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- Table of Contents
Plan paraffin-section IHC around the granular cytoplasmic pattern seen in tissue (HPA tissue IHC) and SDHA’s inner mitochondrial membrane location (UniProt). Use high-staining cardiomyocytes as a reference (HPA tissue IHC) while optimizing the catalog antibody’s IHC conditions (datasheet: PA1717).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Granular cytoplasm (HPA tissue IHC); inner mitochondrial membrane (UniProt) | |
| Staining pattern | Granular cytoplasm in cardiomyocytes and many other cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PA1717) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Ubiquitous staining limits negative-cell comparisons (HPA tissue IHC) | |
| Regulation | No specific regulator annotated (UniProt) | |
| Isoform / epitope | Three isoforms; epitope differences unspecified (UniProt) |
The catalog antibody protocol uses EDTA pH 8.0 retrieval (datasheet: PA1717). The published SDHA IHC protocols below cover gastrointestinal stromal tumors and renal tumors (PMC3545041; PMC7528421; PMC8353944).
| Sample | Paraffin-embedded human lung cancer tissue; fixative not specified (datasheet PA1717) |
| Fixation | Image fixative and duration unreported (datasheet PA1717); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PA1717); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PA1717) |
| Primary antibody | Rabbit anti-SDHA, 2-5 μg/ml (datasheet PA1717) |
| Primary incubation | Overnight at 4 °C (datasheet PA1717) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet PA1717) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | SDHA-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Ubiquitous cytoplasmic expression with a granular pattern. No signal in the no-primary control. |
SDHA is an inner mitochondrial membrane protein with no transmembrane segment (UniProt P31040 topology). In paraffin-section IHC, expect granular cytoplasmic staining across many cell types (HPA: ubiquitous cytoplasmic expression with a granular pattern). Cardiomyocytes, hepatocytes and kidney collecting ducts are among the cells scored High (HPA: tissue IHC). The tissue IHC profile has Enhanced reliability, with medium consistency between antibody staining and RNA expression (HPA: tissue IHC reliability).
| Granular cytoplasmic staining in cardiomyocytes, hepatocytes or kidney collecting ducts. | This fits SDHA's mitochondrial location (UniProt P31040 subcellular location) and the High staining recorded for these cells (HPA: tissue IHC). Compare granularity and distribution with a validated positive control on the same run (general IHC practice). |
| Dominant nuclear staining, or a smooth outline around cells instead of cytoplasmic granules. | This does not fit the expected IHC pattern (HPA: ubiquitous granular cytoplasmic expression). Review antibody specificity and detection background (general IHC practice). A plasma-membrane signal is reported only as an uncertain additional ICC-IF location (HPA: subcellular). |
| Strong staining confined to an unexpected cell population while adjacent expected cells show little signal. | Check the cell identity and local HPA reference before calling it cross-reactivity: SDHA staining is widespread, and HPA lists no negative tissue (HPA: tissue IHC). If the pattern remains discordant, assess nonspecific antibody binding or endogenous detection activity (general IHC practice). |
| Uniform haze, precipitate-like deposits or similar color across cells and empty regions. | These features do not establish mitochondrial SDHA staining (UniProt P31040 subcellular location; HPA: granular cytoplasmic pattern). Examine no-primary and detection-only controls for background, endogenous enzyme activity or chromogen deposits (general IHC practice). |
| No granular signal in heart cardiomyocytes or liver hepatocytes. | Both are High in the HPA tissue IHC record, so a blank result calls for a run and specimen review (HPA: High in cardiomyocytes and hepatocytes). Check control performance, antibody dilution and detection before interpreting SDHA as absent (general IHC practice). |
| Compartment and topology | SDHA is assigned to the mitochondrial inner membrane but has no transmembrane segment (UniProt P31040 topology). Judge IHC by granular cytoplasmic distribution, not a continuous cell-boundary outline (HPA: tissue IHC pattern). |
| Tissue choice and intensity | HPA scores cardiomyocytes and hepatocytes High, but adipocytes and bone-marrow hematopoietic cells Low (HPA: tissue IHC). Use a High-scoring cell population as the positive reference; Low is not a validated negative (HPA: tissue IHC). |
| Antibody evidence | The supplied antibodies have different IHC validation statuses: HPA041981 is Supported and CAB034929 is Enhanced (HPA: antibodies). These labels support pattern assessment but do not provide a dilution, retrieval condition or guarantee for another antibody (HPA: antibodies). |
