalog applications; IHC/IF image captions). M00979-4 lists IHC and IF applications, with IHC images of human liver and human, mouse and rat colon; no IF image is supplied (catalog applications; IHC/IF image captions).
Which to pick: For paraffin-section IHC, choose M00979-1 when its rat cerebral cortex example is relevant; the caption specifies paraffin embedding but does not report the fixative (M00979-1 IHC image caption). For IF/ICC, choose M00979-1 because both applications and IF images are listed, while M00979-4 lists IF but supplies no IF image (catalog applications; IF image captions). For cross-species tissue IHC, M00979-4 has colon images from human, mouse and rat; its captions do not report processing or fixation, and both products are rabbit monoclonals listed as reactive with all three species (M00979-4 IHC image captions; catalog host, clonality and reactivity).