| Isoforms and processing | UniProt lists three SDHA isoforms and a mature chain spanning residues 43–664 (UniProt P31040 isoforms and processing). The supplied evidence gives no antibody epitope, so it cannot establish which isoforms a particular stain detects. |
| IF/ICC: what location is expected? | Mainly mitochondrial staining is supported; an additional plasma-membrane location is uncertain (HPA: subcellular ICC-IF). This ICC-IF observation is context for interpretation, not an IHC-P protocol or proof that membrane staining is the dominant paraffin-section pattern (HPA: subcellular; HPA: tissue IHC). |
| Fixation sensitivity | Target-specific effects of fixation on SDHA staining are unreported in the supplied UniProt and HPA records. Record the preparation and compare controls when optimizing an IHC run (general IHC practice); do not infer SDHA fixation sensitivity from its topology or HPA intensity. |
| Situation | Likely cause | Next action |
|---|---|---|
| A known High-scoring control is blank. | A failed staining run or unsuitable assay conditions are possible; HPA reports High staining in cardiomyocytes and hepatocytes (HPA: tissue IHC). | Confirm that the positive-control section contains the expected cells, then review antibody dilution, retrieval and detection against the validated IHC-P procedure (general IHC practice). No SDHA-specific retrieval setting is supplied here. |
| The slide shows widespread brown haze without distinct granules. | Nonspecific binding or detection background may obscure the granular pattern recorded by HPA (HPA: tissue IHC; general IHC practice). | Inspect no-primary controls and review blocking, washes, antibody concentration and chromogen development (general IHC practice). Score SDHA only where a cell-associated granular pattern remains interpretable (HPA: tissue IHC). |
| Blood-rich or other unexpected areas stain strongly with chromogenic detection. | Endogenous detection activity can contribute color independent of the primary antibody (general IHC practice). The HPA record provides no negative tissue against which to assume those areas must be blank (HPA: tissue IHC). | Compare a no-primary or detection-only section and apply the detection system's appropriate endogenous-activity control (general IHC practice). Reassess whether staining follows the HPA granular cytoplasmic pattern (HPA: tissue IHC). |
| Nuclei are the dominant stained structure. | Dominant nuclear localization conflicts with the mitochondrial assignment and HPA granular cytoplasmic profile (UniProt P31040 subcellular location; HPA: tissue IHC). | Check counterstain and detection-only controls, then compare with a High-scoring tissue control and the antibody's validation record (general IHC practice; HPA: tissue IHC and antibodies). |
| An unexpected cell type appears positive while nearby cells are faint. | Cell composition and intensity vary: HPA reports ubiquitous expression alongside High and Low cell-specific scores (HPA: tissue IHC). Cross-reactivity is possible but cannot be diagnosed from that contrast alone. | Identify the stained cells, compare their compartment and granularity with the HPA profile, and use controls to investigate nonspecific color (HPA: tissue IHC; general IHC practice). |
| A smooth cell-boundary signal is interpreted as SDHA. | The supported IHC profile is granular cytoplasmic, while plasma-membrane localization is uncertain in ICC-IF data (HPA: tissue IHC; HPA: subcellular ICC-IF). | Review a High-scoring IHC control and antibody validation, and avoid scoring boundary-only color as a clear positive without corroborating granular cytoplasmic staining (HPA: tissue IHC and antibodies). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: SDHA is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot SDHA staining in paraffin sections by checking retrieval, mitochondrial pattern and controls before comparing signal across cells (UniProt P31040; HPA tissue IHC).
IHC images cover human lung and breast cancer sections, mouse heart, and human, mouse, and rat kidney (catalog IHC captions); IF images cover HeLa and U2OS cells (catalog IF captions).
PA1717 has a paraffin-section IHC image of human lung cancer (PA1717 IHC caption), and PB9433 has one of human breast cancer (PB9433 IHC caption). M01753-2 has IHC images of human, mouse, and rat kidney (M01753-2 IHC captions); A01753 has an IF image of HeLa cells (A01753 IF caption).
Which to pick: Choose PA1717 or PB9433 for paraffin-section IHC with heat retrieval in EDTA at pH 8.0 (PA1717 and PB9433 IHC captions); the captions do not report the fixative. For IF/ICC, choose A01753 for its HeLa cell IF image (A01753 IF caption), or PB9433 when one antibody is needed for both IHC and IF/ICC (PB9433 applications and image captions). For IHC across human, mouse, and rat samples, M01753-2 is a rabbit monoclonal with kidney images from all three species (M01753-2 catalog and IHC captions).